Wall clock time and date at job start Tue Mar 31 2020 12:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 110.32621 * 2 1 4 4 C 1.54914 * 110.36542 * 122.23829 * 2 1 3 5 5 C 1.55154 * 101.58330 * 155.95901 * 4 2 1 6 6 H 1.09003 * 110.72255 * 83.03609 * 5 4 2 7 7 N 1.46495 * 110.71963 * 206.13463 * 5 4 2 8 8 C 1.36945 * 120.00060 * 204.99451 * 7 5 4 9 9 H 1.08003 * 119.99636 * 0.02562 * 8 7 5 10 10 C 1.38810 * 119.99790 * 180.27254 * 8 7 5 11 11 N 1.31618 * 120.00378 * 359.73284 * 10 8 7 12 12 Si 1.86802 * 119.99611 * 179.72617 * 10 8 7 13 13 H 1.48505 * 109.47298 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46753 * 120.00258 * 12 10 8 15 15 H 1.48496 * 109.47489 * 240.00164 * 12 10 8 16 16 C 1.54329 * 102.94006 * 324.49422 * 5 4 2 17 17 N 1.47018 * 107.27155 * 22.19749 * 16 5 4 18 18 C 1.34778 * 125.65007 * 181.02301 * 17 16 5 19 19 O 1.21360 * 120.00044 * 180.02562 * 18 17 16 20 20 C 1.49346 * 119.99894 * 0.03823 * 18 17 16 21 21 O 1.21380 * 119.99954 * 359.97438 * 20 18 17 22 22 N 1.34778 * 119.99894 * 179.97438 * 20 18 17 23 23 C 1.39728 * 119.99579 * 175.38264 * 22 20 18 24 24 C 1.38933 * 120.07083 * 214.81904 * 23 22 20 25 25 C 1.38105 * 119.92238 * 179.74580 * 24 23 22 26 26 C 1.38294 * 120.07101 * 0.55953 * 25 24 23 27 27 C 1.38288 * 120.15665 * 359.69258 * 26 25 24 28 28 C 1.38103 * 120.07506 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47440 * 297.76351 * 1 2 3 30 30 H 1.08998 * 109.46956 * 57.76077 * 1 2 3 31 31 H 1.09002 * 109.47568 * 177.76494 * 1 2 3 32 32 H 1.09000 * 111.00253 * 37.87903 * 4 2 1 33 33 H 1.09006 * 111.00411 * 274.03270 * 4 2 1 34 34 H 0.97001 * 120.00604 * 25.00251 * 7 5 4 35 35 H 0.97002 * 119.99813 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.87979 * 141.60759 * 16 5 4 37 37 H 1.08998 * 109.88623 * 262.77763 * 16 5 4 38 38 H 0.96996 * 120.00607 * 355.38317 * 22 20 18 39 39 H 1.07999 * 120.04361 * 0.02851 * 24 23 22 40 40 H 1.07989 * 119.96275 * 180.25466 * 25 24 23 41 41 H 1.08004 * 119.91981 * 179.72106 * 26 25 24 42 42 H 1.07996 * 119.96384 * 180.02562 * 27 26 25 43 43 H 1.07998 * 120.03916 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9085 1.0221 0.0000 4 6 2.0690 -0.7747 1.2284 5 6 3.4788 -1.1966 0.7365 6 1 4.1948 -0.3870 0.8778 7 7 3.9271 -2.4088 1.4262 8 6 5.2655 -2.6703 1.5511 9 1 5.9906 -1.9825 1.1414 10 6 5.6902 -3.8217 2.1996 11 7 4.8066 -4.6596 2.6992 12 14 7.5158 -4.1822 2.3632 13 1 8.2949 -3.0923 1.7225 14 1 7.8763 -4.2685 3.8012 15 1 7.8274 -5.4719 1.6965 16 6 3.2522 -1.4746 -0.7645 17 7 2.0453 -0.7381 -1.1675 18 6 1.5006 -0.7373 -2.4003 19 8 0.4985 -0.0891 -2.6205 20 6 2.1301 -1.5342 -3.4953 21 8 3.1325 -2.1823 -3.2752 22 7 1.5851 -1.5338 -4.7280 23 6 2.2262 -2.2003 -5.7755 24 6 2.1693 -1.6873 -7.0654 25 6 2.8085 -2.3457 -8.0974 26 6 3.4948 -3.5206 -7.8501 27 6 3.5490 -4.0368 -6.5683 28 6 2.9170 -3.3804 -5.5306 29 1 -0.3634 0.4787 0.9093 30 1 -0.3633 0.5482 -0.8692 31 1 -0.3634 -1.0269 -0.0401 32 1 1.4520 -1.6477 1.4413 33 1 2.1379 -0.1248 2.1008 34 1 3.2760 -3.0264 1.7944 35 1 5.1034 -5.4641 3.1527 36 1 4.1093 -1.1246 -1.3398 37 1 3.1059 -2.5426 -0.9258 38 1 0.7479 -1.0708 -4.8881 39 1 1.6298 -0.7722 -7.2600 40 1 2.7682 -1.9453 -9.0996 41 1 3.9900 -4.0359 -8.6599 42 1 4.0862 -4.9543 -6.3786 43 1 2.9601 -3.7839 -4.5297 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989094058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:06 Heat of formation + Delta-G solvation = -32.562310 kcal Electronic energy + Delta-G solvation = -26291.179961 eV Core-core repulsion = 22529.307890 eV Total energy + Delta-G solvation = -3761.872071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.28431 -40.86256 -39.36295 -38.82518 -36.27043 -35.81126 -33.33499 -32.85992 -31.87684 -30.77855 -30.17355 -26.99689 -26.35808 -25.63264 -23.97229 -23.40110 -22.14511 -21.84491 -20.71612 -19.32769 -18.98384 -18.43001 -17.96474 -17.45135 -17.14926 -16.75717 -16.47430 -15.90262 -15.62071 -15.44670 -15.10225 -15.04167 -14.76980 -14.65790 -14.33804 -14.27908 -13.81389 -13.60842 -13.38309 -13.19455 -12.99476 -12.88663 -12.86001 -12.42954 -12.34886 -12.24109 -12.09798 -11.97690 -11.75451 -11.53641 -11.44690 -11.06691 -10.54909 -9.90645 -9.86384 -9.25573 -9.08570 -7.96542 -5.26499 -0.07798 0.42534 0.54197 1.12488 1.47852 1.49070 1.58458 1.98468 2.27852 2.56034 2.83458 3.10734 3.34636 3.66485 3.79425 3.84768 3.96122 4.03213 4.16837 4.26315 4.28161 4.41568 4.47382 4.47582 4.50539 4.55493 4.71139 4.77338 4.87864 5.05924 5.07744 5.11499 5.16506 5.25384 5.26749 5.30045 5.44146 5.49231 5.52759 5.58867 5.92162 6.03398 6.16063 6.25273 6.54791 6.80661 7.32129 8.02940 8.26626 9.26576 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010767 B = 0.003833 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.836233 B = 7304.026976 C = 9574.736202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 H 0.102 0.898 4 C -0.125 4.125 5 C 0.162 3.838 6 H 0.077 0.923 7 N -0.723 5.723 8 C -0.243 4.243 9 H 0.079 0.921 10 C -0.070 4.070 11 N -0.967 5.967 12 Si 0.969 3.031 13 H -0.265 1.265 14 H -0.291 1.291 15 H -0.297 1.297 16 C 0.098 3.902 17 N -0.577 5.577 18 C 0.522 3.478 19 O -0.532 6.532 20 C 0.501 3.499 21 O -0.515 6.515 22 N -0.634 5.634 23 C 0.118 3.882 24 C -0.138 4.138 25 C -0.100 4.100 26 C -0.130 4.130 27 C -0.114 4.114 28 C -0.146 4.146 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.431 0.569 39 H 0.152 0.848 40 H 0.161 0.839 41 H 0.151 0.849 42 H 0.134 0.866 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.775 9.544 -19.054 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.120 0.880 4 C -0.164 4.164 5 C 0.052 3.948 6 H 0.095 0.905 7 N -0.361 5.361 8 C -0.375 4.375 9 H 0.097 0.903 10 C -0.263 4.263 11 N -0.617 5.617 12 Si 0.799 3.201 13 H -0.190 1.190 14 H -0.218 1.218 15 H -0.225 1.225 16 C -0.028 4.028 17 N -0.310 5.310 18 C 0.304 3.696 19 O -0.411 6.411 20 C 0.283 3.717 21 O -0.389 6.389 22 N -0.282 5.282 23 C 0.025 3.975 24 C -0.158 4.158 25 C -0.118 4.118 26 C -0.149 4.149 27 C -0.132 4.132 28 C -0.166 4.166 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.208 0.792 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.271 0.729 39 H 0.170 0.830 40 H 0.179 0.821 41 H 0.169 0.831 42 H 0.152 0.848 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.423 9.489 -19.003 22.849 hybrid contribution 0.506 -0.925 0.514 1.173 sum -7.917 8.564 -18.489 21.860 Atomic orbital electron populations 1.22076 0.92641 1.02236 1.04132 1.22250 0.95989 0.95978 0.82514 0.88035 1.23123 0.95279 1.00590 0.97388 1.21471 0.95360 0.89530 0.88473 0.90511 1.42501 1.04260 1.23709 1.65661 1.19682 0.84717 1.04088 1.29009 0.90310 1.25525 1.01576 0.97587 1.01595 1.69813 1.33900 1.13806 1.44175 0.85135 0.80487 0.77534 0.76980 1.18970 1.21829 1.22450 1.23048 0.85290 0.95615 0.98855 1.48516 1.27709 1.46255 1.08493 1.19478 0.84439 0.82807 0.82831 1.90682 1.24671 1.43839 1.81862 1.20448 0.84472 0.82360 0.84422 1.90843 1.25169 1.41120 1.81789 1.43003 1.26273 1.52282 1.06622 1.17994 0.98720 0.92646 0.88130 1.21254 1.02640 1.01400 0.90505 1.21395 0.95729 0.94803 0.99853 1.21555 0.99659 0.96938 0.96725 1.21307 0.98698 1.00322 0.92907 1.21325 1.00343 0.94682 1.00298 0.89151 0.90681 0.93853 0.91324 0.87488 0.79163 0.93991 0.92172 0.93067 0.72936 0.83030 0.82128 0.83105 0.84816 0.87197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 8.60 71.98 0.62 -3.01 16 2 C 0.13 3.54 3.76 45.47 0.17 3.71 16 3 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 4 C -0.13 -3.67 6.13 31.99 0.20 -3.48 16 5 C 0.16 6.09 3.61 46.18 0.17 6.26 16 6 H 0.08 2.79 8.09 -2.39 -0.02 2.77 16 7 N -0.72 -35.30 5.15 -317.32 -1.63 -36.93 16 8 C -0.24 -13.21 9.96 84.03 0.84 -12.38 16 9 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 10 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 11 N -0.97 -58.58 13.06 21.65 0.28 -58.29 16 12 Si 0.97 45.95 29.55 68.60 2.03 47.97 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 15 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 16 C 0.10 3.66 5.24 86.73 0.45 4.12 16 17 N -0.58 -18.26 3.24 -789.84 -2.56 -20.82 16 18 C 0.52 16.21 7.69 87.24 0.67 16.88 16 19 O -0.53 -16.12 14.21 -3.28 -0.05 -16.16 16 20 C 0.50 15.65 7.70 87.24 0.67 16.32 16 21 O -0.51 -19.39 11.55 -3.34 -0.04 -19.43 16 22 N -0.63 -15.57 5.32 -304.84 -1.62 -17.19 16 23 C 0.12 2.87 6.30 38.21 0.24 3.11 16 24 C -0.14 -2.40 9.97 22.40 0.22 -2.18 16 25 C -0.10 -1.44 10.04 22.25 0.22 -1.22 16 26 C -0.13 -2.13 10.04 22.29 0.22 -1.91 16 27 C -0.11 -2.51 10.04 22.25 0.22 -2.29 16 28 C -0.15 -4.05 8.70 22.40 0.19 -3.86 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.90 6.10 -2.39 -0.01 1.89 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 2.18 7.93 -2.39 -0.02 2.16 16 33 H 0.11 2.68 8.14 -2.38 -0.02 2.66 16 34 H 0.38 19.82 7.76 -92.71 -0.72 19.10 16 35 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.06 2.33 7.69 -2.39 -0.02 2.31 16 37 H 0.05 2.26 7.47 -2.39 -0.02 2.24 16 38 H 0.43 8.34 8.30 -92.71 -0.77 7.57 16 39 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.16 1.21 8.06 -2.92 -0.02 1.19 16 41 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 42 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 43 H 0.11 3.69 6.22 -2.91 -0.02 3.67 16 Total: -1.00 -68.90 357.16 1.55 -67.35 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: -0.44 Total: 36.95 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 5.58 Total: 16.56 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -5.53 Total: -133.24 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.09 Total: -35.59 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -68.90 1.55 -67.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989094058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.784 kcal (2) G-P(sol) polarization free energy of solvation -68.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds