Wall clock time and date at job start Tue Mar 31 2020 12:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.09005 * 109.45529 * 301.22915 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21721 * 120.00138 * 0.02562 * 8 7 5 10 10 C 1.46490 * 119.99564 * 179.97438 * 8 7 5 11 11 C 1.37781 * 125.85487 * 179.69264 * 10 8 7 12 12 C 1.39939 * 107.68330 * 179.90240 * 11 10 8 13 13 O 1.35119 * 145.13729 * 179.97438 * 12 11 10 14 14 C 1.34373 * 109.62413 * 180.37461 * 13 12 11 15 15 C 1.34461 * 109.45065 * 0.02562 * 14 13 12 16 16 C 1.39133 * 107.40484 * 0.36336 * 12 11 10 17 17 N 1.37106 * 108.11147 * 359.77499 * 16 12 11 18 18 H 0.97005 * 125.74450 * 180.02562 * 17 16 12 19 19 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 20 20 C 1.53188 * 109.30760 * 298.63191 * 19 5 4 21 21 N 1.46920 * 108.77580 * 54.63833 * 20 19 5 22 22 C 1.36939 * 120.63582 * 126.36663 * 21 20 19 23 23 H 1.07995 * 120.00292 * 209.22921 * 22 21 20 24 24 C 1.38821 * 119.99775 * 29.22866 * 22 21 20 25 25 N 1.31613 * 119.99866 * 24.23336 * 24 22 21 26 26 Si 1.86800 * 119.99862 * 204.23488 * 24 22 21 27 27 H 1.48493 * 109.46799 * 179.97438 * 26 24 22 28 28 H 1.48503 * 109.46833 * 299.99850 * 26 24 22 29 29 H 1.48503 * 109.47246 * 59.99528 * 26 24 22 30 30 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 31 31 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 32 32 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 33 33 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 34 34 H 1.09003 * 109.36332 * 185.33608 * 4 2 1 35 35 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 36 36 H 1.07998 * 126.15946 * 0.02562 * 11 10 8 37 37 H 1.08006 * 125.27963 * 180.02562 * 14 13 12 38 38 H 1.08001 * 126.41730 * 180.02562 * 15 14 13 39 39 H 1.09004 * 109.49599 * 178.68183 * 19 5 4 40 40 H 1.08999 * 109.49891 * 58.58386 * 19 5 4 41 41 H 1.08993 * 109.59025 * 294.84561 * 20 19 5 42 42 H 1.09004 * 109.70226 * 174.48951 * 20 19 5 43 43 H 0.97003 * 120.00561 * 5.76988 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2809 1.0994 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5285 -4.4456 2.1708 10 6 1.9365 -4.6979 4.0050 11 6 1.3854 -5.8412 4.5414 12 6 2.1196 -6.1703 5.6863 13 8 2.2476 -7.0455 6.7077 14 6 3.2749 -6.6771 7.4917 15 6 3.8349 -5.5582 6.9995 16 6 3.1122 -5.2068 5.8354 17 7 2.9944 -4.3105 4.8046 18 1 3.5591 -3.5349 4.6608 19 6 2.2843 -2.8431 -0.0582 20 6 1.7740 -2.1421 -1.3211 21 7 2.0226 -0.6996 -1.1945 22 6 2.7052 -0.0210 -2.1685 23 1 3.2873 0.8517 -1.9118 24 6 2.6490 -0.4549 -3.4860 25 7 1.6257 -1.1718 -3.8996 26 14 4.0259 -0.0214 -4.6716 27 1 3.7298 -0.6000 -6.0067 28 1 4.1351 1.4552 -4.7846 29 1 5.3075 -0.5753 -4.1657 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5084 -0.8931 33 1 1.5987 -0.2724 2.1349 34 1 3.1241 -0.6413 1.2936 35 1 2.8564 -2.5412 2.8798 36 1 0.5403 -6.3863 4.1478 37 1 3.6003 -7.1989 8.3796 38 1 4.6790 -5.0275 7.4147 39 1 2.0200 -3.8999 -0.0966 40 1 3.3678 -2.7405 0.0022 41 1 0.7043 -2.3203 -1.4310 42 1 2.3004 -2.5283 -2.1940 43 1 0.8715 -1.3264 -3.3094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947364947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:11 Heat of formation + Delta-G solvation = 43.804250 kcal Electronic energy + Delta-G solvation = -26333.201946 eV Core-core repulsion = 22574.641378 eV Total energy + Delta-G solvation = -3758.560569 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.17933 -40.38744 -39.04530 -37.78159 -34.80272 -32.82628 -32.62230 -31.21093 -30.74716 -29.61350 -28.34289 -27.00369 -24.61737 -23.63609 -21.98947 -21.93355 -21.62527 -20.94177 -20.22050 -18.91146 -18.31740 -17.55004 -17.06879 -16.51440 -16.26999 -15.61367 -15.05096 -14.83237 -14.27390 -14.11033 -13.96398 -13.74423 -13.61788 -13.50132 -13.39480 -13.09963 -12.93310 -12.71593 -12.18073 -12.01347 -11.75184 -11.27482 -10.91797 -10.81588 -10.61564 -10.47485 -10.35842 -10.26780 -10.11432 -10.01026 -9.76524 -9.28717 -8.93951 -8.87524 -8.38517 -8.12283 -6.91641 -6.07887 -3.26557 0.76350 1.99970 2.22384 2.40278 2.62711 3.17507 3.24119 3.48016 3.51187 3.69483 4.27900 4.49042 4.56220 4.72177 4.99353 5.08604 5.16647 5.21259 5.26147 5.36704 5.41641 5.53216 5.63249 5.82979 5.83754 5.88275 6.04163 6.07403 6.13311 6.19125 6.26211 6.32140 6.40641 6.45854 6.58233 6.67680 6.79392 6.87148 6.93051 7.01117 7.05966 7.20426 7.45446 7.99704 8.09967 8.56736 9.10097 9.82559 10.27448 11.20695 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.002630 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.008964 B =10645.534813 C =10835.993171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.172 3.828 3 H 0.067 0.933 4 C -0.133 4.133 5 C 0.151 3.849 6 H 0.090 0.910 7 N -0.721 5.721 8 C 0.585 3.415 9 O -0.518 6.518 10 C 0.012 3.988 11 C -0.082 4.082 12 C -0.039 4.039 13 O -0.168 6.168 14 C 0.010 3.990 15 C -0.203 4.203 16 C 0.008 3.992 17 N -0.532 5.532 18 H 0.420 0.580 19 C -0.143 4.143 20 C 0.154 3.846 21 N -0.591 5.591 22 C -0.351 4.351 23 H 0.055 0.945 24 C -0.022 4.022 25 N -0.914 5.914 26 Si 1.064 2.936 27 H -0.285 1.285 28 H -0.293 1.293 29 H -0.294 1.294 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.390 0.610 36 H 0.161 0.839 37 H 0.212 0.788 38 H 0.153 0.847 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.021 0.979 42 H 0.081 0.919 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.353 -6.579 22.527 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.064 3.936 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.048 3.952 6 H 0.108 0.892 7 N -0.370 5.370 8 C 0.371 3.629 9 O -0.394 6.394 10 C -0.100 4.100 11 C -0.109 4.109 12 C -0.091 4.091 13 O -0.066 6.066 14 C -0.058 4.058 15 C -0.224 4.224 16 C -0.105 4.105 17 N -0.136 5.136 18 H 0.258 0.742 19 C -0.183 4.183 20 C 0.027 3.973 21 N -0.314 5.314 22 C -0.480 4.480 23 H 0.073 0.927 24 C -0.225 4.225 25 N -0.553 5.553 26 Si 0.894 3.106 27 H -0.211 1.211 28 H -0.220 1.220 29 H -0.221 1.221 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.223 0.777 36 H 0.179 0.821 37 H 0.228 0.772 38 H 0.171 0.829 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.039 0.961 42 H 0.099 0.901 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.104 -7.212 20.430 22.051 hybrid contribution 0.380 0.943 1.991 2.235 sum 4.485 -6.269 22.421 23.709 Atomic orbital electron populations 1.22342 0.98718 1.01075 1.00364 1.20347 0.91684 0.95272 0.86293 0.91441 1.22238 1.01297 0.93934 0.99817 1.21158 1.00055 0.91375 0.82623 0.89207 1.46209 1.34605 1.26930 1.29272 1.16848 0.83034 0.80573 0.82458 1.90897 1.27483 1.65357 1.55637 1.20445 0.93712 0.99334 0.96519 1.19926 1.01883 0.96506 0.92626 1.19292 1.02068 0.92865 0.94897 1.84027 1.45269 1.45518 1.31767 1.24049 0.88410 0.96553 0.96786 1.20559 1.04856 1.00633 0.96357 1.19027 1.01889 0.94661 0.94916 1.41157 1.27775 1.23960 1.20745 0.74203 1.22465 1.00397 0.99238 0.96218 1.20906 0.97396 0.83999 0.94953 1.44199 1.64571 1.02527 1.20104 1.19926 1.25468 1.14160 0.88494 0.92719 1.25862 1.01406 0.99553 0.95649 1.70771 1.05542 1.40961 1.38024 0.83535 0.75232 0.75601 0.76218 1.21095 1.22006 1.22116 0.93221 0.94148 0.92662 0.92365 0.91827 0.77724 0.82116 0.77173 0.82909 0.92472 0.92300 0.96077 0.90105 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.02 37.16 0.34 -2.72 16 2 C 0.17 3.37 3.27 -67.82 -0.22 3.15 16 3 H 0.07 1.35 7.93 -51.93 -0.41 0.93 16 4 C -0.13 -2.10 4.99 -26.84 -0.13 -2.23 16 5 C 0.15 2.47 2.21 -67.88 -0.15 2.32 16 6 H 0.09 1.65 5.93 -51.93 -0.31 1.34 16 7 N -0.72 -9.49 5.07 -55.12 -0.28 -9.77 16 8 C 0.59 8.58 7.74 -12.94 -0.10 8.48 16 9 O -0.52 -9.56 16.53 5.17 0.09 -9.47 16 10 C 0.01 0.15 7.03 -81.86 -0.58 -0.42 16 11 C -0.08 -1.05 10.58 -39.11 -0.41 -1.46 16 12 C -0.04 -0.48 8.20 -38.61 -0.32 -0.80 16 13 O -0.17 -1.82 10.68 3.22 0.03 -1.79 16 14 C 0.01 0.07 12.02 29.40 0.35 0.42 16 15 C -0.20 -1.60 10.89 -39.69 -0.43 -2.03 16 16 C 0.01 0.09 8.11 -83.95 -0.68 -0.59 16 17 N -0.53 -5.24 6.08 -7.04 -0.04 -5.28 16 18 H 0.42 2.86 8.16 -40.82 -0.33 2.52 16 19 C -0.14 -2.72 5.65 -26.61 -0.15 -2.87 16 20 C 0.15 3.55 4.29 -3.72 -0.02 3.54 16 21 N -0.59 -14.07 2.54 -165.03 -0.42 -14.49 16 22 C -0.35 -9.47 9.48 -15.05 -0.14 -9.61 16 23 H 0.06 1.48 7.94 -52.49 -0.42 1.06 16 24 C -0.02 -0.61 4.69 -17.43 -0.08 -0.69 16 25 N -0.91 -27.03 12.45 55.49 0.69 -26.34 16 26 Si 1.06 24.86 29.98 -169.99 -5.10 19.76 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 30 H 0.05 0.94 5.74 -51.93 -0.30 0.64 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.39 3.87 7.69 -40.82 -0.31 3.56 16 36 H 0.16 1.93 8.06 -52.49 -0.42 1.50 16 37 H 0.21 0.50 8.06 -52.48 -0.42 0.08 16 38 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.51 7.23 -51.93 -0.38 0.13 16 42 H 0.08 2.11 6.38 -51.93 -0.33 1.78 16 43 H 0.27 8.07 6.71 -40.82 -0.27 7.79 16 LS Contribution 349.57 15.07 5.27 5.27 Total: -1.00 -33.37 349.57 -8.15 -41.52 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.66 Total: 6.11 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.73 Total: -5.53 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.05 Total: -55.88 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.12 Total: -11.26 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.10 Total: 19.76 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.37 -8.15 -41.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947364947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.329 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds