Wall clock time and date at job start Tue Mar 31 2020 12:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.44959 * 2 1 4 4 C 1.53034 * 109.48748 * 240.05101 * 2 1 3 5 5 C 1.53196 * 109.33856 * 178.64797 * 4 2 1 6 6 N 1.46927 * 108.77681 * 54.61753 * 5 4 2 7 7 C 1.36936 * 120.63228 * 126.41571 * 6 5 4 8 8 H 1.07995 * 120.00059 * 207.66199 * 7 6 5 9 9 C 1.38812 * 120.00069 * 27.65171 * 7 6 5 10 10 N 1.31620 * 120.00095 * 17.38460 * 9 7 6 11 11 Si 1.86802 * 120.00160 * 197.37980 * 9 7 6 12 12 H 1.48502 * 109.47007 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46933 * 120.00447 * 11 9 7 14 14 H 1.48504 * 109.46997 * 240.00180 * 11 9 7 15 15 C 1.46924 * 118.73795 * 306.39382 * 6 5 4 16 16 C 1.53043 * 109.45781 * 119.96364 * 2 1 3 17 17 H 1.08998 * 109.49703 * 61.40425 * 16 2 1 18 18 N 1.46498 * 109.49752 * 301.33551 * 16 2 1 19 19 C 1.34775 * 120.00066 * 155.06413 * 18 16 2 20 20 O 1.21730 * 119.99952 * 0.02562 * 19 18 16 21 21 C 1.46488 * 120.00154 * 180.02562 * 19 18 16 22 22 C 1.37784 * 125.85789 * 180.02562 * 21 19 18 23 23 C 1.39929 * 107.68854 * 180.02562 * 22 21 19 24 24 O 1.35122 * 145.14451 * 180.34017 * 23 22 21 25 25 C 1.34373 * 109.62555 * 180.02562 * 24 23 22 26 26 C 1.34461 * 109.45034 * 359.65165 * 25 24 23 27 27 C 1.39147 * 107.40247 * 0.02562 * 23 22 21 28 28 N 1.37106 * 108.10752 * 359.97438 * 27 23 22 29 29 H 0.97003 * 125.73840 * 179.97438 * 28 27 23 30 30 H 1.08992 * 109.47359 * 300.03687 * 1 2 3 31 31 H 1.09003 * 109.46961 * 60.03828 * 1 2 3 32 32 H 1.09002 * 109.46832 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.50151 * 58.67908 * 4 2 1 34 34 H 1.09010 * 109.49743 * 298.61066 * 4 2 1 35 35 H 1.09000 * 109.58605 * 294.82547 * 5 4 2 36 36 H 1.09001 * 109.58520 * 174.40598 * 5 4 2 37 37 H 0.96996 * 120.00469 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.58215 * 293.82057 * 15 6 5 39 39 H 1.09000 * 109.58846 * 173.40132 * 15 6 5 40 40 H 0.97002 * 119.99778 * 335.06685 * 18 16 2 41 41 H 1.08002 * 126.15701 * 0.02564 * 22 21 19 42 42 H 1.08003 * 125.27545 * 179.86632 * 25 24 23 43 43 H 1.08004 * 126.41864 * 180.24764 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0406 -0.7202 -1.2500 5 6 3.5721 -0.6888 -1.2637 6 7 4.0680 -1.2495 0.0006 7 6 4.9761 -2.2744 0.0007 8 1 5.0088 -2.9667 0.8289 9 6 5.8545 -2.4236 -1.0638 10 7 6.0611 -1.4217 -1.8920 11 14 6.7435 -4.0463 -1.3208 12 1 6.3412 -5.0045 -0.2601 13 1 6.3863 -4.6010 -2.6512 14 1 8.2102 -3.8230 -1.2552 15 6 3.5714 -0.6892 1.2648 16 6 2.0398 -0.7207 1.2502 17 1 1.6973 -1.7554 1.2387 18 7 1.5256 -0.0486 2.4459 19 6 1.3982 -0.7317 3.6007 20 8 1.7110 -1.9071 3.6503 21 6 0.8835 -0.0598 4.7963 22 6 0.7051 -0.6388 6.0338 23 6 0.1962 0.3418 6.8926 24 8 -0.2181 0.6068 8.1512 25 6 -0.6052 1.8907 8.2379 26 6 -0.4444 2.4885 7.0443 27 6 0.0708 1.5157 6.1561 28 7 0.4927 1.2629 4.8763 29 1 0.5128 1.9046 4.1492 30 1 -0.3633 0.5144 0.8896 31 1 -0.3633 0.5133 -0.8904 32 1 -0.3633 -1.0277 0.0005 33 1 1.6585 -0.2199 -2.1398 34 1 1.6981 -1.7551 -1.2391 35 1 3.9155 0.3406 -1.3666 36 1 3.9424 -1.2847 -2.0979 37 1 6.6751 -1.5257 -2.6356 38 1 3.9147 0.3402 1.3681 39 1 3.9412 -1.2854 2.0990 40 1 1.2766 0.8881 2.4065 41 1 0.9194 -1.6648 6.2942 42 1 -0.9832 2.3693 9.1293 43 1 -0.6664 3.5187 6.8080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966381500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:15 Heat of formation + Delta-G solvation = 45.801481 kcal Electronic energy + Delta-G solvation = -26408.391020 eV Core-core repulsion = 22649.917058 eV Total energy + Delta-G solvation = -3758.473962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.11176 -40.30358 -38.95073 -37.52159 -34.58592 -33.13495 -32.57019 -31.14207 -30.80370 -29.46041 -28.21182 -27.23633 -24.35064 -23.73427 -22.05698 -21.74421 -21.10982 -20.86660 -20.11970 -19.42264 -18.43840 -17.20006 -16.85974 -16.44506 -16.02957 -15.44690 -15.02770 -14.74650 -14.53206 -13.89847 -13.80295 -13.74518 -13.61826 -13.45052 -13.29288 -13.09029 -13.02431 -12.50556 -12.07908 -11.94368 -11.69848 -11.55603 -11.07684 -10.81819 -10.71413 -10.30916 -10.28650 -10.19538 -10.14772 -9.89869 -9.69410 -9.61115 -8.93677 -8.80661 -8.43272 -8.05108 -6.69492 -5.79269 -3.21309 0.84385 2.07675 2.29210 2.46922 2.70221 3.26394 3.35683 3.39438 3.47514 3.51852 4.34107 4.50459 4.58264 4.80747 5.03562 5.06181 5.21871 5.26797 5.30842 5.33459 5.43265 5.55812 5.61069 5.82615 5.88986 5.91208 5.99095 6.10352 6.10810 6.16276 6.23032 6.36070 6.49087 6.57421 6.60387 6.68425 6.78595 6.92667 6.94675 7.08646 7.32709 7.57310 7.62503 7.83578 8.22583 8.44905 9.21270 9.83320 10.38446 11.29558 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021496 B = 0.002940 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.281100 B = 9520.968434 C =10308.792517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.250 4.250 8 H 0.068 0.932 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.141 3.859 16 C 0.133 3.867 17 H 0.091 0.909 18 N -0.716 5.716 19 C 0.584 3.416 20 O -0.514 6.514 21 C 0.016 3.984 22 C -0.083 4.083 23 C -0.039 4.039 24 O -0.168 6.168 25 C 0.008 3.992 26 C -0.202 4.202 27 C 0.007 3.993 28 N -0.532 5.532 29 H 0.419 0.581 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.019 0.981 36 H 0.090 0.910 37 H 0.253 0.747 38 H 0.017 0.983 39 H 0.060 0.940 40 H 0.389 0.611 41 H 0.161 0.839 42 H 0.211 0.789 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 10.603 13.318 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.309 5.309 7 C -0.379 4.379 8 H 0.086 0.914 9 C -0.196 4.196 10 N -0.549 5.549 11 Si 0.732 3.268 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.218 1.218 15 C 0.013 3.987 16 C 0.028 3.972 17 H 0.109 0.891 18 N -0.366 5.366 19 C 0.370 3.630 20 O -0.389 6.389 21 C -0.097 4.097 22 C -0.111 4.111 23 C -0.091 4.091 24 O -0.066 6.066 25 C -0.060 4.060 26 C -0.224 4.224 27 C -0.106 4.106 28 N -0.136 5.136 29 H 0.257 0.743 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.079 0.921 40 H 0.222 0.778 41 H 0.179 0.821 42 H 0.228 0.772 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.444 9.562 13.279 22.501 hybrid contribution 0.307 0.448 -0.593 0.804 sum -15.137 10.011 12.686 22.142 Atomic orbital electron populations 1.21860 0.95977 1.01727 1.00613 1.21316 0.94539 0.99655 0.95516 0.91520 1.22250 1.00695 0.99627 0.94732 1.20859 0.87282 0.97333 0.90429 1.44005 1.48101 1.39785 0.99047 1.19275 1.09670 1.02759 1.06218 0.91411 1.25023 0.97221 0.97556 0.99838 1.70045 1.37806 1.29008 1.18025 0.86215 0.79065 0.83700 0.77817 1.20088 1.21537 1.21751 1.21197 0.89865 0.96725 0.90893 1.21867 0.96901 0.97069 0.81357 0.89113 1.46012 1.66114 1.13806 1.10684 1.16813 0.78495 0.86314 0.81423 1.90922 1.49439 1.14789 1.83729 1.20480 1.09902 0.83085 0.96216 1.19928 1.04477 0.98828 0.87851 1.19300 1.09778 0.96650 0.83328 1.84024 1.67084 1.27986 1.27519 1.24029 1.01200 0.81293 0.99441 1.20546 1.10101 0.99890 0.91829 1.19015 1.08046 0.97176 0.86403 1.41155 1.53458 1.10026 1.09006 0.74255 0.93668 0.92869 0.92736 0.92652 0.92292 0.96340 0.89147 0.93712 0.96532 0.92142 0.77838 0.82128 0.77249 0.82972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.02 37.16 0.34 -1.44 16 2 C -0.09 -1.38 2.27 -90.58 -0.21 -1.59 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.13 -2.39 5.36 -26.61 -0.14 -2.54 16 5 C 0.17 3.85 5.31 -3.71 -0.02 3.83 16 6 N -0.59 -14.66 3.00 -172.32 -0.52 -15.18 16 7 C -0.25 -6.96 9.59 -15.06 -0.14 -7.11 16 8 H 0.07 1.91 7.89 -52.49 -0.41 1.50 16 9 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 10 N -0.90 -26.12 11.19 55.49 0.62 -25.49 16 11 Si 0.90 22.00 29.59 -169.99 -5.03 16.97 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 C 0.14 3.00 6.09 -3.71 -0.02 2.98 16 16 C 0.13 2.28 2.06 -67.81 -0.14 2.14 16 17 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 18 N -0.72 -9.75 4.36 -55.05 -0.24 -9.99 16 19 C 0.58 8.93 7.75 -12.94 -0.10 8.83 16 20 O -0.51 -10.00 16.53 5.16 0.09 -9.92 16 21 C 0.02 0.20 7.03 -81.86 -0.58 -0.37 16 22 C -0.08 -1.11 10.58 -39.11 -0.41 -1.52 16 23 C -0.04 -0.49 8.20 -38.61 -0.32 -0.81 16 24 O -0.17 -1.89 10.68 3.21 0.03 -1.86 16 25 C 0.01 0.06 12.02 29.40 0.35 0.41 16 26 C -0.20 -1.65 10.89 -39.70 -0.43 -2.09 16 27 C 0.01 0.07 8.11 -83.95 -0.68 -0.61 16 28 N -0.53 -5.40 6.08 -7.04 -0.04 -5.44 16 29 H 0.42 2.95 8.16 -40.82 -0.33 2.61 16 30 H 0.04 0.48 7.36 -51.93 -0.38 0.10 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 37 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 1.39 7.93 -51.93 -0.41 0.98 16 40 H 0.39 3.96 7.40 -40.82 -0.30 3.66 16 41 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 42 H 0.21 0.57 8.06 -52.48 -0.42 0.15 16 43 H 0.15 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -33.54 353.74 -8.26 -41.81 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.91 Total: 3.68 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.59 Total: 0.09 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.18 Total: -56.10 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.12 Total: -11.77 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.54 -8.26 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966381500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.607 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds