Wall clock time and date at job start Tue Mar 31 2020 12:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50692 * 119.99906 * 2 1 4 4 O 1.42903 * 109.47053 * 135.00645 * 3 2 1 5 5 C 1.35645 * 116.99871 * 180.02562 * 4 3 2 6 6 C 1.39344 * 120.54380 * 359.97438 * 5 4 3 7 7 C 1.38298 * 118.44319 * 180.02562 * 6 5 4 8 8 C 1.38772 * 119.44246 * 359.97438 * 7 6 5 9 9 N 1.31371 * 121.06926 * 359.74247 * 8 7 6 10 10 C 1.32862 * 121.69112 * 0.52788 * 9 8 7 11 11 C 1.47831 * 119.77913 * 179.75109 * 10 9 8 12 12 O 1.21560 * 119.99892 * 179.72520 * 11 10 9 13 13 N 1.34776 * 120.00392 * 359.72566 * 11 10 9 14 14 C 1.47422 * 125.64527 * 0.02759 * 13 11 10 15 15 C 1.54917 * 104.83074 * 204.09182 * 14 13 11 16 16 C 1.55158 * 101.57978 * 322.98980 * 15 14 13 17 17 H 1.09003 * 110.71814 * 277.13679 * 16 15 14 18 18 N 1.46500 * 110.71650 * 153.86610 * 16 15 14 19 19 C 1.36941 * 119.99671 * 154.99950 * 18 16 15 20 20 H 1.08001 * 120.00333 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99811 * 179.97438 * 19 18 16 22 22 N 1.31616 * 120.00146 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99793 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47297 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46857 * 120.00147 * 23 21 19 26 26 H 1.48496 * 109.46980 * 240.00307 * 23 21 19 27 27 C 1.47020 * 125.65281 * 179.97438 * 13 11 10 28 28 H 1.07995 * 120.00422 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99847 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99992 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47253 * 15.00781 * 3 2 1 32 32 H 1.09006 * 109.47237 * 255.00873 * 3 2 1 33 33 H 1.08002 * 120.77936 * 359.97438 * 6 5 4 34 34 H 1.08001 * 120.28398 * 179.97438 * 7 6 5 35 35 H 1.08007 * 119.46218 * 180.02562 * 8 7 6 36 36 H 1.08998 * 110.36873 * 85.25268 * 14 13 11 37 37 H 1.09005 * 110.36491 * 322.92676 * 14 13 11 38 38 H 1.08998 * 111.00524 * 81.06438 * 15 14 13 39 39 H 1.08996 * 111.00376 * 204.87436 * 15 14 13 40 40 H 0.97001 * 120.00302 * 334.99871 * 18 16 15 41 41 H 0.96997 * 119.99991 * 179.97438 * 22 21 19 42 42 H 1.09000 * 109.88493 * 59.55540 * 27 13 11 43 43 H 1.09003 * 109.87996 * 298.39630 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9077 2.3431 1.0786 6 6 3.6655 3.4752 0.3030 7 6 4.4888 4.5742 0.4666 8 6 5.5233 4.5201 1.3901 9 7 5.7297 3.4439 2.1146 10 6 4.9690 2.3619 1.9897 11 6 5.2425 1.1718 2.8229 12 8 4.5459 0.1814 2.7154 13 7 6.2642 1.1848 3.7018 14 6 7.1836 2.3137 3.9338 15 6 8.4693 1.6667 4.5068 16 6 7.8812 0.5357 5.3913 17 1 7.5853 0.9230 6.3663 18 7 8.8419 -0.5607 5.5372 19 6 8.7784 -1.3859 6.6282 20 1 8.0204 -1.2283 7.3812 21 6 9.6884 -2.4251 6.7662 22 7 10.6125 -2.6168 5.8489 23 14 9.6023 -3.5504 8.2548 24 1 8.4820 -3.1257 9.1322 25 1 9.3767 -4.9479 7.8063 26 1 10.8792 -3.4723 9.0088 27 6 6.6459 0.0761 4.5887 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3855 2.1160 0.2661 32 1 2.4754 1.4868 -0.9927 33 1 2.8543 3.4936 -0.4098 34 1 4.3282 5.4671 -0.1194 35 1 6.1663 5.3784 1.5184 36 1 6.7553 3.0097 4.6550 37 1 7.4015 2.8243 2.9957 38 1 9.0891 1.2568 3.7094 39 1 9.0317 2.3812 5.1078 40 1 9.5230 -0.7020 4.8611 41 1 11.2486 -3.3427 5.9456 42 1 6.8954 -0.8039 3.9958 43 1 5.8259 -0.1533 5.2692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019630993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:07 Heat of formation + Delta-G solvation = 20.951515 kcal Electronic energy + Delta-G solvation = -25985.379308 eV Core-core repulsion = 22225.827770 eV Total energy + Delta-G solvation = -3759.551538 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.12188 -39.23943 -38.48864 -37.01970 -34.46480 -34.02272 -32.70456 -31.34992 -30.71865 -29.40162 -27.56097 -27.00596 -25.06017 -23.62172 -23.08184 -22.27612 -20.58288 -20.09996 -19.48095 -18.36442 -17.53590 -17.30180 -16.83831 -16.43615 -15.89693 -15.53029 -15.17644 -14.98429 -14.53012 -14.33780 -14.14630 -13.58557 -13.34726 -13.31364 -13.19161 -13.08501 -12.56478 -12.38132 -12.17838 -11.86744 -11.71206 -11.45645 -11.35551 -11.05387 -10.77597 -10.69455 -10.31006 -10.12113 -10.07066 -9.88603 -9.81623 -9.65016 -9.37782 -8.92902 -8.71278 -8.07931 -7.00792 -5.77390 -3.07478 0.48886 0.95012 1.71163 2.88588 2.95534 3.26333 3.45418 3.51324 3.53354 3.78635 4.09387 4.24735 4.36282 4.49649 4.60429 4.65478 4.68284 4.78410 4.92219 5.05713 5.12092 5.23332 5.40201 5.48279 5.55099 5.58643 5.64912 5.76829 5.86736 5.96749 6.07715 6.20587 6.24451 6.25324 6.32146 6.46234 6.56159 6.69311 6.83785 6.97727 6.99777 7.54380 7.72076 7.94617 8.40264 8.52463 9.52241 10.07032 10.41998 11.44912 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.002969 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.674118 B = 9427.035168 C =10870.912699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.149 4.149 3 C 0.078 3.922 4 O -0.265 6.265 5 C 0.137 3.863 6 C -0.178 4.178 7 C -0.111 4.111 8 C 0.053 3.947 9 N -0.413 5.413 10 C 0.056 3.944 11 C 0.574 3.426 12 O -0.522 6.522 13 N -0.594 5.594 14 C 0.107 3.893 15 C -0.146 4.146 16 C 0.171 3.829 17 H 0.067 0.933 18 N -0.713 5.713 19 C -0.245 4.245 20 H 0.073 0.927 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.083 3.917 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.165 0.835 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.387 0.613 41 H 0.255 0.745 42 H 0.072 0.928 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.406 17.477 -14.909 28.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C 0.003 3.997 4 O -0.175 6.175 5 C 0.086 3.914 6 C -0.205 4.205 7 C -0.131 4.131 8 C -0.107 4.107 9 N -0.124 5.124 10 C -0.083 4.083 11 C 0.360 3.640 12 O -0.398 6.398 13 N -0.327 5.327 14 C -0.016 4.016 15 C -0.185 4.185 16 C 0.059 3.941 17 H 0.085 0.915 18 N -0.352 5.352 19 C -0.376 4.376 20 H 0.091 0.909 21 C -0.207 4.207 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.042 4.042 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.142 0.858 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.182 0.818 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.221 0.779 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.183 16.552 -14.104 27.107 hybrid contribution -0.608 -0.446 -0.326 0.821 sum -16.791 16.106 -14.430 27.378 Atomic orbital electron populations 1.23851 0.95315 1.02499 0.99409 1.22648 0.95605 0.97862 1.00632 1.21980 0.88102 0.97390 0.92205 1.86479 1.40712 1.33323 1.56968 1.20005 0.90813 0.86914 0.93686 1.21726 1.03030 0.93471 1.02224 1.22177 0.94607 0.98472 0.97855 1.22809 0.97490 0.96522 0.93881 1.67988 1.23932 0.98812 1.21698 1.20823 0.93976 0.94907 0.98592 1.17268 0.80770 0.85980 0.79939 1.90835 1.48273 1.33015 1.67704 1.48342 1.29322 1.17378 1.37645 1.22571 0.88698 0.88555 1.01767 1.23163 0.96488 0.98769 1.00052 1.21220 0.88696 0.88554 0.95616 0.91462 1.42395 1.34294 1.32276 1.26285 1.19332 1.12088 1.07012 0.99150 0.90886 1.24770 0.98098 0.99285 0.98569 1.69673 1.19879 1.33379 1.34912 0.86103 0.77199 0.80686 0.82119 1.20447 1.21818 1.21840 1.23252 0.99112 0.89451 0.92387 0.88410 0.87313 0.85798 0.91436 0.90917 0.83844 0.84093 0.81767 0.91950 0.88489 0.90845 0.90258 0.77891 0.93471 0.90947 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 14.31 29.01 0.42 -0.85 16 2 C -0.15 -1.39 9.89 -36.03 -0.36 -1.75 16 3 C 0.08 0.72 5.17 36.00 0.19 0.90 16 4 O -0.26 -3.72 8.18 -40.58 -0.33 -4.05 16 5 C 0.14 1.79 6.71 -38.56 -0.26 1.53 16 6 C -0.18 -1.56 9.13 -39.15 -0.36 -1.92 16 7 C -0.11 -0.80 10.10 -39.36 -0.40 -1.20 16 8 C 0.05 0.47 11.17 -17.55 -0.20 0.28 16 9 N -0.41 -5.25 6.59 -9.71 -0.06 -5.31 16 10 C 0.06 0.85 6.73 -82.88 -0.56 0.29 16 11 C 0.57 10.82 7.83 -12.34 -0.10 10.73 16 12 O -0.52 -11.43 15.47 -16.64 -0.26 -11.69 16 13 N -0.59 -10.84 3.33 -171.64 -0.57 -11.41 16 14 C 0.11 1.62 5.93 -2.53 -0.01 1.61 16 15 C -0.15 -2.41 6.71 -24.58 -0.16 -2.57 16 16 C 0.17 3.48 3.61 -66.10 -0.24 3.24 16 17 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 18 N -0.71 -17.97 5.15 -51.65 -0.27 -18.24 16 19 C -0.24 -6.82 9.96 -15.06 -0.15 -6.97 16 20 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 23 Si 0.91 22.59 29.55 -169.99 -5.02 17.56 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C 0.08 1.70 6.62 -3.07 -0.02 1.68 16 28 H 0.10 0.56 7.90 -52.49 -0.41 0.15 16 29 H 0.11 0.68 8.06 -52.48 -0.42 0.26 16 30 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 31 H 0.07 0.48 7.42 -51.93 -0.39 0.10 16 32 H 0.07 0.52 7.70 -51.93 -0.40 0.12 16 33 H 0.14 0.82 6.46 -52.49 -0.34 0.48 16 34 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.37 5.89 -51.93 -0.31 1.06 16 38 H 0.07 1.27 8.01 -51.93 -0.42 0.85 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.39 10.35 7.76 -40.82 -0.32 10.03 16 41 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 42 H 0.07 1.67 8.03 -51.93 -0.42 1.26 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -34.78 362.08 -8.56 -43.33 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.92 Total: 7.28 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -2.30 Total: 4.58 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: -0.18 Total: -62.47 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.59 Total: -15.74 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.78 -8.56 -43.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019630993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.284 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds