Wall clock time and date at job start Tue Mar 31 2020 12:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 110.32621 * 2 1 4 4 C 1.54914 * 110.36542 * 122.23829 * 2 1 3 5 5 C 1.55154 * 101.58330 * 155.95901 * 4 2 1 6 6 H 1.09003 * 110.72255 * 83.03609 * 5 4 2 7 7 N 1.46495 * 110.71963 * 206.13463 * 5 4 2 8 8 C 1.36945 * 120.00060 * 204.99451 * 7 5 4 9 9 H 1.08003 * 119.99636 * 0.02562 * 8 7 5 10 10 C 1.38810 * 119.99790 * 180.27254 * 8 7 5 11 11 N 1.31618 * 120.00378 * 359.73284 * 10 8 7 12 12 Si 1.86802 * 119.99611 * 179.72617 * 10 8 7 13 13 H 1.48505 * 109.47298 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46753 * 120.00258 * 12 10 8 15 15 H 1.48496 * 109.47489 * 240.00164 * 12 10 8 16 16 C 1.54329 * 102.94006 * 324.49422 * 5 4 2 17 17 N 1.47018 * 107.27155 * 22.19749 * 16 5 4 18 18 C 1.34778 * 125.65007 * 181.02301 * 17 16 5 19 19 O 1.21360 * 120.00044 * 180.02562 * 18 17 16 20 20 C 1.49346 * 119.99894 * 0.03823 * 18 17 16 21 21 O 1.21380 * 119.99954 * 359.97438 * 20 18 17 22 22 N 1.34778 * 119.99894 * 179.97438 * 20 18 17 23 23 C 1.39728 * 119.99579 * 175.38264 * 22 20 18 24 24 C 1.38933 * 120.07083 * 214.81904 * 23 22 20 25 25 C 1.38105 * 119.92238 * 179.74580 * 24 23 22 26 26 C 1.38294 * 120.07101 * 0.55953 * 25 24 23 27 27 C 1.38288 * 120.15665 * 359.69258 * 26 25 24 28 28 C 1.38103 * 120.07506 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47440 * 297.76351 * 1 2 3 30 30 H 1.08998 * 109.46956 * 57.76077 * 1 2 3 31 31 H 1.09002 * 109.47568 * 177.76494 * 1 2 3 32 32 H 1.09000 * 111.00253 * 37.87903 * 4 2 1 33 33 H 1.09006 * 111.00411 * 274.03270 * 4 2 1 34 34 H 0.97001 * 120.00604 * 25.00251 * 7 5 4 35 35 H 0.97002 * 119.99813 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.87979 * 141.60759 * 16 5 4 37 37 H 1.08998 * 109.88623 * 262.77763 * 16 5 4 38 38 H 0.96996 * 120.00607 * 355.38317 * 22 20 18 39 39 H 1.07999 * 120.04361 * 0.02851 * 24 23 22 40 40 H 1.07989 * 119.96275 * 180.25466 * 25 24 23 41 41 H 1.08004 * 119.91981 * 179.72106 * 26 25 24 42 42 H 1.07996 * 119.96384 * 180.02562 * 27 26 25 43 43 H 1.07998 * 120.03916 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9085 1.0221 0.0000 4 6 2.0690 -0.7747 1.2284 5 6 3.4788 -1.1966 0.7365 6 1 4.1948 -0.3870 0.8778 7 7 3.9271 -2.4088 1.4262 8 6 5.2655 -2.6703 1.5511 9 1 5.9906 -1.9825 1.1414 10 6 5.6902 -3.8217 2.1996 11 7 4.8066 -4.6596 2.6992 12 14 7.5158 -4.1822 2.3632 13 1 8.2949 -3.0923 1.7225 14 1 7.8763 -4.2685 3.8012 15 1 7.8274 -5.4719 1.6965 16 6 3.2522 -1.4746 -0.7645 17 7 2.0453 -0.7381 -1.1675 18 6 1.5006 -0.7373 -2.4003 19 8 0.4985 -0.0891 -2.6205 20 6 2.1301 -1.5342 -3.4953 21 8 3.1325 -2.1823 -3.2752 22 7 1.5851 -1.5338 -4.7280 23 6 2.2262 -2.2003 -5.7755 24 6 2.1693 -1.6873 -7.0654 25 6 2.8085 -2.3457 -8.0974 26 6 3.4948 -3.5206 -7.8501 27 6 3.5490 -4.0368 -6.5683 28 6 2.9170 -3.3804 -5.5306 29 1 -0.3634 0.4787 0.9093 30 1 -0.3633 0.5482 -0.8692 31 1 -0.3634 -1.0269 -0.0401 32 1 1.4520 -1.6477 1.4413 33 1 2.1379 -0.1248 2.1008 34 1 3.2760 -3.0264 1.7944 35 1 5.1034 -5.4641 3.1527 36 1 4.1093 -1.1246 -1.3398 37 1 3.1059 -2.5426 -0.9258 38 1 0.7479 -1.0708 -4.8881 39 1 1.6298 -0.7722 -7.2600 40 1 2.7682 -1.9453 -9.0996 41 1 3.9900 -4.0359 -8.6599 42 1 4.0862 -4.9543 -6.3786 43 1 2.9601 -3.7839 -4.5297 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989094058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:07 Heat of formation + Delta-G solvation = -12.423022 kcal Electronic energy + Delta-G solvation = -26290.306656 eV Core-core repulsion = 22529.307890 eV Total energy + Delta-G solvation = -3760.998766 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.11244 -39.74066 -38.31200 -37.48141 -35.05470 -34.18687 -31.71890 -31.41491 -31.05957 -29.86504 -28.49539 -25.73028 -25.06536 -23.80343 -23.05022 -22.38736 -21.00659 -20.36214 -19.54978 -17.98620 -17.37314 -17.22211 -16.76842 -16.27241 -16.08107 -15.45959 -14.98584 -14.63516 -14.37631 -14.17178 -13.75423 -13.69703 -13.56636 -13.40903 -13.25725 -12.89112 -12.71235 -12.24833 -12.05949 -11.96580 -11.87389 -11.49966 -11.33854 -11.26906 -10.92544 -10.74067 -10.67372 -10.47677 -10.30384 -10.03719 -9.75990 -9.43528 -9.08555 -8.95844 -8.54841 -8.33312 -7.09420 -5.84432 -3.15236 0.94974 1.24838 1.59765 2.25974 3.19773 3.40538 3.45368 3.47948 3.49108 3.67668 4.29261 4.54317 4.73029 4.79179 4.94168 5.00423 5.05957 5.13819 5.24396 5.34927 5.38807 5.41976 5.55608 5.66817 5.75578 5.82936 5.85431 6.03617 6.09293 6.10832 6.14861 6.22515 6.30233 6.30821 6.38679 6.40926 6.52447 6.57332 6.82613 6.86730 6.98802 7.46866 7.64766 7.67035 8.01359 8.32768 9.45064 9.97669 10.32496 11.37605 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010767 B = 0.003833 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.836233 B = 7304.026976 C = 9574.736202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 H 0.080 0.920 4 C -0.138 4.138 5 C 0.169 3.831 6 H 0.070 0.930 7 N -0.711 5.711 8 C -0.247 4.247 9 H 0.074 0.926 10 C -0.008 4.008 11 N -0.929 5.929 12 Si 0.908 3.092 13 H -0.279 1.279 14 H -0.291 1.291 15 H -0.291 1.291 16 C 0.077 3.923 17 N -0.573 5.573 18 C 0.520 3.480 19 O -0.535 6.535 20 C 0.505 3.495 21 O -0.480 6.480 22 N -0.651 5.651 23 C 0.143 3.857 24 C -0.143 4.143 25 C -0.104 4.104 26 C -0.136 4.136 27 C -0.100 4.100 28 C -0.119 4.119 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.421 0.579 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.468 7.523 -17.011 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.032 3.968 3 H 0.098 0.902 4 C -0.177 4.177 5 C 0.057 3.943 6 H 0.088 0.912 7 N -0.350 5.350 8 C -0.378 4.378 9 H 0.092 0.908 10 C -0.205 4.205 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.204 1.204 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.048 4.048 17 N -0.306 5.306 18 C 0.302 3.698 19 O -0.414 6.414 20 C 0.287 3.713 21 O -0.352 6.352 22 N -0.299 5.299 23 C 0.049 3.951 24 C -0.164 4.164 25 C -0.123 4.123 26 C -0.154 4.154 27 C -0.119 4.119 28 C -0.139 4.139 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.221 0.779 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.258 0.742 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.074 7.401 -16.903 20.142 hybrid contribution 0.478 -0.342 0.043 0.590 sum -7.596 7.059 -16.860 19.794 Atomic orbital electron populations 1.22144 0.93916 1.02849 1.03039 1.22059 0.95041 0.95564 0.84155 0.90183 1.23213 0.98111 1.00409 0.95971 1.21261 0.93092 0.91313 0.88668 0.91245 1.42371 1.05333 1.22284 1.65029 1.19313 0.83271 1.04509 1.30742 0.90838 1.24764 0.97751 0.97226 1.00729 1.69670 1.32222 1.13299 1.42505 0.86110 0.84800 0.77909 0.77305 1.20417 1.21800 1.21755 1.23593 0.84500 0.97287 0.99438 1.48529 1.28274 1.46114 1.07678 1.19415 0.84563 0.82942 0.82850 1.90685 1.24911 1.43898 1.81857 1.20424 0.84717 0.82572 0.83629 1.90846 1.23559 1.39591 1.81190 1.43126 1.26245 1.53084 1.07425 1.17773 0.97644 0.92400 0.87233 1.20923 1.03076 1.00702 0.91675 1.20925 0.97292 0.95486 0.98569 1.21177 1.00405 0.96824 0.97021 1.21121 0.98557 0.99862 0.92356 1.21411 0.98270 0.93249 1.00968 0.91826 0.90098 0.92577 0.90330 0.89768 0.77856 0.93404 0.91287 0.89827 0.74181 0.85606 0.85683 0.85971 0.85494 0.84050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.60 37.15 0.32 -1.76 16 2 C 0.13 1.89 3.76 -66.42 -0.25 1.64 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.14 -2.11 6.13 -24.58 -0.15 -2.26 16 5 C 0.17 3.18 3.61 -66.10 -0.24 2.94 16 6 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 7 N -0.71 -17.00 5.15 -51.65 -0.27 -17.27 16 8 C -0.25 -6.64 9.96 -15.06 -0.15 -6.79 16 9 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 10 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 11 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 12 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 C 0.08 1.40 5.24 -3.06 -0.02 1.39 16 17 N -0.57 -9.12 3.24 -163.59 -0.53 -9.65 16 18 C 0.52 8.11 7.69 -11.63 -0.09 8.02 16 19 O -0.53 -8.41 14.21 5.49 0.08 -8.33 16 20 C 0.50 7.66 7.70 -11.63 -0.09 7.57 16 21 O -0.48 -8.51 11.55 5.47 0.06 -8.45 16 22 N -0.65 -8.00 5.32 -10.30 -0.05 -8.05 16 23 C 0.14 1.76 6.30 -83.75 -0.53 1.23 16 24 C -0.14 -1.42 9.97 -39.37 -0.39 -1.81 16 25 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16 26 C -0.14 -1.27 10.04 -39.54 -0.40 -1.67 16 27 C -0.10 -1.11 10.04 -39.61 -0.40 -1.51 16 28 C -0.12 -1.57 8.70 -39.38 -0.34 -1.92 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.11 6.10 -51.93 -0.32 0.80 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.39 9.87 7.76 -40.82 -0.32 9.55 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 1.29 7.69 -51.93 -0.40 0.89 16 37 H 0.08 1.74 7.47 -51.93 -0.39 1.35 16 38 H 0.42 4.25 8.30 -40.82 -0.34 3.91 16 39 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 42 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.14 2.13 6.22 -52.49 -0.33 1.81 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -30.93 357.16 -8.69 -39.62 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -5.85 Total: 13.02 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -3.22 Total: 3.41 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.13 Total: -61.65 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.14 Total: -16.78 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.93 -8.69 -39.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989094058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.194 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds