Wall clock time and date at job start Tue Mar 31 2020 12:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.69754 * 2 1 4 4 C 1.53188 * 109.58463 * 239.64786 * 2 1 3 5 5 C 1.53044 * 109.31259 * 294.84712 * 4 2 1 6 6 H 1.08991 * 109.45963 * 58.64471 * 5 4 2 7 7 N 1.46496 * 109.46034 * 178.62078 * 5 4 2 8 8 C 1.34780 * 119.99964 * 204.99706 * 7 5 4 9 9 O 1.21721 * 119.99952 * 0.02562 * 8 7 5 10 10 C 1.46494 * 119.99889 * 179.97438 * 8 7 5 11 11 C 1.37781 * 125.85682 * 180.02562 * 10 8 7 12 12 C 1.39932 * 107.68929 * 180.02562 * 11 10 8 13 13 O 1.35124 * 145.14304 * 179.97438 * 12 11 10 14 14 C 1.34382 * 109.62221 * 179.97438 * 13 12 11 15 15 C 1.34456 * 109.44917 * 0.02562 * 14 13 12 16 16 C 1.39136 * 107.40427 * 359.97411 * 12 11 10 17 17 N 1.37110 * 108.10806 * 0.02562 * 16 12 11 18 18 H 0.97005 * 125.74554 * 180.02562 * 17 16 12 19 19 C 1.53045 * 109.53519 * 298.63416 * 5 4 2 20 20 C 1.53195 * 109.30924 * 61.36956 * 19 5 4 21 21 N 1.46918 * 109.58491 * 120.35815 * 2 1 3 22 22 C 1.36943 * 120.62687 * 246.20120 * 21 2 1 23 23 H 1.07991 * 120.00002 * 331.82522 * 22 21 2 24 24 C 1.38813 * 119.99903 * 151.82613 * 22 21 2 25 25 N 1.31625 * 120.00119 * 343.06459 * 24 22 21 26 26 Si 1.86803 * 120.00254 * 163.06943 * 24 22 21 27 27 H 1.48499 * 109.46895 * 89.99704 * 26 24 22 28 28 H 1.48500 * 109.47097 * 210.00169 * 26 24 22 29 29 H 1.48499 * 109.46457 * 329.99808 * 26 24 22 30 30 H 1.08997 * 109.47156 * 180.34972 * 1 2 3 31 31 H 1.08995 * 109.47518 * 300.35576 * 1 2 3 32 32 H 1.09007 * 109.47318 * 60.35602 * 1 2 3 33 33 H 1.09000 * 109.49469 * 174.89748 * 4 2 1 34 34 H 1.08995 * 109.50353 * 54.79932 * 4 2 1 35 35 H 0.97001 * 120.00457 * 24.99719 * 7 5 4 36 36 H 1.07998 * 126.15483 * 0.02562 * 11 10 8 37 37 H 1.08004 * 125.27198 * 179.73580 * 14 13 12 38 38 H 1.08010 * 126.41606 * 179.97438 * 15 14 13 39 39 H 1.09004 * 109.49533 * 181.31699 * 19 5 4 40 40 H 1.09000 * 109.50381 * 301.41737 * 19 5 4 41 41 H 1.09005 * 109.58456 * 185.57572 * 20 19 5 42 42 H 1.08999 * 109.70651 * 65.22173 * 20 19 5 43 43 H 0.96991 * 120.00320 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 1.6414 -2.2040 -1.1702 6 1 0.5566 -2.2814 -1.0992 7 7 2.1023 -2.8977 -2.3754 8 6 1.4751 -4.0160 -2.7908 9 8 0.5253 -4.4493 -2.1649 10 6 1.9357 -4.7093 -3.9963 11 6 1.3863 -5.8557 -4.5277 12 6 2.1185 -6.1866 -5.6733 13 8 2.2469 -7.0652 -6.6918 14 6 3.2756 -6.7003 -7.4756 15 6 3.8369 -5.5812 -6.9855 16 6 3.1131 -5.2253 -5.8236 17 7 2.9955 -4.3260 -4.7953 18 1 3.5609 -3.5507 -4.6531 19 6 2.2801 -2.8464 0.0634 20 6 1.7691 -2.1410 1.3237 21 7 2.0225 -0.6996 1.1944 22 6 2.7044 -0.0208 2.1689 23 1 3.2758 0.8596 1.9147 24 6 2.6611 -0.4646 3.4835 25 7 1.7268 -1.3110 3.8620 26 14 3.9287 0.1396 4.7155 27 1 3.4286 1.3718 5.3763 28 1 4.1638 -0.9104 5.7390 29 1 5.2012 0.4374 4.0105 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3634 0.5193 0.8867 32 1 -0.3634 0.5083 -0.8932 33 1 3.1297 -0.6503 -1.2913 34 1 1.6075 -0.2784 -2.1368 35 1 2.8590 -2.5522 -2.8745 36 1 0.5425 -6.4008 -4.1313 37 1 3.6039 -7.2273 -8.3594 38 1 4.6824 -5.0529 -7.4011 39 1 2.0123 -3.9022 0.1035 40 1 3.3640 -2.7474 0.0052 41 1 2.2944 -2.5275 2.1971 42 1 0.6989 -2.3155 1.4342 43 1 1.6967 -1.6213 4.7805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947364945.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:02 Heat of formation + Delta-G solvation = 24.618094 kcal Electronic energy + Delta-G solvation = -26285.796512 eV Core-core repulsion = 22526.403970 eV Total energy + Delta-G solvation = -3759.392543 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.90969 -41.41289 -40.08742 -39.05541 -36.13471 -34.36592 -33.32736 -32.57005 -31.79875 -31.31849 -29.39814 -28.40452 -26.26994 -24.93712 -23.68221 -22.93004 -22.65764 -21.72174 -21.29365 -20.12281 -19.41298 -18.66729 -18.02723 -17.51062 -17.26439 -16.65164 -16.49694 -16.13008 -15.82293 -15.51683 -15.32087 -14.96943 -14.64927 -14.53931 -14.48652 -14.13692 -14.11473 -13.87881 -13.65170 -13.15510 -12.93757 -12.77543 -12.62655 -12.58230 -12.29841 -12.07377 -12.02326 -11.80469 -11.51842 -11.38367 -11.07136 -11.00455 -10.55827 -10.14282 -9.65640 -8.89094 -8.67663 -7.85330 -5.30449 -0.06750 1.20527 1.47021 1.48958 1.49436 1.57968 1.69689 1.75492 2.20489 2.28032 2.52227 3.30699 3.59553 3.63664 3.70422 3.86003 3.96881 4.06518 4.27121 4.31441 4.44025 4.48590 4.51775 4.69144 4.71329 4.73120 4.77007 4.84856 4.87570 5.03175 5.06860 5.10938 5.17034 5.32705 5.39842 5.44284 5.45623 5.54584 5.56910 5.69137 5.76895 6.14566 6.31105 6.41707 6.48257 7.04971 7.16526 7.88532 8.40549 9.21325 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027067 B = 0.002609 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.227910 B =10729.062056 C =10885.712254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.160 3.840 3 H 0.071 0.929 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.069 0.931 7 N -0.704 5.704 8 C 0.589 3.411 9 O -0.565 6.565 10 C -0.002 4.002 11 C -0.095 4.095 12 C -0.077 4.077 13 O -0.187 6.187 14 C 0.027 3.973 15 C -0.213 4.213 16 C 0.015 3.985 17 N -0.516 5.516 18 H 0.435 0.565 19 C -0.133 4.133 20 C 0.184 3.816 21 N -0.599 5.599 22 C -0.257 4.257 23 H 0.072 0.928 24 C -0.053 4.053 25 N -0.936 5.936 26 Si 0.964 3.036 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.267 1.267 30 H 0.035 0.965 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.410 0.590 36 H 0.154 0.846 37 H 0.259 0.741 38 H 0.185 0.815 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.052 0.948 42 H -0.008 1.008 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.545 -5.695 -25.626 27.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.090 0.910 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.087 0.913 7 N -0.354 5.354 8 C 0.376 3.624 9 O -0.443 6.443 10 C -0.115 4.115 11 C -0.123 4.123 12 C -0.128 4.128 13 O -0.086 6.086 14 C -0.040 4.040 15 C -0.234 4.234 16 C -0.099 4.099 17 N -0.122 5.122 18 H 0.276 0.724 19 C -0.174 4.174 20 C 0.058 3.942 21 N -0.321 5.321 22 C -0.387 4.387 23 H 0.090 0.910 24 C -0.248 4.248 25 N -0.582 5.582 26 Si 0.793 3.207 27 H -0.213 1.213 28 H -0.224 1.224 29 H -0.192 1.192 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.246 0.754 36 H 0.172 0.828 37 H 0.275 0.725 38 H 0.202 0.798 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.010 0.990 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.747 -6.125 -24.978 26.352 hybrid contribution 0.788 0.575 1.328 1.648 sum 6.535 -5.550 -23.650 25.156 Atomic orbital electron populations 1.22203 0.98219 1.00368 1.00606 1.20709 0.92178 0.95551 0.86227 0.91034 1.22150 1.02046 0.92491 0.99050 1.20822 0.98709 0.92126 0.82600 0.91274 1.45866 1.34792 1.26280 1.28463 1.17056 0.82342 0.80427 0.82570 1.90878 1.29482 1.66759 1.57204 1.19918 0.95277 0.99630 0.96628 1.20023 1.02124 0.96774 0.93382 1.19384 1.03294 0.94375 0.95782 1.84033 1.46726 1.45691 1.32116 1.25122 0.86097 0.96098 0.96633 1.21013 1.05780 1.01172 0.95455 1.19530 1.01357 0.93795 0.95255 1.41021 1.26855 1.24175 1.20134 0.72376 1.22344 1.00384 0.98401 0.96228 1.20413 0.95578 0.83685 0.94555 1.44374 1.64129 1.03555 1.20081 1.19518 1.21539 1.10393 0.87251 0.90992 1.25815 0.99478 1.00755 0.98761 1.70199 1.33669 1.37595 1.16785 0.85324 0.79706 0.76933 0.78757 1.21293 1.22449 1.19215 0.94628 0.95296 0.90657 0.90567 0.88848 0.75367 0.82823 0.72507 0.79779 0.93667 0.91993 0.92911 0.98974 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.72 9.02 71.98 0.65 -5.07 16 2 C 0.16 6.05 3.29 44.98 0.15 6.20 16 3 H 0.07 2.63 7.93 -2.38 -0.02 2.61 16 4 C -0.12 -3.38 5.02 30.67 0.15 -3.23 16 5 C 0.16 5.19 2.21 45.02 0.10 5.29 16 6 H 0.07 2.59 5.94 -2.39 -0.01 2.57 16 7 N -0.70 -17.57 5.07 -446.54 -2.27 -19.83 16 8 C 0.59 17.33 7.74 86.39 0.67 18.00 16 9 O -0.56 -21.80 16.53 -4.42 -0.07 -21.87 16 10 C 0.00 -0.05 7.03 40.19 0.28 0.24 16 11 C -0.09 -2.49 10.58 22.57 0.24 -2.25 16 12 C -0.08 -1.84 8.20 22.90 0.19 -1.65 16 13 O -0.19 -3.76 10.68 -11.53 -0.12 -3.89 16 14 C 0.03 0.29 12.02 66.95 0.80 1.10 16 15 C -0.21 -2.57 10.89 22.19 0.24 -2.32 16 16 C 0.02 0.29 8.11 39.32 0.32 0.61 16 17 N -0.52 -9.14 6.08 -176.19 -1.07 -10.21 16 18 H 0.44 4.62 8.16 -92.70 -0.76 3.86 16 19 C -0.13 -5.22 5.65 30.67 0.17 -5.04 16 20 C 0.18 9.07 4.88 86.36 0.42 9.49 16 21 N -0.60 -28.86 2.70 -675.24 -1.82 -30.68 16 22 C -0.26 -13.68 9.58 84.03 0.81 -12.87 16 23 H 0.07 3.67 7.88 -2.92 -0.02 3.65 16 24 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 25 N -0.94 -56.02 11.20 21.65 0.24 -55.78 16 26 Si 0.96 44.60 29.59 68.60 2.03 46.63 16 27 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 28 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 29 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 30 H 0.03 1.40 5.72 -2.39 -0.01 1.39 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.41 6.91 7.69 -92.71 -0.71 6.20 16 36 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 37 H 0.26 -0.11 8.06 -2.91 -0.02 -0.13 16 38 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 40 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.05 2.96 6.06 -2.38 -0.01 2.95 16 42 H -0.01 -0.42 7.49 -2.39 -0.02 -0.44 16 43 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -75.61 350.51 2.12 -73.49 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -0.41 Total: 16.18 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 5.61 Total: 5.96 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -4.92 Total: -116.50 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.20 Total: -25.76 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -75.61 2.12 -73.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947364945.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.109 kcal (2) G-P(sol) polarization free energy of solvation -75.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds