Wall clock time and date at job start Tue Mar 31 2020 12:58:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09002 * 109.46007 * 2 1
4 4 C 1.53043 * 109.46117 * 119.96165 * 2 1 3
5 5 C 1.53191 * 109.31308 * 181.38519 * 4 2 1
6 6 N 1.46927 * 108.77571 * 305.36328 * 5 4 2
7 7 C 1.36935 * 120.63403 * 233.63452 * 6 5 4
8 8 H 1.07998 * 120.00153 * 27.65959 * 7 6 5
9 9 C 1.38813 * 119.99895 * 207.66766 * 7 6 5
10 10 N 1.31616 * 120.00171 * 17.36247 * 9 7 6
11 11 Si 1.86802 * 119.99575 * 197.35648 * 9 7 6
12 12 H 1.48497 * 109.47101 * 90.00256 * 11 9 7
13 13 H 1.48503 * 109.47025 * 210.00083 * 11 9 7
14 14 H 1.48496 * 109.47628 * 330.00051 * 11 9 7
15 15 C 1.46924 * 118.73581 * 53.60905 * 6 5 4
16 16 C 1.53043 * 109.45947 * 240.03022 * 2 1 3
17 17 H 1.09001 * 109.49485 * 298.59992 * 16 2 1
18 18 N 1.46495 * 109.49641 * 58.66238 * 16 2 1
19 19 C 1.34784 * 119.99860 * 204.99723 * 18 16 2
20 20 O 1.21723 * 120.00145 * 0.02562 * 19 18 16
21 21 C 1.46495 * 119.99860 * 180.02562 * 19 18 16
22 22 C 1.37781 * 125.85717 * 179.68770 * 21 19 18
23 23 C 1.39933 * 107.68564 * 179.87971 * 22 21 19
24 24 O 1.35117 * 145.13874 * 180.02562 * 23 22 21
25 25 C 1.34379 * 109.62427 * 180.32895 * 24 23 22
26 26 C 1.34462 * 109.44882 * 0.02562 * 25 24 23
27 27 C 1.39133 * 107.40525 * 0.38791 * 23 22 21
28 28 N 1.37114 * 108.10899 * 359.76255 * 27 23 22
29 29 H 0.97002 * 125.73905 * 179.97438 * 28 27 23
30 30 H 1.08995 * 109.47038 * 179.97438 * 1 2 3
31 31 H 1.08996 * 109.46884 * 299.96806 * 1 2 3
32 32 H 1.08997 * 109.46860 * 59.96815 * 1 2 3
33 33 H 1.09003 * 109.49624 * 301.34115 * 4 2 1
34 34 H 1.09001 * 109.49672 * 61.43310 * 4 2 1
35 35 H 1.09001 * 109.58101 * 185.57964 * 5 4 2
36 36 H 1.08996 * 109.70331 * 65.22241 * 5 4 2
37 37 H 0.96995 * 120.00127 * 180.02562 * 10 9 7
38 38 H 1.09004 * 109.58764 * 186.60328 * 15 6 5
39 39 H 1.08998 * 109.58618 * 66.17903 * 15 6 5
40 40 H 0.96994 * 120.00473 * 25.00490 * 18 16 2
41 41 H 1.07994 * 126.15377 * 0.03132 * 22 21 19
42 42 H 1.08006 * 125.27838 * 179.97438 * 25 24 23
43 43 H 1.08001 * 126.41999 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 6 2.0399 -0.7207 1.2502
5 6 3.5714 -0.6885 1.2643
6 7 4.0679 -1.2489 0.0001
7 6 4.9757 -2.2741 0.0001
8 1 5.0086 -2.9663 0.8284
9 6 5.8539 -2.4235 -1.0645
10 7 6.0603 -1.4218 -1.8930
11 14 6.7428 -4.0463 -1.3212
12 1 5.9252 -4.9257 -2.1948
13 1 8.0576 -3.7943 -1.9639
14 1 6.9523 -4.7090 -0.0089
15 6 3.5714 -0.6887 -1.2642
16 6 2.0399 -0.7208 -1.2501
17 1 1.6973 -1.7556 -1.2385
18 7 1.5256 -0.0489 -2.4459
19 6 1.3971 -0.7325 -3.6004
20 8 1.7080 -1.9084 -3.6492
21 6 0.8834 -0.0604 -4.7963
22 6 0.7092 -0.6383 -6.0349
23 6 0.1978 0.3415 -6.8931
24 8 -0.2202 0.6053 -8.1506
25 6 -0.6003 1.8911 -8.2395
26 6 -0.4379 2.4895 -7.0464
27 6 0.0754 1.5162 -6.1576
28 7 0.4962 1.2632 -4.8774
29 1 0.5185 1.9057 -4.1510
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5133 0.8902
32 1 -0.3633 0.5143 -0.8897
33 1 1.6572 -0.2206 2.1399
34 1 1.6979 -1.7555 1.2385
35 1 3.9417 -1.2844 2.0985
36 1 3.9164 0.3402 1.3685
37 1 6.6736 -1.5264 -2.6371
38 1 3.9417 -1.2847 -2.0984
39 1 3.9143 0.3408 -1.3673
40 1 1.2776 0.8880 -2.4070
41 1 0.9259 -1.6637 -6.2957
42 1 -0.9770 2.3700 -9.1313
43 1 -0.6578 3.5203 -6.8108
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000966381497.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:58:02
Heat of formation + Delta-G solvation = 46.545954 kcal
Electronic energy + Delta-G solvation = -26736.433341 eV
Core-core repulsion = 22977.991662 eV
Total energy + Delta-G solvation = -3758.441679 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.153 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.99698 -40.14520 -38.82869 -37.43176 -34.43876 -33.22171 -32.46482 -31.02880
-30.67684 -29.39343 -28.03427 -27.29184 -24.25933 -23.73718 -21.97579 -21.63978
-21.06955 -20.75132 -19.96966 -19.35538 -18.33962 -17.08127 -16.83900 -16.32992
-15.96549 -15.29887 -14.98691 -14.60612 -14.40733 -13.78968 -13.74136 -13.65173
-13.58439 -13.40898 -13.23837 -12.96392 -12.90942 -12.43648 -12.06024 -11.82715
-11.70144 -11.63288 -10.90577 -10.72737 -10.69878 -10.48499 -10.19126 -10.17343
-10.08030 -9.93314 -9.66292 -9.52426 -8.69116 -8.67011 -8.42840 -7.92616
-6.67630 -5.75792 -3.19262 0.97926 2.20559 2.40921 2.58480 2.83063
3.40717 3.46209 3.51376 3.52549 3.55881 4.44948 4.54427 4.69156
4.94282 5.10696 5.16529 5.19578 5.34628 5.36679 5.41902 5.49620
5.56993 5.73170 5.85247 5.93151 5.97314 6.03368 6.06640 6.18579
6.22314 6.32653 6.41186 6.45366 6.51572 6.66996 6.71448 6.83633
6.93480 7.05305 7.18845 7.26909 7.69671 7.75567 7.84683 8.42556
8.48540 9.22401 9.86341 10.40647 11.32322
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.014386 B = 0.003756 C = 0.003157
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1945.896720 B = 7453.229467 C = 8866.688543
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.092 4.092
3 H 0.066 0.934
4 C -0.125 4.125
5 C 0.142 3.858
6 N -0.587 5.587
7 C -0.258 4.258
8 H 0.067 0.933
9 C 0.008 3.992
10 N -0.899 5.899
11 Si 0.902 3.098
12 H -0.285 1.285
13 H -0.291 1.291
14 H -0.279 1.279
15 C 0.166 3.834
16 C 0.124 3.876
17 H 0.086 0.914
18 N -0.714 5.714
19 C 0.583 3.417
20 O -0.510 6.510
21 C 0.021 3.979
22 C -0.086 4.086
23 C -0.038 4.038
24 O -0.169 6.169
25 C 0.006 3.994
26 C -0.201 4.201
27 C 0.004 3.996
28 N -0.532 5.532
29 H 0.419 0.581
30 H 0.053 0.947
31 H 0.050 0.950
32 H 0.046 0.954
33 H 0.056 0.944
34 H 0.061 0.939
35 H 0.056 0.944
36 H 0.018 0.982
37 H 0.254 0.746
38 H 0.097 0.903
39 H 0.017 0.983
40 H 0.386 0.614
41 H 0.161 0.839
42 H 0.210 0.790
43 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.638 10.520 -6.037 19.791
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.111 4.111
3 H 0.085 0.915
4 C -0.165 4.165
5 C 0.015 3.985
6 N -0.310 5.310
7 C -0.388 4.388
8 H 0.085 0.915
9 C -0.192 4.192
10 N -0.543 5.543
11 Si 0.732 3.268
12 H -0.211 1.211
13 H -0.218 1.218
14 H -0.204 1.204
15 C 0.039 3.961
16 C 0.020 3.980
17 H 0.105 0.895
18 N -0.364 5.364
19 C 0.368 3.632
20 O -0.384 6.384
21 C -0.092 4.092
22 C -0.113 4.113
23 C -0.090 4.090
24 O -0.066 6.066
25 C -0.062 4.062
26 C -0.223 4.223
27 C -0.109 4.109
28 N -0.136 5.136
29 H 0.257 0.743
30 H 0.073 0.927
31 H 0.070 0.930
32 H 0.065 0.935
33 H 0.074 0.926
34 H 0.080 0.920
35 H 0.075 0.925
36 H 0.036 0.964
37 H 0.064 0.936
38 H 0.115 0.885
39 H 0.035 0.965
40 H 0.219 0.781
41 H 0.178 0.822
42 H 0.227 0.773
43 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -15.235 9.483 -6.260 19.006
hybrid contribution 0.313 0.431 0.129 0.548
sum -14.922 9.914 -6.131 18.936
Atomic orbital electron populations
1.21855 0.95986 1.01716 1.00612 1.21318 0.94547 0.99659 0.95626
0.91537 1.22071 0.98971 1.00110 0.95328 1.20965 0.90771 0.96500
0.90232 1.43953 1.48119 1.39839 0.99095 1.19155 1.09864 1.03237
1.06497 0.91526 1.25030 0.97104 0.97419 0.99607 1.70005 1.37524
1.29049 1.17694 0.86299 0.78692 0.83799 0.78023 1.21144 1.21782
1.20427 1.21111 0.86254 0.97541 0.91241 1.22097 0.98532 0.96490
0.80925 0.89547 1.45948 1.66150 1.13539 1.10778 1.16788 0.78574
0.86394 0.81412 1.90931 1.49085 1.14829 1.83570 1.20547 1.09407
0.82980 0.96272 1.19925 1.04624 0.98927 0.87840 1.19300 1.09655
0.96693 0.83323 1.84017 1.67150 1.27790 1.27692 1.24003 1.01539
0.81286 0.99403 1.20528 1.10114 0.99811 0.91829 1.18997 1.08263
0.97140 0.86455 1.41157 1.53604 1.09924 1.08962 0.74314 0.92749
0.93048 0.93495 0.92557 0.91978 0.92548 0.96435 0.93598 0.88516
0.96529 0.78108 0.82172 0.77326 0.83043
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.78 9.02 37.16 0.34 -1.45 16
2 C -0.09 -1.41 2.27 -90.57 -0.21 -1.61 16
3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
4 C -0.13 -2.04 5.36 -26.61 -0.14 -2.18 16
5 C 0.14 2.87 6.52 -3.71 -0.02 2.84 16
6 N -0.59 -14.67 2.99 -172.32 -0.52 -15.19 16
7 C -0.26 -7.19 9.59 -15.06 -0.14 -7.33 16
8 H 0.07 1.82 7.89 -52.49 -0.41 1.40 16
9 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16
10 N -0.90 -26.76 11.19 55.49 0.62 -26.14 16
11 Si 0.90 22.52 29.59 -169.99 -5.03 17.49 16
12 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16
13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16
14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
15 C 0.17 3.95 4.89 -3.71 -0.02 3.93 16
16 C 0.12 2.33 2.07 -67.81 -0.14 2.19 16
17 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16
18 N -0.71 -11.14 4.36 -55.05 -0.24 -11.38 16
19 C 0.58 10.27 7.75 -12.93 -0.10 10.17 16
20 O -0.51 -11.28 16.53 5.17 0.09 -11.20 16
21 C 0.02 0.31 7.03 -81.86 -0.58 -0.27 16
22 C -0.09 -1.30 10.58 -39.11 -0.41 -1.71 16
23 C -0.04 -0.53 8.20 -38.61 -0.32 -0.85 16
24 O -0.17 -2.11 10.68 3.21 0.03 -2.08 16
25 C 0.01 0.05 12.02 29.40 0.35 0.40 16
26 C -0.20 -1.88 10.89 -39.70 -0.43 -2.31 16
27 C 0.00 0.05 8.11 -83.95 -0.68 -0.63 16
28 N -0.53 -6.24 6.08 -7.04 -0.04 -6.28 16
29 H 0.42 3.56 8.16 -40.82 -0.33 3.23 16
30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
32 H 0.05 0.52 7.36 -51.93 -0.38 0.14 16
33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
35 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16
36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16
37 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16
38 H 0.10 2.75 6.04 -51.93 -0.31 2.43 16
39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
40 H 0.39 4.60 7.40 -40.82 -0.30 4.30 16
41 H 0.16 2.34 8.06 -52.49 -0.42 1.91 16
42 H 0.21 0.78 8.06 -52.48 -0.42 0.36 16
43 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16
LS Contribution 353.74 15.07 5.33 5.33
Total: -1.00 -34.48 353.74 -8.26 -42.74
By element:
Atomic # 1 Polarization: 11.29 SS G_CDS: -5.91 Total: 5.38 kcal
Atomic # 6 Polarization: 3.92 SS G_CDS: -2.59 Total: 1.32 kcal
Atomic # 7 Polarization: -58.82 SS G_CDS: -0.18 Total: -58.99 kcal
Atomic # 8 Polarization: -13.39 SS G_CDS: 0.12 Total: -13.27 kcal
Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -34.48 -8.26 -42.74 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000966381497.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.284 kcal
(2) G-P(sol) polarization free energy of solvation -34.477 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.807 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.546 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds