Wall clock time and date at job start Tue Mar 31 2020 12:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.41232 * 2 1 4 4 C 1.54913 * 110.36743 * 122.28987 * 2 1 3 5 5 C 1.55153 * 101.58113 * 155.85233 * 4 2 1 6 6 H 1.09000 * 110.72056 * 82.85938 * 5 4 2 7 7 N 1.46501 * 110.72169 * 206.13759 * 5 4 2 8 8 C 1.36935 * 120.00322 * 199.97875 * 7 5 4 9 9 H 1.08006 * 119.99729 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00149 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99956 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99978 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47251 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47085 * 120.00122 * 12 10 8 15 15 H 1.48502 * 109.47353 * 239.99957 * 12 10 8 16 16 C 1.54328 * 102.94527 * 324.49876 * 5 4 2 17 17 N 1.47024 * 107.39686 * 22.11479 * 16 5 4 18 18 C 1.34780 * 125.64931 * 181.10129 * 17 16 5 19 19 O 1.21543 * 120.00389 * 174.31748 * 18 17 16 20 20 C 1.47859 * 119.99676 * 354.32019 * 18 17 16 21 21 C 1.39705 * 120.07341 * 7.17939 * 20 18 17 22 22 C 1.38063 * 120.14594 * 179.97438 * 21 20 18 23 23 C 1.38099 * 120.29392 * 0.02562 * 22 21 20 24 24 C 1.39665 * 120.14585 * 359.97438 * 23 22 21 25 25 C 1.47858 * 120.07346 * 179.97438 * 24 23 22 26 26 N 1.34780 * 120.00130 * 359.97438 * 25 24 23 27 27 O 1.21552 * 120.00181 * 180.02562 * 25 24 23 28 28 C 1.39293 * 120.07463 * 186.90341 * 20 18 17 29 29 H 1.08994 * 109.47231 * 297.70764 * 1 2 3 30 30 H 1.08996 * 109.47176 * 57.70888 * 1 2 3 31 31 H 1.09007 * 109.46699 * 177.70690 * 1 2 3 32 32 H 1.08997 * 111.00166 * 37.77505 * 4 2 1 33 33 H 1.08999 * 110.99960 * 273.92604 * 4 2 1 34 34 H 0.97004 * 119.99465 * 19.96975 * 7 5 4 35 35 H 0.96999 * 119.99750 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.88472 * 141.60469 * 16 5 4 37 37 H 1.08998 * 109.88440 * 262.62493 * 16 5 4 38 38 H 1.07996 * 119.93130 * 359.95635 * 21 20 18 39 39 H 1.07994 * 119.85523 * 180.02562 * 22 21 20 40 40 H 1.08007 * 119.92480 * 180.02562 * 23 22 21 41 41 H 0.97000 * 119.99667 * 359.97438 * 26 25 24 42 42 H 0.97000 * 120.00391 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.14545 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0692 -0.7758 1.2277 5 6 3.4778 -1.1996 0.7343 6 1 4.1945 -0.3900 0.8723 7 7 3.9251 -2.4127 1.4232 8 6 5.2570 -2.7290 1.4575 9 1 5.9777 -2.0844 0.9764 10 6 5.6808 -3.8782 2.1107 11 7 4.8025 -4.6635 2.6974 12 14 7.4976 -4.3100 2.1569 13 1 8.2717 -3.2727 1.4290 14 1 7.9563 -4.3701 3.5680 15 1 7.7091 -5.6304 1.5111 16 6 3.2495 -1.4768 -0.7666 17 7 2.0425 -0.7411 -1.1709 18 6 1.4977 -0.7425 -2.4036 19 8 0.4387 -0.1795 -2.6008 20 6 2.1883 -1.4292 -3.5162 21 6 3.3245 -2.2019 -3.2644 22 6 3.9703 -2.8441 -4.3021 23 6 3.4987 -2.7271 -5.5948 24 6 2.3638 -1.9577 -5.8604 25 6 1.8606 -1.8331 -7.2452 26 7 2.4976 -2.4619 -8.2528 27 8 0.8730 -1.1627 -7.4750 28 6 1.7040 -1.3116 -4.8170 29 1 -0.3633 0.4778 0.9098 30 1 -0.3633 0.5490 -0.8687 31 1 -0.3633 -1.0269 -0.0411 32 1 1.4511 -1.6479 1.4409 33 1 2.1398 -0.1262 2.1001 34 1 3.2777 -2.9918 1.8551 35 1 5.0987 -5.4663 3.1542 36 1 4.1066 -1.1278 -1.3426 37 1 3.1042 -2.5448 -0.9284 38 1 3.6989 -2.2970 -2.2559 39 1 4.8480 -3.4406 -4.1020 40 1 4.0082 -3.2324 -6.4020 41 1 3.2863 -2.9960 -8.0696 42 1 2.1678 -2.3799 -9.1613 43 1 0.8236 -0.7187 -5.0165 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989050412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:43 Heat of formation + Delta-G solvation = -6.555645 kcal Electronic energy + Delta-G solvation = -26318.003983 eV Core-core repulsion = 22557.259645 eV Total energy + Delta-G solvation = -3760.744338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.72451 -39.81496 -38.11416 -37.27633 -34.27188 -34.16321 -32.62995 -31.49952 -31.19263 -30.29700 -28.51476 -25.99432 -24.39495 -24.14779 -23.58523 -21.56584 -20.98917 -20.41181 -19.40576 -18.16577 -17.34731 -17.05332 -16.73778 -16.25841 -15.83642 -15.30353 -14.99086 -14.73772 -14.43461 -14.37064 -13.93255 -13.85887 -13.76725 -13.38091 -13.32540 -12.81321 -12.63857 -12.39379 -11.97515 -11.88235 -11.72549 -11.50609 -11.25072 -11.02285 -10.74706 -10.56110 -10.39779 -10.25926 -10.10627 -10.02162 -9.84530 -9.53453 -9.19107 -9.16718 -9.06363 -8.40274 -7.19346 -5.94179 -3.25984 0.52421 0.95183 2.48255 3.00724 3.08828 3.27378 3.32151 3.38515 3.40840 3.81460 4.37848 4.46813 4.50678 4.69189 4.77747 4.96088 5.06018 5.12823 5.18654 5.25030 5.41454 5.46294 5.49880 5.57653 5.76454 5.78983 5.82740 5.94025 6.00141 6.04091 6.10513 6.16036 6.18446 6.35414 6.39506 6.42288 6.45529 6.59494 6.67021 6.77399 7.00829 7.54416 7.71216 7.96521 8.22625 8.31215 9.35185 9.88324 10.23157 11.27528 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.003730 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.574042 B = 7505.883738 C = 9487.360002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.075 0.925 4 C -0.137 4.137 5 C 0.171 3.829 6 H 0.068 0.932 7 N -0.713 5.713 8 C -0.253 4.253 9 H 0.074 0.926 10 C -0.006 4.006 11 N -0.927 5.927 12 Si 0.907 3.093 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.060 3.940 17 N -0.603 5.603 18 C 0.572 3.428 19 O -0.541 6.541 20 C -0.136 4.136 21 C -0.093 4.093 22 C -0.133 4.133 23 C -0.067 4.067 24 C -0.158 4.158 25 C 0.567 3.433 26 N -0.853 5.853 27 O -0.538 6.538 28 C -0.003 4.003 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.388 0.612 35 H 0.257 0.743 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.178 0.822 39 H 0.138 0.862 40 H 0.128 0.872 41 H 0.401 0.599 42 H 0.405 0.595 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 4.377 -14.878 15.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 H 0.093 0.907 4 C -0.176 4.176 5 C 0.058 3.942 6 H 0.086 0.914 7 N -0.353 5.353 8 C -0.383 4.383 9 H 0.092 0.908 10 C -0.203 4.203 11 N -0.574 5.574 12 Si 0.738 3.262 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.217 1.217 16 C -0.066 4.066 17 N -0.336 5.336 18 C 0.362 3.638 19 O -0.420 6.420 20 C -0.139 4.139 21 C -0.110 4.110 22 C -0.151 4.151 23 C -0.086 4.086 24 C -0.161 4.161 25 C 0.353 3.647 26 N -0.417 5.417 27 O -0.415 6.415 28 C -0.022 4.022 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.222 0.778 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.194 0.806 39 H 0.156 0.844 40 H 0.145 0.855 41 H 0.230 0.770 42 H 0.236 0.764 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.780 5.116 -14.982 16.074 hybrid contribution 1.278 -0.992 -0.216 1.632 sum -1.502 4.124 -15.199 15.820 Atomic orbital electron populations 1.22140 0.94031 1.02821 1.02712 1.21975 0.95017 0.95240 0.84307 0.90683 1.23157 0.97620 1.00469 0.96317 1.21233 0.93401 0.91189 0.88357 0.91410 1.42406 1.06116 1.23822 1.62950 1.19286 0.83885 1.05437 1.29737 0.90809 1.24780 0.97754 0.97566 1.00232 1.69667 1.32537 1.15354 1.39821 0.86135 0.84678 0.77993 0.77424 1.20403 1.21739 1.21745 1.23789 0.85658 0.96549 1.00581 1.48542 1.28475 1.47942 1.08677 1.17834 0.84393 0.80235 0.81386 1.90711 1.21795 1.46437 1.83081 1.19929 0.97995 1.02172 0.93800 1.23409 0.92612 0.91676 1.03317 1.21200 1.01079 1.00719 0.92069 1.21475 0.94087 0.95462 0.97541 1.19741 0.98987 1.04064 0.93292 1.18240 0.82699 0.78540 0.85208 1.43736 1.33337 1.54047 1.10570 1.90836 1.25836 1.40165 1.84647 1.21338 0.97406 0.93598 0.89897 0.92335 0.90056 0.92647 0.90360 0.89961 0.77759 0.93294 0.91281 0.89734 0.80577 0.84435 0.85464 0.76965 0.76447 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 8.51 37.16 0.32 -1.92 16 2 C 0.14 1.96 3.80 -66.24 -0.25 1.71 16 3 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.14 -2.03 6.11 -24.58 -0.15 -2.18 16 5 C 0.17 2.93 3.59 -66.10 -0.24 2.69 16 6 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 7 N -0.71 -15.75 5.17 -51.65 -0.27 -16.01 16 8 C -0.25 -6.25 9.98 -15.06 -0.15 -6.40 16 9 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 10 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 11 N -0.93 -25.98 13.06 55.49 0.72 -25.26 16 12 Si 0.91 20.62 29.55 -169.99 -5.02 15.60 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 C 0.06 0.93 4.62 -3.06 -0.01 0.91 16 17 N -0.60 -9.30 3.25 -168.54 -0.55 -9.85 16 18 C 0.57 9.45 7.65 -12.32 -0.09 9.36 16 19 O -0.54 -10.11 13.98 5.33 0.07 -10.04 16 20 C -0.14 -1.99 5.87 -105.02 -0.62 -2.61 16 21 C -0.09 -1.20 8.61 -39.10 -0.34 -1.53 16 22 C -0.13 -1.39 10.02 -39.70 -0.40 -1.79 16 23 C -0.07 -0.62 9.54 -39.10 -0.37 -0.99 16 24 C -0.16 -1.88 5.87 -105.02 -0.62 -2.49 16 25 C 0.57 6.69 8.05 -12.32 -0.10 6.59 16 26 N -0.85 -5.84 8.82 30.53 0.27 -5.57 16 27 O -0.54 -8.59 17.18 5.32 0.09 -8.49 16 28 C 0.00 -0.04 9.13 -38.78 -0.35 -0.39 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.27 6.11 -51.93 -0.32 0.95 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.23 7.92 -51.93 -0.41 0.82 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.39 9.30 7.71 -40.82 -0.31 8.98 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.07 1.00 6.74 -51.93 -0.35 0.64 16 37 H 0.08 1.42 6.61 -51.93 -0.34 1.07 16 38 H 0.18 2.37 2.72 -58.54 -0.16 2.21 16 39 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.13 0.68 6.39 -52.48 -0.34 0.34 16 41 H 0.40 1.56 6.85 -40.82 -0.28 1.28 16 42 H 0.40 2.20 8.93 -40.82 -0.36 1.84 16 43 H 0.15 2.32 7.25 -52.48 -0.38 1.94 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -32.23 351.31 -8.19 -40.42 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -5.34 Total: 13.21 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -3.47 Total: 0.69 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.18 Total: -56.69 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: 0.17 Total: -18.53 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.23 -8.19 -40.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989050412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.869 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds