Wall clock time and date at job start Tue Mar 31 2020 12:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46007 * 2 1 4 4 C 1.53043 * 109.46117 * 119.96165 * 2 1 3 5 5 C 1.53191 * 109.31308 * 181.38519 * 4 2 1 6 6 N 1.46927 * 108.77571 * 305.36328 * 5 4 2 7 7 C 1.36935 * 120.63403 * 233.63452 * 6 5 4 8 8 H 1.07998 * 120.00153 * 27.65959 * 7 6 5 9 9 C 1.38813 * 119.99895 * 207.66766 * 7 6 5 10 10 N 1.31616 * 120.00171 * 17.36247 * 9 7 6 11 11 Si 1.86802 * 119.99575 * 197.35648 * 9 7 6 12 12 H 1.48497 * 109.47101 * 90.00256 * 11 9 7 13 13 H 1.48503 * 109.47025 * 210.00083 * 11 9 7 14 14 H 1.48496 * 109.47628 * 330.00051 * 11 9 7 15 15 C 1.46924 * 118.73581 * 53.60905 * 6 5 4 16 16 C 1.53043 * 109.45947 * 240.03022 * 2 1 3 17 17 H 1.09001 * 109.49485 * 298.59992 * 16 2 1 18 18 N 1.46495 * 109.49641 * 58.66238 * 16 2 1 19 19 C 1.34784 * 119.99860 * 204.99723 * 18 16 2 20 20 O 1.21723 * 120.00145 * 0.02562 * 19 18 16 21 21 C 1.46495 * 119.99860 * 180.02562 * 19 18 16 22 22 C 1.37781 * 125.85717 * 179.68770 * 21 19 18 23 23 C 1.39933 * 107.68564 * 179.87971 * 22 21 19 24 24 O 1.35117 * 145.13874 * 180.02562 * 23 22 21 25 25 C 1.34379 * 109.62427 * 180.32895 * 24 23 22 26 26 C 1.34462 * 109.44882 * 0.02562 * 25 24 23 27 27 C 1.39133 * 107.40525 * 0.38791 * 23 22 21 28 28 N 1.37114 * 108.10899 * 359.76255 * 27 23 22 29 29 H 0.97002 * 125.73905 * 179.97438 * 28 27 23 30 30 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46884 * 299.96806 * 1 2 3 32 32 H 1.08997 * 109.46860 * 59.96815 * 1 2 3 33 33 H 1.09003 * 109.49624 * 301.34115 * 4 2 1 34 34 H 1.09001 * 109.49672 * 61.43310 * 4 2 1 35 35 H 1.09001 * 109.58101 * 185.57964 * 5 4 2 36 36 H 1.08996 * 109.70331 * 65.22241 * 5 4 2 37 37 H 0.96995 * 120.00127 * 180.02562 * 10 9 7 38 38 H 1.09004 * 109.58764 * 186.60328 * 15 6 5 39 39 H 1.08998 * 109.58618 * 66.17903 * 15 6 5 40 40 H 0.96994 * 120.00473 * 25.00490 * 18 16 2 41 41 H 1.07994 * 126.15377 * 0.03132 * 22 21 19 42 42 H 1.08006 * 125.27838 * 179.97438 * 25 24 23 43 43 H 1.08001 * 126.41999 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 3.5714 -0.6885 1.2643 6 7 4.0679 -1.2489 0.0001 7 6 4.9757 -2.2741 0.0001 8 1 5.0086 -2.9663 0.8284 9 6 5.8539 -2.4235 -1.0645 10 7 6.0603 -1.4218 -1.8930 11 14 6.7428 -4.0463 -1.3212 12 1 5.9252 -4.9257 -2.1948 13 1 8.0576 -3.7943 -1.9639 14 1 6.9523 -4.7090 -0.0089 15 6 3.5714 -0.6887 -1.2642 16 6 2.0399 -0.7208 -1.2501 17 1 1.6973 -1.7556 -1.2385 18 7 1.5256 -0.0489 -2.4459 19 6 1.3971 -0.7325 -3.6004 20 8 1.7080 -1.9084 -3.6492 21 6 0.8834 -0.0604 -4.7963 22 6 0.7092 -0.6383 -6.0349 23 6 0.1978 0.3415 -6.8931 24 8 -0.2202 0.6053 -8.1506 25 6 -0.6003 1.8911 -8.2395 26 6 -0.4379 2.4895 -7.0464 27 6 0.0754 1.5162 -6.1576 28 7 0.4962 1.2632 -4.8774 29 1 0.5185 1.9057 -4.1510 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5133 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 1.6572 -0.2206 2.1399 34 1 1.6979 -1.7555 1.2385 35 1 3.9417 -1.2844 2.0985 36 1 3.9164 0.3402 1.3685 37 1 6.6736 -1.5264 -2.6371 38 1 3.9417 -1.2847 -2.0984 39 1 3.9143 0.3408 -1.3673 40 1 1.2776 0.8880 -2.4070 41 1 0.9259 -1.6637 -6.2957 42 1 -0.9770 2.3700 -9.1313 43 1 -0.6578 3.5203 -6.8108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966381497.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:02 Heat of formation + Delta-G solvation = 46.545954 kcal Electronic energy + Delta-G solvation = -26736.433341 eV Core-core repulsion = 22977.991662 eV Total energy + Delta-G solvation = -3758.441679 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.99698 -40.14520 -38.82869 -37.43176 -34.43876 -33.22171 -32.46482 -31.02880 -30.67684 -29.39343 -28.03427 -27.29184 -24.25933 -23.73718 -21.97579 -21.63978 -21.06955 -20.75132 -19.96966 -19.35538 -18.33962 -17.08127 -16.83900 -16.32992 -15.96549 -15.29887 -14.98691 -14.60612 -14.40733 -13.78968 -13.74136 -13.65173 -13.58439 -13.40898 -13.23837 -12.96392 -12.90942 -12.43648 -12.06024 -11.82715 -11.70144 -11.63288 -10.90577 -10.72737 -10.69878 -10.48499 -10.19126 -10.17343 -10.08030 -9.93314 -9.66292 -9.52426 -8.69116 -8.67011 -8.42840 -7.92616 -6.67630 -5.75792 -3.19262 0.97926 2.20559 2.40921 2.58480 2.83063 3.40717 3.46209 3.51376 3.52549 3.55881 4.44948 4.54427 4.69156 4.94282 5.10696 5.16529 5.19578 5.34628 5.36679 5.41902 5.49620 5.56993 5.73170 5.85247 5.93151 5.97314 6.03368 6.06640 6.18579 6.22314 6.32653 6.41186 6.45366 6.51572 6.66996 6.71448 6.83633 6.93480 7.05305 7.18845 7.26909 7.69671 7.75567 7.84683 8.42556 8.48540 9.22401 9.86341 10.40647 11.32322 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014386 B = 0.003756 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.896720 B = 7453.229467 C = 8866.688543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.258 4.258 8 H 0.067 0.933 9 C 0.008 3.992 10 N -0.899 5.899 11 Si 0.902 3.098 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.279 1.279 15 C 0.166 3.834 16 C 0.124 3.876 17 H 0.086 0.914 18 N -0.714 5.714 19 C 0.583 3.417 20 O -0.510 6.510 21 C 0.021 3.979 22 C -0.086 4.086 23 C -0.038 4.038 24 O -0.169 6.169 25 C 0.006 3.994 26 C -0.201 4.201 27 C 0.004 3.996 28 N -0.532 5.532 29 H 0.419 0.581 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.018 0.982 37 H 0.254 0.746 38 H 0.097 0.903 39 H 0.017 0.983 40 H 0.386 0.614 41 H 0.161 0.839 42 H 0.210 0.790 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.638 10.520 -6.037 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.388 4.388 8 H 0.085 0.915 9 C -0.192 4.192 10 N -0.543 5.543 11 Si 0.732 3.268 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.204 1.204 15 C 0.039 3.961 16 C 0.020 3.980 17 H 0.105 0.895 18 N -0.364 5.364 19 C 0.368 3.632 20 O -0.384 6.384 21 C -0.092 4.092 22 C -0.113 4.113 23 C -0.090 4.090 24 O -0.066 6.066 25 C -0.062 4.062 26 C -0.223 4.223 27 C -0.109 4.109 28 N -0.136 5.136 29 H 0.257 0.743 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.035 0.965 40 H 0.219 0.781 41 H 0.178 0.822 42 H 0.227 0.773 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.235 9.483 -6.260 19.006 hybrid contribution 0.313 0.431 0.129 0.548 sum -14.922 9.914 -6.131 18.936 Atomic orbital electron populations 1.21855 0.95986 1.01716 1.00612 1.21318 0.94547 0.99659 0.95626 0.91537 1.22071 0.98971 1.00110 0.95328 1.20965 0.90771 0.96500 0.90232 1.43953 1.48119 1.39839 0.99095 1.19155 1.09864 1.03237 1.06497 0.91526 1.25030 0.97104 0.97419 0.99607 1.70005 1.37524 1.29049 1.17694 0.86299 0.78692 0.83799 0.78023 1.21144 1.21782 1.20427 1.21111 0.86254 0.97541 0.91241 1.22097 0.98532 0.96490 0.80925 0.89547 1.45948 1.66150 1.13539 1.10778 1.16788 0.78574 0.86394 0.81412 1.90931 1.49085 1.14829 1.83570 1.20547 1.09407 0.82980 0.96272 1.19925 1.04624 0.98927 0.87840 1.19300 1.09655 0.96693 0.83323 1.84017 1.67150 1.27790 1.27692 1.24003 1.01539 0.81286 0.99403 1.20528 1.10114 0.99811 0.91829 1.18997 1.08263 0.97140 0.86455 1.41157 1.53604 1.09924 1.08962 0.74314 0.92749 0.93048 0.93495 0.92557 0.91978 0.92548 0.96435 0.93598 0.88516 0.96529 0.78108 0.82172 0.77326 0.83043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.02 37.16 0.34 -1.45 16 2 C -0.09 -1.41 2.27 -90.57 -0.21 -1.61 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.04 5.36 -26.61 -0.14 -2.18 16 5 C 0.14 2.87 6.52 -3.71 -0.02 2.84 16 6 N -0.59 -14.67 2.99 -172.32 -0.52 -15.19 16 7 C -0.26 -7.19 9.59 -15.06 -0.14 -7.33 16 8 H 0.07 1.82 7.89 -52.49 -0.41 1.40 16 9 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 10 N -0.90 -26.76 11.19 55.49 0.62 -26.14 16 11 Si 0.90 22.52 29.59 -169.99 -5.03 17.49 16 12 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 C 0.17 3.95 4.89 -3.71 -0.02 3.93 16 16 C 0.12 2.33 2.07 -67.81 -0.14 2.19 16 17 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 18 N -0.71 -11.14 4.36 -55.05 -0.24 -11.38 16 19 C 0.58 10.27 7.75 -12.93 -0.10 10.17 16 20 O -0.51 -11.28 16.53 5.17 0.09 -11.20 16 21 C 0.02 0.31 7.03 -81.86 -0.58 -0.27 16 22 C -0.09 -1.30 10.58 -39.11 -0.41 -1.71 16 23 C -0.04 -0.53 8.20 -38.61 -0.32 -0.85 16 24 O -0.17 -2.11 10.68 3.21 0.03 -2.08 16 25 C 0.01 0.05 12.02 29.40 0.35 0.40 16 26 C -0.20 -1.88 10.89 -39.70 -0.43 -2.31 16 27 C 0.00 0.05 8.11 -83.95 -0.68 -0.63 16 28 N -0.53 -6.24 6.08 -7.04 -0.04 -6.28 16 29 H 0.42 3.56 8.16 -40.82 -0.33 3.23 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.52 7.36 -51.93 -0.38 0.14 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.10 2.75 6.04 -51.93 -0.31 2.43 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.39 4.60 7.40 -40.82 -0.30 4.30 16 41 H 0.16 2.34 8.06 -52.49 -0.42 1.91 16 42 H 0.21 0.78 8.06 -52.48 -0.42 0.36 16 43 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -34.48 353.74 -8.26 -42.74 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.91 Total: 5.38 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.59 Total: 1.32 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -0.18 Total: -58.99 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.12 Total: -13.27 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.48 -8.26 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966381497.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.284 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds