Wall clock time and date at job start Tue Mar 31 2020 12:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.44959 * 2 1 4 4 C 1.53034 * 109.48748 * 240.05101 * 2 1 3 5 5 C 1.53196 * 109.33856 * 178.64797 * 4 2 1 6 6 N 1.46927 * 108.77681 * 54.61753 * 5 4 2 7 7 C 1.36936 * 120.63228 * 126.41571 * 6 5 4 8 8 H 1.07995 * 120.00059 * 207.66199 * 7 6 5 9 9 C 1.38812 * 120.00069 * 27.65171 * 7 6 5 10 10 N 1.31620 * 120.00095 * 17.38460 * 9 7 6 11 11 Si 1.86802 * 120.00160 * 197.37980 * 9 7 6 12 12 H 1.48502 * 109.47007 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.46933 * 120.00447 * 11 9 7 14 14 H 1.48504 * 109.46997 * 240.00180 * 11 9 7 15 15 C 1.46924 * 118.73795 * 306.39382 * 6 5 4 16 16 C 1.53043 * 109.45781 * 119.96364 * 2 1 3 17 17 H 1.08998 * 109.49703 * 61.40425 * 16 2 1 18 18 N 1.46498 * 109.49752 * 301.33551 * 16 2 1 19 19 C 1.34775 * 120.00066 * 155.06413 * 18 16 2 20 20 O 1.21730 * 119.99952 * 0.02562 * 19 18 16 21 21 C 1.46488 * 120.00154 * 180.02562 * 19 18 16 22 22 C 1.37784 * 125.85789 * 180.02562 * 21 19 18 23 23 C 1.39929 * 107.68854 * 180.02562 * 22 21 19 24 24 O 1.35122 * 145.14451 * 180.34017 * 23 22 21 25 25 C 1.34373 * 109.62555 * 180.02562 * 24 23 22 26 26 C 1.34461 * 109.45034 * 359.65165 * 25 24 23 27 27 C 1.39147 * 107.40247 * 0.02562 * 23 22 21 28 28 N 1.37106 * 108.10752 * 359.97438 * 27 23 22 29 29 H 0.97003 * 125.73840 * 179.97438 * 28 27 23 30 30 H 1.08992 * 109.47359 * 300.03687 * 1 2 3 31 31 H 1.09003 * 109.46961 * 60.03828 * 1 2 3 32 32 H 1.09002 * 109.46832 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.50151 * 58.67908 * 4 2 1 34 34 H 1.09010 * 109.49743 * 298.61066 * 4 2 1 35 35 H 1.09000 * 109.58605 * 294.82547 * 5 4 2 36 36 H 1.09001 * 109.58520 * 174.40598 * 5 4 2 37 37 H 0.96996 * 120.00469 * 179.97438 * 10 9 7 38 38 H 1.09006 * 109.58215 * 293.82057 * 15 6 5 39 39 H 1.09000 * 109.58846 * 173.40132 * 15 6 5 40 40 H 0.97002 * 119.99778 * 335.06685 * 18 16 2 41 41 H 1.08002 * 126.15701 * 0.02564 * 22 21 19 42 42 H 1.08003 * 125.27545 * 179.86632 * 25 24 23 43 43 H 1.08004 * 126.41864 * 180.24764 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0406 -0.7202 -1.2500 5 6 3.5721 -0.6888 -1.2637 6 7 4.0680 -1.2495 0.0006 7 6 4.9761 -2.2744 0.0007 8 1 5.0088 -2.9667 0.8289 9 6 5.8545 -2.4236 -1.0638 10 7 6.0611 -1.4217 -1.8920 11 14 6.7435 -4.0463 -1.3208 12 1 6.3412 -5.0045 -0.2601 13 1 6.3863 -4.6010 -2.6512 14 1 8.2102 -3.8230 -1.2552 15 6 3.5714 -0.6892 1.2648 16 6 2.0398 -0.7207 1.2502 17 1 1.6973 -1.7554 1.2387 18 7 1.5256 -0.0486 2.4459 19 6 1.3982 -0.7317 3.6007 20 8 1.7110 -1.9071 3.6503 21 6 0.8835 -0.0598 4.7963 22 6 0.7051 -0.6388 6.0338 23 6 0.1962 0.3418 6.8926 24 8 -0.2181 0.6068 8.1512 25 6 -0.6052 1.8907 8.2379 26 6 -0.4444 2.4885 7.0443 27 6 0.0708 1.5157 6.1561 28 7 0.4927 1.2629 4.8763 29 1 0.5128 1.9046 4.1492 30 1 -0.3633 0.5144 0.8896 31 1 -0.3633 0.5133 -0.8904 32 1 -0.3633 -1.0277 0.0005 33 1 1.6585 -0.2199 -2.1398 34 1 1.6981 -1.7551 -1.2391 35 1 3.9155 0.3406 -1.3666 36 1 3.9424 -1.2847 -2.0979 37 1 6.6751 -1.5257 -2.6356 38 1 3.9147 0.3402 1.3681 39 1 3.9412 -1.2854 2.0990 40 1 1.2766 0.8881 2.4065 41 1 0.9194 -1.6648 6.2942 42 1 -0.9832 2.3693 9.1293 43 1 -0.6664 3.5187 6.8080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966381500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:14 Heat of formation + Delta-G solvation = 22.751820 kcal Electronic energy + Delta-G solvation = -26409.390528 eV Core-core repulsion = 22649.917058 eV Total energy + Delta-G solvation = -3759.473471 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.90789 -41.44396 -40.08591 -38.95954 -36.26661 -34.59904 -33.31327 -33.04896 -31.75242 -30.86549 -29.36828 -28.70809 -26.01137 -25.03304 -23.34117 -22.70994 -22.65712 -21.72677 -21.43261 -20.76348 -19.36999 -18.75531 -18.09247 -17.38294 -17.25924 -16.77866 -16.46508 -16.21902 -15.75807 -15.43960 -15.29466 -15.08674 -14.79984 -14.63996 -14.46033 -14.22240 -14.15228 -13.65625 -13.59135 -13.22749 -13.15349 -12.77621 -12.76226 -12.68539 -12.31745 -12.04469 -11.96214 -11.72083 -11.55613 -11.29616 -11.16564 -11.06399 -10.62871 -10.24623 -9.65298 -8.90079 -8.70838 -7.92216 -5.37241 -0.06580 1.20834 1.42828 1.44812 1.49393 1.56357 1.70240 1.73761 2.20293 2.26008 2.50034 3.22160 3.59141 3.65478 3.70671 3.82147 3.96753 3.98141 4.08085 4.31522 4.42137 4.46368 4.51629 4.63557 4.70253 4.74481 4.77310 4.90854 4.92958 5.01680 5.02866 5.06690 5.13049 5.18905 5.37869 5.42911 5.45115 5.51655 5.56804 5.62224 5.76060 6.14840 6.31141 6.35437 6.47957 7.05077 7.11986 7.80728 8.30187 9.13654 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021496 B = 0.002940 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.281100 B = 9520.968434 C =10308.792517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 H 0.083 0.917 4 C -0.123 4.123 5 C 0.171 3.829 6 N -0.606 5.606 7 C -0.266 4.266 8 H 0.053 0.947 9 C -0.044 4.044 10 N -0.929 5.929 11 Si 0.964 3.036 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.288 1.288 15 C 0.143 3.857 16 C 0.151 3.849 17 H 0.062 0.938 18 N -0.699 5.699 19 C 0.588 3.412 20 O -0.565 6.565 21 C -0.001 4.001 22 C -0.095 4.095 23 C -0.077 4.077 24 O -0.187 6.187 25 C 0.027 3.973 26 C -0.212 4.212 27 C 0.017 3.983 28 N -0.515 5.515 29 H 0.435 0.565 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.006 0.994 36 H 0.055 0.945 37 H 0.252 0.748 38 H 0.022 0.978 39 H 0.031 0.969 40 H 0.410 0.590 41 H 0.152 0.848 42 H 0.259 0.741 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.177 13.233 14.307 26.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 H 0.101 0.899 4 C -0.162 4.162 5 C 0.046 3.954 6 N -0.330 5.330 7 C -0.397 4.397 8 H 0.071 0.929 9 C -0.239 4.239 10 N -0.574 5.574 11 Si 0.792 3.208 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.215 1.215 15 C 0.016 3.984 16 C 0.044 3.956 17 H 0.080 0.920 18 N -0.350 5.350 19 C 0.376 3.624 20 O -0.443 6.443 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.128 4.128 24 O -0.086 6.086 25 C -0.040 4.040 26 C -0.233 4.233 27 C -0.098 4.098 28 N -0.121 5.121 29 H 0.276 0.724 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.024 0.976 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.040 0.960 39 H 0.050 0.950 40 H 0.247 0.753 41 H 0.170 0.830 42 H 0.275 0.725 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -17.817 12.257 14.256 25.902 hybrid contribution 1.016 -0.279 -0.721 1.277 sum -16.801 11.977 13.535 24.677 Atomic orbital electron populations 1.21785 0.92852 1.01846 1.02840 1.21242 0.96948 0.99443 0.92498 0.89891 1.22081 0.96601 0.99933 0.97611 1.20732 0.90721 0.95444 0.88488 1.44219 1.48223 1.39719 1.00812 1.19425 1.10496 1.03614 1.06118 0.92883 1.25701 0.98137 1.00449 0.99655 1.70165 1.38435 1.30490 1.18348 0.85264 0.77779 0.80074 0.77691 1.19885 1.20962 1.21530 1.21232 0.92783 0.95889 0.88536 1.21348 0.93785 0.96601 0.83819 0.91959 1.45674 1.65358 1.14662 1.09259 1.17065 0.77501 0.85726 0.82117 1.90897 1.51726 1.17140 1.84567 1.19865 1.12038 0.84424 0.95004 1.20012 1.04563 0.99047 0.88717 1.19360 1.11731 0.97247 0.84479 1.84030 1.67545 1.30074 1.26937 1.25127 0.98284 0.79610 1.00940 1.21014 1.10228 1.01004 0.91099 1.19525 1.06558 0.97451 0.86252 1.40999 1.52494 1.09122 1.09490 0.72368 0.91391 0.90722 0.93723 0.89751 0.93451 0.97637 0.92657 0.93851 0.96020 0.95014 0.75293 0.82986 0.72492 0.79702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.02 71.98 0.65 -2.24 16 2 C -0.08 -2.34 2.27 -10.77 -0.02 -2.37 16 3 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.12 -4.31 5.36 30.67 0.16 -4.15 16 5 C 0.17 8.10 5.31 86.36 0.46 8.56 16 6 N -0.61 -31.47 3.00 -699.09 -2.09 -33.56 16 7 C -0.27 -15.50 9.59 84.03 0.81 -14.70 16 8 H 0.05 3.17 7.89 -2.91 -0.02 3.14 16 9 C -0.04 -2.50 4.91 84.86 0.42 -2.09 16 10 N -0.93 -55.15 11.19 21.65 0.24 -54.91 16 11 Si 0.96 46.48 29.59 68.60 2.03 48.51 16 12 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 14 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 15 C 0.14 6.29 6.09 86.36 0.53 6.81 16 16 C 0.15 5.18 2.06 45.07 0.09 5.27 16 17 H 0.06 2.55 7.58 -2.39 -0.02 2.54 16 18 N -0.70 -18.49 4.36 -446.29 -1.95 -20.43 16 19 C 0.59 18.33 7.75 86.39 0.67 19.00 16 20 O -0.56 -23.25 16.53 -4.44 -0.07 -23.32 16 21 C 0.00 -0.02 7.03 40.19 0.28 0.27 16 22 C -0.10 -2.61 10.58 22.57 0.24 -2.37 16 23 C -0.08 -1.89 8.20 22.90 0.19 -1.70 16 24 O -0.19 -3.88 10.68 -11.42 -0.12 -4.00 16 25 C 0.03 0.30 12.02 66.96 0.80 1.11 16 26 C -0.21 -2.63 10.89 22.20 0.24 -2.38 16 27 C 0.02 0.33 8.11 39.33 0.32 0.65 16 28 N -0.52 -9.44 6.08 -176.19 -1.07 -10.51 16 29 H 0.44 4.80 8.16 -92.71 -0.76 4.05 16 30 H 0.07 1.15 7.36 -2.39 -0.02 1.14 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.06 2.99 6.04 -2.39 -0.01 2.98 16 37 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.03 1.54 7.93 -2.39 -0.02 1.52 16 40 H 0.41 7.34 7.40 -92.71 -0.69 6.65 16 41 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 42 H 0.26 -0.02 8.06 -2.91 -0.02 -0.04 16 43 H 0.19 1.02 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -78.29 353.74 2.41 -75.89 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -0.39 Total: 12.68 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.83 Total: 9.67 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -4.87 Total: -119.42 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.20 Total: -27.33 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -78.29 2.41 -75.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966381500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.639 kcal (2) G-P(sol) polarization free energy of solvation -78.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds