Wall clock time and date at job start Tue Mar 31 2020 12:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.09005 * 109.45529 * 301.22915 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21721 * 120.00138 * 0.02562 * 8 7 5 10 10 C 1.46490 * 119.99564 * 179.97438 * 8 7 5 11 11 C 1.37781 * 125.85487 * 179.69264 * 10 8 7 12 12 C 1.39939 * 107.68330 * 179.90240 * 11 10 8 13 13 O 1.35119 * 145.13729 * 179.97438 * 12 11 10 14 14 C 1.34373 * 109.62413 * 180.37461 * 13 12 11 15 15 C 1.34461 * 109.45065 * 0.02562 * 14 13 12 16 16 C 1.39133 * 107.40484 * 0.36336 * 12 11 10 17 17 N 1.37106 * 108.11147 * 359.77499 * 16 12 11 18 18 H 0.97005 * 125.74450 * 180.02562 * 17 16 12 19 19 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 20 20 C 1.53188 * 109.30760 * 298.63191 * 19 5 4 21 21 N 1.46920 * 108.77580 * 54.63833 * 20 19 5 22 22 C 1.36939 * 120.63582 * 126.36663 * 21 20 19 23 23 H 1.07995 * 120.00292 * 209.22921 * 22 21 20 24 24 C 1.38821 * 119.99775 * 29.22866 * 22 21 20 25 25 N 1.31613 * 119.99866 * 24.23336 * 24 22 21 26 26 Si 1.86800 * 119.99862 * 204.23488 * 24 22 21 27 27 H 1.48493 * 109.46799 * 179.97438 * 26 24 22 28 28 H 1.48503 * 109.46833 * 299.99850 * 26 24 22 29 29 H 1.48503 * 109.47246 * 59.99528 * 26 24 22 30 30 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 31 31 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 32 32 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 33 33 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 34 34 H 1.09003 * 109.36332 * 185.33608 * 4 2 1 35 35 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 36 36 H 1.07998 * 126.15946 * 0.02562 * 11 10 8 37 37 H 1.08006 * 125.27963 * 180.02562 * 14 13 12 38 38 H 1.08001 * 126.41730 * 180.02562 * 15 14 13 39 39 H 1.09004 * 109.49599 * 178.68183 * 19 5 4 40 40 H 1.08999 * 109.49891 * 58.58386 * 19 5 4 41 41 H 1.08993 * 109.59025 * 294.84561 * 20 19 5 42 42 H 1.09004 * 109.70226 * 174.48951 * 20 19 5 43 43 H 0.97003 * 120.00561 * 5.76988 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2809 1.0994 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5285 -4.4456 2.1708 10 6 1.9365 -4.6979 4.0050 11 6 1.3854 -5.8412 4.5414 12 6 2.1196 -6.1703 5.6863 13 8 2.2476 -7.0455 6.7077 14 6 3.2749 -6.6771 7.4917 15 6 3.8349 -5.5582 6.9995 16 6 3.1122 -5.2068 5.8354 17 7 2.9944 -4.3105 4.8046 18 1 3.5591 -3.5349 4.6608 19 6 2.2843 -2.8431 -0.0582 20 6 1.7740 -2.1421 -1.3211 21 7 2.0226 -0.6996 -1.1945 22 6 2.7052 -0.0210 -2.1685 23 1 3.2873 0.8517 -1.9118 24 6 2.6490 -0.4549 -3.4860 25 7 1.6257 -1.1718 -3.8996 26 14 4.0259 -0.0214 -4.6716 27 1 3.7298 -0.6000 -6.0067 28 1 4.1351 1.4552 -4.7846 29 1 5.3075 -0.5753 -4.1657 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5084 -0.8931 33 1 1.5987 -0.2724 2.1349 34 1 3.1241 -0.6413 1.2936 35 1 2.8564 -2.5412 2.8798 36 1 0.5403 -6.3863 4.1478 37 1 3.6003 -7.1989 8.3796 38 1 4.6790 -5.0275 7.4147 39 1 2.0200 -3.8999 -0.0966 40 1 3.3678 -2.7405 0.0022 41 1 0.7043 -2.3203 -1.4310 42 1 2.3004 -2.5283 -2.1940 43 1 0.8715 -1.3264 -3.3094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947364947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:10 Heat of formation + Delta-G solvation = 20.900389 kcal Electronic energy + Delta-G solvation = -26334.195132 eV Core-core repulsion = 22574.641378 eV Total energy + Delta-G solvation = -3759.553755 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.93409 -41.47839 -40.19622 -39.18863 -36.32477 -34.53851 -33.35273 -32.71063 -31.77484 -31.21692 -29.40584 -28.49374 -26.20813 -24.96430 -23.68407 -23.05705 -22.69035 -21.74708 -21.34563 -20.28099 -19.62755 -19.02868 -18.09193 -17.58853 -17.29317 -16.53709 -16.35708 -16.18295 -15.89565 -15.52164 -15.38076 -15.16588 -14.93887 -14.68937 -14.52287 -14.29611 -14.17069 -13.83054 -13.67186 -13.46406 -12.81659 -12.79457 -12.66267 -12.52489 -12.34910 -11.99631 -11.95525 -11.80358 -11.50697 -11.45245 -11.09469 -11.05228 -10.47018 -10.24036 -9.68071 -8.92863 -8.91237 -8.22312 -5.39194 -0.09968 1.17748 1.46725 1.58771 1.65897 1.67503 1.71048 1.84548 2.16202 2.23529 2.66519 3.23977 3.46884 3.58761 3.63519 3.77456 3.92459 3.94420 4.16318 4.27438 4.29030 4.38236 4.45974 4.54133 4.59601 4.66328 4.71095 4.74875 4.75283 4.95280 4.97062 5.01151 5.04446 5.15958 5.20034 5.25266 5.33258 5.42448 5.52629 5.54277 5.88993 6.12329 6.27056 6.40838 6.43725 6.98934 7.08471 7.79514 8.25590 9.03129 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.002630 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.008964 B =10645.534813 C =10835.993171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.118 4.118 5 C 0.163 3.837 6 H 0.072 0.928 7 N -0.704 5.704 8 C 0.590 3.410 9 O -0.564 6.564 10 C -0.003 4.003 11 C -0.094 4.094 12 C -0.077 4.077 13 O -0.187 6.187 14 C 0.028 3.972 15 C -0.214 4.214 16 C 0.016 3.984 17 N -0.517 5.517 18 H 0.435 0.565 19 C -0.129 4.129 20 C 0.164 3.836 21 N -0.606 5.606 22 C -0.350 4.350 23 H 0.056 0.944 24 C -0.078 4.078 25 N -0.946 5.946 26 Si 1.113 2.887 27 H -0.297 1.297 28 H -0.274 1.274 29 H -0.279 1.279 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.027 0.973 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.410 0.590 36 H 0.155 0.845 37 H 0.260 0.740 38 H 0.185 0.815 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.000 1.000 42 H 0.043 0.957 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.757 -5.924 26.151 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.055 3.945 3 H 0.085 0.915 4 C -0.157 4.157 5 C 0.059 3.941 6 H 0.090 0.910 7 N -0.354 5.354 8 C 0.377 3.623 9 O -0.442 6.442 10 C -0.116 4.116 11 C -0.122 4.122 12 C -0.128 4.128 13 O -0.085 6.085 14 C -0.039 4.039 15 C -0.235 4.235 16 C -0.099 4.099 17 N -0.122 5.122 18 H 0.276 0.724 19 C -0.170 4.170 20 C 0.038 3.962 21 N -0.330 5.330 22 C -0.480 4.480 23 H 0.074 0.926 24 C -0.274 4.274 25 N -0.588 5.588 26 Si 0.938 3.062 27 H -0.223 1.223 28 H -0.200 1.200 29 H -0.206 1.206 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.247 0.753 36 H 0.172 0.828 37 H 0.275 0.725 38 H 0.202 0.798 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.018 0.982 42 H 0.061 0.939 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.550 -6.506 24.116 25.823 hybrid contribution -0.365 0.678 1.040 1.294 sum 6.185 -5.828 25.156 26.553 Atomic orbital electron populations 1.22231 0.98018 1.00554 1.00794 1.20604 0.92246 0.95425 0.86177 0.91493 1.22065 1.02054 0.92635 0.98984 1.20784 0.98764 0.92005 0.82591 0.91035 1.45836 1.35037 1.26374 1.28191 1.17049 0.82268 0.80347 0.82608 1.90877 1.29574 1.66569 1.57224 1.19893 0.95372 0.99738 0.96586 1.20028 1.01998 0.96809 0.93326 1.19382 1.03265 0.94436 0.95757 1.84032 1.46789 1.45780 1.31929 1.25130 0.86117 0.95994 0.96613 1.21019 1.05848 1.01214 0.95397 1.19535 1.01397 0.93765 0.95171 1.41020 1.27016 1.24214 1.19974 0.72399 1.22252 1.00528 0.98500 0.95688 1.20627 0.95672 0.84406 0.95543 1.44392 1.64966 1.02816 1.20797 1.20208 1.24796 1.13811 0.89159 0.92649 1.27181 1.02663 0.99715 0.97846 1.70892 1.06242 1.43610 1.38016 0.82874 0.73179 0.76369 0.73746 1.22327 1.19999 1.20555 0.94279 0.90387 0.95405 0.88666 0.90740 0.75321 0.82772 0.72475 0.79780 0.93169 0.91847 0.98240 0.93886 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.73 9.02 71.98 0.65 -5.08 16 2 C 0.16 6.19 3.27 44.83 0.15 6.33 16 3 H 0.07 2.56 7.93 -2.39 -0.02 2.54 16 4 C -0.12 -3.40 4.99 30.53 0.15 -3.25 16 5 C 0.16 5.15 2.21 45.02 0.10 5.25 16 6 H 0.07 2.61 5.93 -2.38 -0.01 2.60 16 7 N -0.70 -17.28 5.07 -446.51 -2.26 -19.55 16 8 C 0.59 17.05 7.74 86.39 0.67 17.72 16 9 O -0.56 -21.36 16.53 -4.41 -0.07 -21.44 16 10 C 0.00 -0.08 7.03 40.19 0.28 0.20 16 11 C -0.09 -2.42 10.58 22.57 0.24 -2.18 16 12 C -0.08 -1.82 8.20 22.90 0.19 -1.63 16 13 O -0.19 -3.71 10.68 -11.38 -0.12 -3.83 16 14 C 0.03 0.30 12.02 66.96 0.80 1.10 16 15 C -0.21 -2.53 10.89 22.20 0.24 -2.29 16 16 C 0.02 0.30 8.11 39.32 0.32 0.62 16 17 N -0.52 -9.02 6.08 -176.19 -1.07 -10.09 16 18 H 0.43 4.54 8.16 -92.70 -0.76 3.79 16 19 C -0.13 -4.98 5.65 30.67 0.17 -4.81 16 20 C 0.16 7.91 4.29 86.36 0.37 8.28 16 21 N -0.61 -29.29 2.54 -676.04 -1.72 -31.01 16 22 C -0.35 -19.06 9.48 84.04 0.80 -18.26 16 23 H 0.06 2.97 7.94 -2.91 -0.02 2.95 16 24 C -0.08 -4.41 4.69 84.87 0.40 -4.01 16 25 N -0.95 -58.40 12.45 21.65 0.27 -58.13 16 26 Si 1.11 50.74 29.98 68.60 2.06 52.80 16 27 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 29 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 30 H 0.04 1.49 5.74 -2.39 -0.01 1.48 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.41 6.83 7.69 -92.71 -0.71 6.12 16 36 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 37 H 0.26 -0.17 8.06 -2.91 -0.02 -0.19 16 38 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 40 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.00 -0.02 7.23 -2.39 -0.02 -0.04 16 42 H 0.04 2.37 6.38 -2.38 -0.02 2.36 16 43 H 0.25 16.05 6.71 -92.71 -0.62 15.43 16 Total: -1.00 -77.26 349.57 2.35 -74.91 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -0.26 Total: 18.31 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.53 Total: -1.99 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -4.79 Total: -118.77 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.19 Total: -25.27 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.06 Total: 52.80 kcal Total: -77.26 2.35 -74.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947364947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.814 kcal (2) G-P(sol) polarization free energy of solvation -77.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds