Wall clock time and date at job start Tue Mar 31 2020 12:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46877 * 2 1 4 4 O 1.21288 * 119.99874 * 0.28136 * 3 2 1 5 5 N 1.34774 * 120.00153 * 180.02562 * 3 2 1 6 6 C 1.46524 * 124.97319 * 0.02869 * 5 3 2 7 7 C 1.53732 * 105.21040 * 179.97438 * 6 5 3 8 8 C 1.51239 * 104.59108 * 0.02562 * 7 6 5 9 9 C 1.38255 * 130.88094 * 180.02562 * 8 7 6 10 10 C 1.38096 * 120.24023 * 180.02562 * 9 8 7 11 11 C 1.38940 * 119.75800 * 359.97438 * 10 9 8 12 12 N 1.39940 * 119.96216 * 180.02562 * 11 10 9 13 13 C 1.34772 * 120.00309 * 33.32467 * 12 11 10 14 14 O 1.21589 * 120.00055 * 5.31791 * 13 12 11 15 15 N 1.34776 * 120.00120 * 185.31462 * 13 12 11 16 16 C 1.46497 * 119.99928 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47055 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99604 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99934 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99941 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99755 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47301 * 60.00596 * 21 19 17 23 23 H 1.48507 * 109.47027 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47392 * 300.00187 * 21 19 17 25 25 C 1.38461 * 120.07047 * 0.02562 * 11 10 9 26 26 C 1.38615 * 108.53621 * 359.77000 * 8 7 6 27 27 H 1.08999 * 109.47384 * 59.99566 * 1 2 3 28 28 H 1.09005 * 109.46911 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47262 * 299.99377 * 1 2 3 30 30 H 1.09002 * 109.46787 * 240.00490 * 2 1 3 31 31 H 1.08994 * 109.47377 * 119.99968 * 2 1 3 32 32 H 1.09005 * 110.30009 * 298.89451 * 6 5 3 33 33 H 1.09003 * 110.29772 * 60.93024 * 6 5 3 34 34 H 1.09005 * 110.41348 * 118.77870 * 7 6 5 35 35 H 1.09000 * 110.41561 * 241.22083 * 7 6 5 36 36 H 1.07994 * 119.88469 * 359.96935 * 9 8 7 37 37 H 1.08000 * 120.12467 * 179.97438 * 10 9 8 38 38 H 0.97002 * 119.99868 * 213.32904 * 12 11 10 39 39 H 0.97000 * 119.99814 * 359.97438 * 15 13 12 40 40 H 1.08996 * 109.47291 * 300.00066 * 16 15 13 41 41 H 1.08995 * 109.47579 * 60.00187 * 16 15 13 42 42 H 0.96996 * 119.99621 * 179.97438 * 20 19 17 43 43 H 1.07997 * 119.88244 * 180.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0052 5 7 3.3573 1.6672 -0.0005 6 6 4.4025 0.6403 -0.0017 7 6 5.7299 1.4158 -0.0026 8 6 5.3205 2.8718 -0.0011 9 6 6.0819 4.0258 -0.0016 10 6 5.4691 5.2633 0.0006 11 6 4.0821 5.3460 0.0027 12 7 3.4566 6.5979 0.0044 13 6 4.0268 7.6370 -0.6371 14 8 5.0332 7.4656 -1.2975 15 7 3.4815 8.8662 -0.5465 16 6 4.1010 9.9956 -1.2443 17 6 3.3030 11.2469 -0.9821 18 1 2.4227 11.2050 -0.3579 19 6 3.6974 12.4452 -1.5384 20 7 4.7697 12.4962 -2.2982 21 14 2.7078 13.9960 -1.2140 22 1 2.6806 14.2697 0.2452 23 1 3.3359 15.1409 -1.9212 24 1 1.3201 13.8103 -1.7088 25 6 3.3182 4.1912 0.0032 26 6 3.9361 2.9403 -0.0049 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 4.3265 0.0223 0.8930 33 1 4.3237 0.0216 -0.8956 34 1 6.3070 1.1827 0.8923 35 1 6.3055 1.1833 -0.8985 36 1 7.1598 3.9593 -0.0027 37 1 6.0656 6.1636 0.0007 38 1 2.6126 6.7177 0.4673 39 1 2.6784 9.0028 -0.0200 40 1 5.1197 10.1321 -0.8815 41 1 4.1206 9.7945 -2.3153 42 1 5.0469 13.3392 -2.6898 43 1 2.2404 4.2590 0.0044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934181199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:48 Heat of formation + Delta-G solvation = -60.085703 kcal Electronic energy + Delta-G solvation = -25506.752311 eV Core-core repulsion = 21743.686736 eV Total energy + Delta-G solvation = -3763.065575 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.27188 -41.34475 -39.73355 -37.84236 -36.17379 -35.39653 -34.35989 -33.78477 -32.87325 -30.91672 -29.88438 -28.54525 -26.11846 -25.02724 -23.93761 -23.67830 -22.74142 -21.71589 -20.47520 -19.82383 -18.68886 -18.30569 -17.81934 -17.44049 -17.10319 -16.85664 -16.43173 -16.16851 -15.92688 -15.78905 -15.31443 -15.01333 -14.58203 -14.33935 -14.32548 -14.18622 -14.05964 -13.72445 -13.38495 -13.22024 -12.95320 -12.81398 -12.76673 -12.70068 -12.59350 -12.26133 -12.24216 -12.06987 -11.75643 -11.52890 -11.31938 -10.95934 -10.81768 -10.67763 -9.96215 -9.34797 -8.64851 -8.30403 -6.47114 0.19612 0.29680 1.41502 1.46665 1.51141 1.55306 1.58143 1.86079 2.06059 2.37576 2.81096 3.04432 3.27171 3.37121 3.62496 3.78878 4.05009 4.12125 4.17990 4.24141 4.32125 4.34246 4.43638 4.61274 4.61888 4.74237 4.93180 4.96455 5.02032 5.02711 5.11535 5.19883 5.22641 5.25607 5.32869 5.35596 5.41101 5.44322 5.54153 5.62164 5.79986 6.04250 6.11826 6.34166 6.62753 6.95467 7.09067 7.22558 7.52510 8.81653 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.002430 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.940508 B =11522.051622 C =12616.915178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C 0.505 3.495 4 O -0.568 6.568 5 N -0.557 5.557 6 C 0.095 3.905 7 C -0.077 4.077 8 C -0.153 4.153 9 C -0.057 4.057 10 C -0.162 4.162 11 C 0.180 3.820 12 N -0.677 5.677 13 C 0.694 3.306 14 O -0.621 6.621 15 N -0.716 5.716 16 C 0.286 3.714 17 C -0.558 4.558 18 H 0.083 0.917 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.987 3.013 22 H -0.262 1.262 23 H -0.284 1.284 24 H -0.264 1.264 25 C -0.177 4.177 26 C 0.144 3.856 27 H 0.041 0.959 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.154 0.846 37 H 0.114 0.886 38 H 0.418 0.582 39 H 0.406 0.594 40 H -0.008 1.008 41 H -0.012 1.012 42 H 0.270 0.730 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 -32.009 8.591 33.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.166 4.166 3 C 0.298 3.702 4 O -0.446 6.446 5 N -0.280 5.280 6 C -0.025 4.025 7 C -0.114 4.114 8 C -0.157 4.157 9 C -0.076 4.076 10 C -0.183 4.183 11 C 0.084 3.916 12 N -0.326 5.326 13 C 0.394 3.606 14 O -0.501 6.501 15 N -0.369 5.369 16 C 0.163 3.837 17 C -0.596 4.596 18 H 0.101 0.899 19 C -0.195 4.195 20 N -0.567 5.567 21 Si 0.809 3.191 22 H -0.186 1.186 23 H -0.209 1.209 24 H -0.188 1.188 25 C -0.201 4.201 26 C 0.048 3.952 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.064 0.936 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.172 0.828 37 H 0.132 0.868 38 H 0.256 0.744 39 H 0.242 0.758 40 H 0.010 0.990 41 H 0.006 0.994 42 H 0.079 0.921 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.147 -31.570 7.890 32.612 hybrid contribution -1.066 1.798 0.158 2.096 sum -3.213 -29.772 8.047 31.007 Atomic orbital electron populations 1.21583 0.93473 1.03027 1.01748 1.21729 0.97982 0.89546 1.07303 1.21885 0.79885 0.94075 0.74391 1.90684 1.55576 1.48565 1.49812 1.46261 1.07052 1.05395 1.69279 1.22613 0.84036 0.89924 1.05926 1.21224 0.97340 0.86905 1.05956 1.20377 0.91396 0.97278 1.06641 1.20465 1.00873 0.89210 0.97089 1.21109 0.93062 0.99084 1.05071 1.17313 0.91953 0.83465 0.98852 1.42491 1.26769 1.07201 1.56097 1.16186 0.83215 0.81192 0.80012 1.90858 1.28040 1.84366 1.46871 1.45367 1.31478 1.06149 1.53906 1.18488 0.92571 0.82443 0.90223 1.21553 1.12638 0.92751 1.32671 0.89914 1.26055 0.96204 1.03158 0.94057 1.70130 1.25638 1.28126 1.32805 0.85184 0.78368 0.76630 0.78881 1.18646 1.20890 1.18823 1.20382 1.00104 0.89594 1.10009 1.18215 0.92721 0.85740 0.98485 0.93927 0.88925 0.93607 0.85752 0.85401 0.86590 0.87095 0.86714 0.87309 0.82811 0.86802 0.74408 0.75837 0.99003 0.99368 0.92137 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.20 71.98 0.66 -0.99 16 2 C -0.13 -1.12 5.56 29.85 0.17 -0.95 16 3 C 0.50 10.27 7.79 87.66 0.68 10.95 16 4 O -0.57 -17.30 14.14 -3.05 -0.04 -17.34 16 5 N -0.56 -10.38 3.13 -629.56 -1.97 -12.35 16 6 C 0.09 0.68 6.66 86.62 0.58 1.26 16 7 C -0.08 -0.73 6.94 30.27 0.21 -0.52 16 8 C -0.15 -3.29 6.23 -19.60 -0.12 -3.41 16 9 C -0.06 -1.46 10.03 22.24 0.22 -1.24 16 10 C -0.16 -5.57 8.66 22.40 0.19 -5.38 16 11 C 0.18 6.32 6.27 38.07 0.24 6.56 16 12 N -0.68 -24.25 5.34 -317.44 -1.70 -25.95 16 13 C 0.69 31.29 8.30 179.06 1.49 32.78 16 14 O -0.62 -33.08 14.02 -4.00 -0.06 -33.13 16 15 N -0.72 -32.56 5.55 -482.30 -2.68 -35.24 16 16 C 0.29 16.22 5.43 85.64 0.46 16.68 16 17 C -0.56 -31.12 9.28 25.60 0.24 -30.88 16 18 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 19 C 0.01 0.29 5.46 84.65 0.46 0.75 16 20 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 21 Si 0.99 43.10 29.54 68.60 2.03 45.13 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 25 C -0.18 -5.70 9.36 22.63 0.21 -5.49 16 26 C 0.14 3.77 6.62 38.26 0.25 4.02 16 27 H 0.04 0.67 8.10 -2.39 -0.02 0.66 16 28 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.04 0.69 8.10 -2.38 -0.02 0.68 16 30 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.12 0.12 8.14 -2.38 -0.02 0.10 16 33 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 37 H 0.11 4.56 6.42 -2.91 -0.02 4.55 16 38 H 0.42 12.08 8.83 -92.71 -0.82 11.27 16 39 H 0.41 15.40 8.34 -92.71 -0.77 14.63 16 40 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.13 4.33 6.27 -2.91 -0.02 4.31 16 Total: -1.00 -85.01 361.42 1.28 -83.73 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.54 Total: 27.44 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: 5.95 Total: 24.14 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -6.06 Total: -129.96 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -0.10 Total: -50.47 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -85.01 1.28 -83.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934181199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.643 kcal (2) G-P(sol) polarization free energy of solvation -85.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds