Wall clock time and date at job start Tue Mar 31 2020 12:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.41232 * 2 1 4 4 C 1.54913 * 110.36743 * 122.28987 * 2 1 3 5 5 C 1.55153 * 101.58113 * 155.85233 * 4 2 1 6 6 H 1.09000 * 110.72056 * 82.85938 * 5 4 2 7 7 N 1.46501 * 110.72169 * 206.13759 * 5 4 2 8 8 C 1.36935 * 120.00322 * 199.97875 * 7 5 4 9 9 H 1.08006 * 119.99729 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00149 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99956 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99978 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47251 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.47085 * 120.00122 * 12 10 8 15 15 H 1.48502 * 109.47353 * 239.99957 * 12 10 8 16 16 C 1.54328 * 102.94527 * 324.49876 * 5 4 2 17 17 N 1.47024 * 107.39686 * 22.11479 * 16 5 4 18 18 C 1.34780 * 125.64931 * 181.10129 * 17 16 5 19 19 O 1.21543 * 120.00389 * 174.31748 * 18 17 16 20 20 C 1.47859 * 119.99676 * 354.32019 * 18 17 16 21 21 C 1.39705 * 120.07341 * 7.17939 * 20 18 17 22 22 C 1.38063 * 120.14594 * 179.97438 * 21 20 18 23 23 C 1.38099 * 120.29392 * 0.02562 * 22 21 20 24 24 C 1.39665 * 120.14585 * 359.97438 * 23 22 21 25 25 C 1.47858 * 120.07346 * 179.97438 * 24 23 22 26 26 N 1.34780 * 120.00130 * 359.97438 * 25 24 23 27 27 O 1.21552 * 120.00181 * 180.02562 * 25 24 23 28 28 C 1.39293 * 120.07463 * 186.90341 * 20 18 17 29 29 H 1.08994 * 109.47231 * 297.70764 * 1 2 3 30 30 H 1.08996 * 109.47176 * 57.70888 * 1 2 3 31 31 H 1.09007 * 109.46699 * 177.70690 * 1 2 3 32 32 H 1.08997 * 111.00166 * 37.77505 * 4 2 1 33 33 H 1.08999 * 110.99960 * 273.92604 * 4 2 1 34 34 H 0.97004 * 119.99465 * 19.96975 * 7 5 4 35 35 H 0.96999 * 119.99750 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.88472 * 141.60469 * 16 5 4 37 37 H 1.08998 * 109.88440 * 262.62493 * 16 5 4 38 38 H 1.07996 * 119.93130 * 359.95635 * 21 20 18 39 39 H 1.07994 * 119.85523 * 180.02562 * 22 21 20 40 40 H 1.08007 * 119.92480 * 180.02562 * 23 22 21 41 41 H 0.97000 * 119.99667 * 359.97438 * 26 25 24 42 42 H 0.97000 * 120.00391 * 180.02562 * 26 25 24 43 43 H 1.08003 * 120.14545 * 0.02562 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0692 -0.7758 1.2277 5 6 3.4778 -1.1996 0.7343 6 1 4.1945 -0.3900 0.8723 7 7 3.9251 -2.4127 1.4232 8 6 5.2570 -2.7290 1.4575 9 1 5.9777 -2.0844 0.9764 10 6 5.6808 -3.8782 2.1107 11 7 4.8025 -4.6635 2.6974 12 14 7.4976 -4.3100 2.1569 13 1 8.2717 -3.2727 1.4290 14 1 7.9563 -4.3701 3.5680 15 1 7.7091 -5.6304 1.5111 16 6 3.2495 -1.4768 -0.7666 17 7 2.0425 -0.7411 -1.1709 18 6 1.4977 -0.7425 -2.4036 19 8 0.4387 -0.1795 -2.6008 20 6 2.1883 -1.4292 -3.5162 21 6 3.3245 -2.2019 -3.2644 22 6 3.9703 -2.8441 -4.3021 23 6 3.4987 -2.7271 -5.5948 24 6 2.3638 -1.9577 -5.8604 25 6 1.8606 -1.8331 -7.2452 26 7 2.4976 -2.4619 -8.2528 27 8 0.8730 -1.1627 -7.4750 28 6 1.7040 -1.3116 -4.8170 29 1 -0.3633 0.4778 0.9098 30 1 -0.3633 0.5490 -0.8687 31 1 -0.3633 -1.0269 -0.0411 32 1 1.4511 -1.6479 1.4409 33 1 2.1398 -0.1262 2.1001 34 1 3.2777 -2.9918 1.8551 35 1 5.0987 -5.4663 3.1542 36 1 4.1066 -1.1278 -1.3426 37 1 3.1042 -2.5448 -0.9284 38 1 3.6989 -2.2970 -2.2559 39 1 4.8480 -3.4406 -4.1020 40 1 4.0082 -3.2324 -6.4020 41 1 3.2863 -2.9960 -8.0696 42 1 2.1678 -2.3799 -9.1613 43 1 0.8236 -0.7187 -5.0165 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989050412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:42 Heat of formation + Delta-G solvation = -30.214568 kcal Electronic energy + Delta-G solvation = -26319.029911 eV Core-core repulsion = 22557.259645 eV Total energy + Delta-G solvation = -3761.770266 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.85205 -40.85847 -39.18276 -38.56596 -35.95448 -35.03099 -33.73936 -33.19330 -32.15338 -31.34094 -30.09399 -27.19739 -25.95647 -25.13377 -24.92551 -22.71064 -22.02555 -21.72086 -20.51486 -19.22838 -18.99289 -17.95257 -17.90935 -17.43739 -16.85884 -16.68126 -16.26131 -15.91872 -15.60964 -15.47423 -15.33794 -15.19076 -14.87596 -14.73138 -14.47729 -14.28399 -13.76435 -13.50332 -13.31814 -13.10401 -12.94660 -12.84495 -12.79149 -12.48208 -12.17262 -12.04731 -11.81705 -11.67824 -11.53853 -11.28661 -10.98109 -10.80242 -10.68698 -10.17283 -10.11755 -9.65764 -9.02881 -7.90319 -5.20707 -0.41863 -0.05758 1.49850 1.53894 1.56041 1.64573 1.84316 1.99230 2.45018 2.60771 2.80704 3.28781 3.40296 3.69473 3.77042 3.79540 3.83695 3.88044 4.01239 4.11166 4.17750 4.28317 4.32489 4.49512 4.51108 4.59302 4.69980 4.72817 4.83009 4.85513 5.05595 5.10041 5.12707 5.16189 5.26899 5.28176 5.33347 5.51226 5.60429 5.69343 5.82869 6.29702 6.35147 6.44331 7.04537 7.22534 7.38173 8.08748 8.32815 9.32718 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012522 B = 0.003730 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.574042 B = 7505.883738 C = 9487.360002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.135 3.865 3 H 0.092 0.908 4 C -0.126 4.126 5 C 0.165 3.835 6 H 0.076 0.924 7 N -0.724 5.724 8 C -0.239 4.239 9 H 0.086 0.914 10 C -0.069 4.069 11 N -0.968 5.968 12 Si 0.967 3.033 13 H -0.261 1.261 14 H -0.302 1.302 15 H -0.296 1.296 16 C 0.074 3.926 17 N -0.603 5.603 18 C 0.565 3.435 19 O -0.572 6.572 20 C -0.155 4.155 21 C -0.099 4.099 22 C -0.128 4.128 23 C -0.043 4.043 24 C -0.162 4.162 25 C 0.564 3.436 26 N -0.823 5.823 27 O -0.590 6.590 28 C -0.022 4.022 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.376 0.624 35 H 0.250 0.750 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.171 0.829 39 H 0.168 0.832 40 H 0.179 0.821 41 H 0.419 0.581 42 H 0.415 0.585 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 4.181 -16.527 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.033 3.967 3 H 0.110 0.890 4 C -0.164 4.164 5 C 0.054 3.946 6 H 0.094 0.906 7 N -0.363 5.363 8 C -0.370 4.370 9 H 0.104 0.896 10 C -0.262 4.262 11 N -0.618 5.618 12 Si 0.797 3.203 13 H -0.185 1.185 14 H -0.229 1.229 15 H -0.223 1.223 16 C -0.051 4.051 17 N -0.335 5.335 18 C 0.356 3.644 19 O -0.454 6.454 20 C -0.158 4.158 21 C -0.116 4.116 22 C -0.145 4.145 23 C -0.061 4.061 24 C -0.165 4.165 25 C 0.351 3.649 26 N -0.388 5.388 27 O -0.471 6.471 28 C -0.042 4.042 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.208 0.792 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.188 0.812 39 H 0.186 0.814 40 H 0.196 0.804 41 H 0.252 0.748 42 H 0.248 0.752 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.361 4.939 -16.684 17.403 hybrid contribution 0.526 -0.895 0.202 1.057 sum 0.165 4.044 -16.482 16.971 Atomic orbital electron populations 1.22043 0.93886 1.01792 1.03166 1.22108 0.95171 0.95833 0.83576 0.89038 1.23069 0.95860 1.00369 0.97135 1.21421 0.94726 0.89529 0.88886 0.90569 1.42540 1.05161 1.25067 1.63504 1.19692 0.85159 1.04653 1.27531 0.89616 1.25500 1.01221 0.98237 1.01244 1.69818 1.34186 1.15947 1.41854 0.85167 0.80749 0.77721 0.76657 1.18481 1.22929 1.22334 1.23522 0.86260 0.95973 0.99370 1.48571 1.28347 1.47802 1.08789 1.18235 0.84156 0.79967 0.82025 1.90690 1.23162 1.47939 1.83620 1.19801 0.99170 1.03647 0.93140 1.23358 0.92294 0.92030 1.03938 1.21574 1.01391 0.99839 0.91704 1.21938 0.92254 0.93326 0.98591 1.19855 0.99700 1.04143 0.92781 1.18302 0.82310 0.78426 0.85907 1.43493 1.32963 1.52314 1.10043 1.90819 1.28269 1.42736 1.85302 1.21211 0.97415 0.94741 0.90866 0.89847 0.91748 0.94188 0.91520 0.88168 0.79198 0.94151 0.89658 0.90945 0.81249 0.81427 0.80428 0.74776 0.75221 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 8.51 71.98 0.61 -3.63 16 2 C 0.14 3.77 3.80 45.41 0.17 3.94 16 3 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 4 C -0.13 -3.60 6.11 31.99 0.20 -3.41 16 5 C 0.16 5.46 3.59 46.18 0.17 5.63 16 6 H 0.08 2.44 8.12 -2.39 -0.02 2.42 16 7 N -0.72 -31.58 5.17 -317.33 -1.64 -33.22 16 8 C -0.24 -11.54 9.98 84.03 0.84 -10.70 16 9 H 0.09 3.87 7.83 -2.91 -0.02 3.85 16 10 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 11 N -0.97 -54.97 13.06 21.65 0.28 -54.69 16 12 Si 0.97 41.96 29.55 68.60 2.03 43.99 16 13 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 14 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 15 H -0.30 -12.97 7.11 99.48 0.71 -12.26 16 16 C 0.07 2.23 4.62 86.73 0.40 2.63 16 17 N -0.60 -18.53 3.25 -805.41 -2.62 -21.15 16 18 C 0.57 19.22 7.65 86.79 0.66 19.89 16 19 O -0.57 -22.51 13.98 -3.85 -0.05 -22.56 16 20 C -0.15 -4.58 5.87 -20.12 -0.12 -4.70 16 21 C -0.10 -2.41 8.61 22.58 0.19 -2.21 16 22 C -0.13 -2.22 10.02 22.20 0.22 -1.99 16 23 C -0.04 -0.62 9.54 22.58 0.22 -0.41 16 24 C -0.16 -3.61 5.87 -20.12 -0.12 -3.73 16 25 C 0.56 12.58 8.05 86.79 0.70 13.28 16 26 N -0.82 -8.65 8.82 -175.59 -1.55 -10.20 16 27 O -0.59 -19.18 17.18 -3.88 -0.07 -19.25 16 28 C -0.02 -0.66 9.13 22.79 0.21 -0.45 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 2.06 6.11 -2.39 -0.01 2.04 16 31 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.07 2.09 7.92 -2.39 -0.02 2.07 16 33 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.38 18.18 7.71 -92.71 -0.72 17.47 16 35 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 36 H 0.09 2.31 6.74 -2.39 -0.02 2.30 16 37 H 0.07 2.40 6.61 -2.39 -0.02 2.39 16 38 H 0.17 4.33 2.72 -8.59 -0.02 4.31 16 39 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 40 H 0.18 0.75 6.39 -2.91 -0.02 0.73 16 41 H 0.42 1.25 6.85 -92.71 -0.64 0.61 16 42 H 0.42 3.31 8.93 -92.71 -0.83 2.48 16 43 H 0.12 4.11 7.25 -2.91 -0.02 4.09 16 Total: -1.00 -73.21 351.31 0.10 -73.11 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -1.10 Total: 32.96 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 4.82 Total: 11.00 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -5.53 Total: -119.25 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -0.12 Total: -41.81 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -73.21 0.10 -73.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989050412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.896 kcal (2) G-P(sol) polarization free energy of solvation -73.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds