Wall clock time and date at job start Tue Mar 31 2020 12:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46007 * 2 1 4 4 C 1.53043 * 109.46117 * 119.96165 * 2 1 3 5 5 C 1.53191 * 109.31308 * 181.38519 * 4 2 1 6 6 N 1.46927 * 108.77571 * 305.36328 * 5 4 2 7 7 C 1.36935 * 120.63403 * 233.63452 * 6 5 4 8 8 H 1.07998 * 120.00153 * 27.65959 * 7 6 5 9 9 C 1.38813 * 119.99895 * 207.66766 * 7 6 5 10 10 N 1.31616 * 120.00171 * 17.36247 * 9 7 6 11 11 Si 1.86802 * 119.99575 * 197.35648 * 9 7 6 12 12 H 1.48497 * 109.47101 * 90.00256 * 11 9 7 13 13 H 1.48503 * 109.47025 * 210.00083 * 11 9 7 14 14 H 1.48496 * 109.47628 * 330.00051 * 11 9 7 15 15 C 1.46924 * 118.73581 * 53.60905 * 6 5 4 16 16 C 1.53043 * 109.45947 * 240.03022 * 2 1 3 17 17 H 1.09001 * 109.49485 * 298.59992 * 16 2 1 18 18 N 1.46495 * 109.49641 * 58.66238 * 16 2 1 19 19 C 1.34784 * 119.99860 * 204.99723 * 18 16 2 20 20 O 1.21723 * 120.00145 * 0.02562 * 19 18 16 21 21 C 1.46495 * 119.99860 * 180.02562 * 19 18 16 22 22 C 1.37781 * 125.85717 * 179.68770 * 21 19 18 23 23 C 1.39933 * 107.68564 * 179.87971 * 22 21 19 24 24 O 1.35117 * 145.13874 * 180.02562 * 23 22 21 25 25 C 1.34379 * 109.62427 * 180.32895 * 24 23 22 26 26 C 1.34462 * 109.44882 * 0.02562 * 25 24 23 27 27 C 1.39133 * 107.40525 * 0.38791 * 23 22 21 28 28 N 1.37114 * 108.10899 * 359.76255 * 27 23 22 29 29 H 0.97002 * 125.73905 * 179.97438 * 28 27 23 30 30 H 1.08995 * 109.47038 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46884 * 299.96806 * 1 2 3 32 32 H 1.08997 * 109.46860 * 59.96815 * 1 2 3 33 33 H 1.09003 * 109.49624 * 301.34115 * 4 2 1 34 34 H 1.09001 * 109.49672 * 61.43310 * 4 2 1 35 35 H 1.09001 * 109.58101 * 185.57964 * 5 4 2 36 36 H 1.08996 * 109.70331 * 65.22241 * 5 4 2 37 37 H 0.96995 * 120.00127 * 180.02562 * 10 9 7 38 38 H 1.09004 * 109.58764 * 186.60328 * 15 6 5 39 39 H 1.08998 * 109.58618 * 66.17903 * 15 6 5 40 40 H 0.96994 * 120.00473 * 25.00490 * 18 16 2 41 41 H 1.07994 * 126.15377 * 0.03132 * 22 21 19 42 42 H 1.08006 * 125.27838 * 179.97438 * 25 24 23 43 43 H 1.08001 * 126.41999 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 3.5714 -0.6885 1.2643 6 7 4.0679 -1.2489 0.0001 7 6 4.9757 -2.2741 0.0001 8 1 5.0086 -2.9663 0.8284 9 6 5.8539 -2.4235 -1.0645 10 7 6.0603 -1.4218 -1.8930 11 14 6.7428 -4.0463 -1.3212 12 1 5.9252 -4.9257 -2.1948 13 1 8.0576 -3.7943 -1.9639 14 1 6.9523 -4.7090 -0.0089 15 6 3.5714 -0.6887 -1.2642 16 6 2.0399 -0.7208 -1.2501 17 1 1.6973 -1.7556 -1.2385 18 7 1.5256 -0.0489 -2.4459 19 6 1.3971 -0.7325 -3.6004 20 8 1.7080 -1.9084 -3.6492 21 6 0.8834 -0.0604 -4.7963 22 6 0.7092 -0.6383 -6.0349 23 6 0.1978 0.3415 -6.8931 24 8 -0.2202 0.6053 -8.1506 25 6 -0.6003 1.8911 -8.2395 26 6 -0.4379 2.4895 -7.0464 27 6 0.0754 1.5162 -6.1576 28 7 0.4962 1.2632 -4.8774 29 1 0.5185 1.9057 -4.1510 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5133 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 1.6572 -0.2206 2.1399 34 1 1.6979 -1.7555 1.2385 35 1 3.9417 -1.2844 2.0985 36 1 3.9164 0.3402 1.3685 37 1 6.6736 -1.5264 -2.6371 38 1 3.9417 -1.2847 -2.0984 39 1 3.9143 0.3408 -1.3673 40 1 1.2776 0.8880 -2.4070 41 1 0.9259 -1.6637 -6.2957 42 1 -0.9770 2.3700 -9.1313 43 1 -0.6578 3.5203 -6.8108 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966381497.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:02 Heat of formation + Delta-G solvation = 22.162103 kcal Electronic energy + Delta-G solvation = -26737.490705 eV Core-core repulsion = 22977.991662 eV Total energy + Delta-G solvation = -3759.499043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.92018 -41.42095 -40.07551 -38.94099 -36.17280 -34.79184 -33.32770 -32.85707 -31.76703 -30.86389 -29.26653 -28.80760 -25.98663 -25.08353 -23.30622 -22.67331 -22.64451 -21.73829 -21.42963 -20.72345 -19.38563 -18.78324 -18.09830 -17.39359 -17.27797 -16.80846 -16.47551 -16.08647 -15.75813 -15.43168 -15.29168 -15.02285 -14.79801 -14.64807 -14.46401 -14.22633 -14.08788 -13.66775 -13.57182 -13.29609 -13.06954 -12.78974 -12.76813 -12.59877 -12.35305 -12.18336 -11.91607 -11.65854 -11.60551 -11.23998 -11.14049 -11.07453 -10.56945 -10.23021 -9.66635 -8.90781 -8.70828 -7.90864 -5.36227 -0.06852 1.20281 1.40212 1.46262 1.48041 1.51483 1.69379 1.74871 2.21174 2.28629 2.48824 3.25854 3.59467 3.66082 3.76625 3.85128 3.95389 3.97823 4.13228 4.30660 4.45557 4.47611 4.56408 4.64153 4.69895 4.72340 4.76026 4.90840 4.96590 5.00716 5.09565 5.16382 5.17078 5.25056 5.34942 5.43296 5.44108 5.51748 5.54625 5.61432 5.75379 6.13216 6.30423 6.35891 6.49842 7.07060 7.12779 7.83641 8.32179 9.13928 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014386 B = 0.003756 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.896720 B = 7453.229467 C = 8866.688543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.082 0.918 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.609 5.609 7 C -0.264 4.264 8 H 0.069 0.931 9 C -0.049 4.049 10 N -0.930 5.930 11 Si 0.960 3.040 12 H -0.295 1.295 13 H -0.292 1.292 14 H -0.261 1.261 15 C 0.177 3.823 16 C 0.141 3.859 17 H 0.055 0.945 18 N -0.698 5.698 19 C 0.585 3.415 20 O -0.567 6.567 21 C -0.001 4.001 22 C -0.098 4.098 23 C -0.077 4.077 24 O -0.187 6.187 25 C 0.028 3.972 26 C -0.211 4.211 27 C 0.017 3.983 28 N -0.515 5.515 29 H 0.435 0.565 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.023 0.977 37 H 0.247 0.753 38 H 0.044 0.956 39 H 0.001 0.999 40 H 0.408 0.592 41 H 0.149 0.851 42 H 0.261 0.739 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.194 13.332 -5.802 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.100 0.900 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.394 4.394 8 H 0.087 0.913 9 C -0.245 4.245 10 N -0.576 5.576 11 Si 0.788 3.212 12 H -0.222 1.222 13 H -0.218 1.218 14 H -0.185 1.185 15 C 0.050 3.950 16 C 0.035 3.965 17 H 0.073 0.927 18 N -0.349 5.349 19 C 0.372 3.628 20 O -0.446 6.446 21 C -0.113 4.113 22 C -0.126 4.126 23 C -0.128 4.128 24 O -0.086 6.086 25 C -0.039 4.039 26 C -0.232 4.232 27 C -0.097 4.097 28 N -0.120 5.120 29 H 0.276 0.724 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.019 0.981 40 H 0.245 0.755 41 H 0.167 0.833 42 H 0.277 0.723 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.823 12.356 -5.960 22.491 hybrid contribution 1.050 -0.342 -0.052 1.105 sum -16.773 12.015 -6.012 21.491 Atomic orbital electron populations 1.21782 0.92929 1.01787 1.02817 1.21284 0.96928 0.99469 0.92686 0.89991 1.21972 0.95620 1.00333 0.97570 1.21188 0.93615 0.96240 0.87927 1.44231 1.48152 1.39834 1.01022 1.19504 1.09661 1.03986 1.06251 0.91329 1.25760 0.98604 1.00210 0.99894 1.70156 1.38536 1.30749 1.18179 0.85376 0.77246 0.80287 0.78294 1.22202 1.21820 1.18512 1.20804 0.89629 0.95144 0.89440 1.21603 0.94925 0.96120 0.83893 0.92704 1.45663 1.65226 1.14437 1.09530 1.17126 0.77544 0.85820 0.82320 1.90894 1.51710 1.17438 1.84551 1.19894 1.11899 0.84524 0.95014 1.19987 1.04736 0.99104 0.88806 1.19305 1.11711 0.97204 0.84599 1.84026 1.67588 1.30003 1.26938 1.25159 0.98319 0.79483 1.00946 1.21019 1.10238 1.00980 0.90984 1.19546 1.06539 0.97466 0.86156 1.40981 1.52625 1.08871 1.09562 0.72407 0.93791 0.90183 0.91980 0.88398 0.93054 0.92615 0.95941 0.94422 0.93779 0.98110 0.75536 0.83314 0.72293 0.79514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.02 71.98 0.65 -2.23 16 2 C -0.08 -2.40 2.27 -10.76 -0.02 -2.42 16 3 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.12 -3.51 5.36 30.67 0.16 -3.35 16 5 C 0.14 5.39 6.52 86.36 0.56 5.95 16 6 N -0.61 -31.30 2.99 -699.11 -2.09 -33.39 16 7 C -0.26 -15.17 9.59 84.03 0.81 -14.36 16 8 H 0.07 3.82 7.89 -2.91 -0.02 3.80 16 9 C -0.05 -2.90 4.91 84.86 0.42 -2.49 16 10 N -0.93 -58.27 11.19 21.65 0.24 -58.02 16 11 Si 0.96 48.09 29.59 68.60 2.03 50.12 16 12 H -0.29 -15.10 7.11 99.48 0.71 -14.39 16 13 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 14 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 15 C 0.18 8.85 4.89 86.36 0.42 9.27 16 16 C 0.14 5.37 2.07 45.07 0.09 5.46 16 17 H 0.05 2.47 7.58 -2.39 -0.02 2.45 16 18 N -0.70 -22.07 4.36 -446.29 -1.95 -24.01 16 19 C 0.58 21.70 7.75 86.39 0.67 22.37 16 20 O -0.57 -27.23 16.53 -4.42 -0.07 -27.31 16 21 C 0.00 -0.02 7.03 40.19 0.28 0.27 16 22 C -0.10 -3.14 10.58 22.57 0.24 -2.91 16 23 C -0.08 -2.16 8.20 22.90 0.19 -1.97 16 24 O -0.19 -4.38 10.68 -11.42 -0.12 -4.51 16 25 C 0.03 0.37 12.02 66.96 0.80 1.17 16 26 C -0.21 -3.10 10.89 22.20 0.24 -2.85 16 27 C 0.02 0.40 8.11 39.32 0.32 0.72 16 28 N -0.51 -11.45 6.08 -176.19 -1.07 -12.52 16 29 H 0.43 6.42 8.16 -92.71 -0.76 5.66 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.14 7.36 -2.39 -0.02 1.12 16 33 H 0.10 2.23 8.14 -2.39 -0.02 2.22 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 38 H 0.04 2.68 6.04 -2.38 -0.01 2.66 16 39 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.41 9.18 7.40 -92.71 -0.69 8.50 16 41 H 0.15 4.86 8.06 -2.91 -0.02 4.84 16 42 H 0.26 0.43 8.06 -2.91 -0.02 0.41 16 43 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -82.54 353.74 2.41 -80.14 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.39 Total: 16.88 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 5.83 Total: 12.62 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -4.87 Total: -127.95 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.19 Total: -31.81 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -82.54 2.41 -80.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966381497.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.298 kcal (2) G-P(sol) polarization free energy of solvation -82.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds