Wall clock time and date at job start Tue Mar 31 2020 12:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50692 * 119.99906 * 2 1 4 4 O 1.42903 * 109.47053 * 135.00645 * 3 2 1 5 5 C 1.35645 * 116.99871 * 180.02562 * 4 3 2 6 6 C 1.39344 * 120.54380 * 359.97438 * 5 4 3 7 7 C 1.38298 * 118.44319 * 180.02562 * 6 5 4 8 8 C 1.38772 * 119.44246 * 359.97438 * 7 6 5 9 9 N 1.31371 * 121.06926 * 359.74247 * 8 7 6 10 10 C 1.32862 * 121.69112 * 0.52788 * 9 8 7 11 11 C 1.47831 * 119.77913 * 179.75109 * 10 9 8 12 12 O 1.21560 * 119.99892 * 179.72520 * 11 10 9 13 13 N 1.34776 * 120.00392 * 359.72566 * 11 10 9 14 14 C 1.47422 * 125.64527 * 0.02759 * 13 11 10 15 15 C 1.54917 * 104.83074 * 204.09182 * 14 13 11 16 16 C 1.55158 * 101.57978 * 322.98980 * 15 14 13 17 17 H 1.09003 * 110.71814 * 277.13679 * 16 15 14 18 18 N 1.46500 * 110.71650 * 153.86610 * 16 15 14 19 19 C 1.36941 * 119.99671 * 154.99950 * 18 16 15 20 20 H 1.08001 * 120.00333 * 359.97438 * 19 18 16 21 21 C 1.38813 * 119.99811 * 179.97438 * 19 18 16 22 22 N 1.31616 * 120.00146 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99793 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47297 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46857 * 120.00147 * 23 21 19 26 26 H 1.48496 * 109.46980 * 240.00307 * 23 21 19 27 27 C 1.47020 * 125.65281 * 179.97438 * 13 11 10 28 28 H 1.07995 * 120.00422 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99847 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99992 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47253 * 15.00781 * 3 2 1 32 32 H 1.09006 * 109.47237 * 255.00873 * 3 2 1 33 33 H 1.08002 * 120.77936 * 359.97438 * 6 5 4 34 34 H 1.08001 * 120.28398 * 179.97438 * 7 6 5 35 35 H 1.08007 * 119.46218 * 180.02562 * 8 7 6 36 36 H 1.08998 * 110.36873 * 85.25268 * 14 13 11 37 37 H 1.09005 * 110.36491 * 322.92676 * 14 13 11 38 38 H 1.08998 * 111.00524 * 81.06438 * 15 14 13 39 39 H 1.08996 * 111.00376 * 204.87436 * 15 14 13 40 40 H 0.97001 * 120.00302 * 334.99871 * 18 16 15 41 41 H 0.96997 * 119.99991 * 179.97438 * 22 21 19 42 42 H 1.09000 * 109.88493 * 59.55540 * 27 13 11 43 43 H 1.09003 * 109.87996 * 298.39630 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9077 2.3431 1.0786 6 6 3.6655 3.4752 0.3030 7 6 4.4888 4.5742 0.4666 8 6 5.5233 4.5201 1.3901 9 7 5.7297 3.4439 2.1146 10 6 4.9690 2.3619 1.9897 11 6 5.2425 1.1718 2.8229 12 8 4.5459 0.1814 2.7154 13 7 6.2642 1.1848 3.7018 14 6 7.1836 2.3137 3.9338 15 6 8.4693 1.6667 4.5068 16 6 7.8812 0.5357 5.3913 17 1 7.5853 0.9230 6.3663 18 7 8.8419 -0.5607 5.5372 19 6 8.7784 -1.3859 6.6282 20 1 8.0204 -1.2283 7.3812 21 6 9.6884 -2.4251 6.7662 22 7 10.6125 -2.6168 5.8489 23 14 9.6023 -3.5504 8.2548 24 1 8.4820 -3.1257 9.1322 25 1 9.3767 -4.9479 7.8063 26 1 10.8792 -3.4723 9.0088 27 6 6.6459 0.0761 4.5887 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8501 -0.9353 -0.0004 31 1 1.3855 2.1160 0.2661 32 1 2.4754 1.4868 -0.9927 33 1 2.8543 3.4936 -0.4098 34 1 4.3282 5.4671 -0.1194 35 1 6.1663 5.3784 1.5184 36 1 6.7553 3.0097 4.6550 37 1 7.4015 2.8243 2.9957 38 1 9.0891 1.2568 3.7094 39 1 9.0317 2.3812 5.1078 40 1 9.5230 -0.7020 4.8611 41 1 11.2486 -3.3427 5.9456 42 1 6.8954 -0.8039 3.9958 43 1 5.8259 -0.1533 5.2692 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019630993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:06 Heat of formation + Delta-G solvation = -2.084766 kcal Electronic energy + Delta-G solvation = -25986.378236 eV Core-core repulsion = 22225.827770 eV Total energy + Delta-G solvation = -3760.550466 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03153 -40.54247 -39.34461 -38.56224 -35.93396 -35.10225 -33.73760 -32.98467 -31.64901 -30.97996 -29.15910 -27.71194 -26.43453 -25.23829 -23.86229 -23.65685 -21.83018 -21.15114 -20.70409 -19.40256 -19.10356 -18.53347 -17.95414 -17.40514 -17.19505 -16.68699 -16.47501 -15.98693 -15.85596 -15.49889 -15.24185 -15.08012 -14.85412 -14.54652 -14.29048 -13.97366 -13.92473 -13.57921 -13.39344 -13.15724 -13.01097 -12.89906 -12.57575 -12.50319 -12.44477 -12.08814 -12.00591 -11.76501 -11.64395 -11.21297 -11.03325 -10.81368 -10.57115 -10.33521 -9.74579 -9.38833 -9.10383 -7.97472 -5.27951 -0.35685 0.23588 1.06528 1.46599 1.48211 1.58044 1.75210 1.92678 2.25639 2.54816 2.82310 3.13355 3.34636 3.55167 3.65144 3.74392 3.88207 3.94666 3.96458 4.05005 4.05786 4.15852 4.28100 4.35907 4.40276 4.46473 4.48345 4.58066 4.80837 4.88020 4.91359 5.01808 5.02948 5.08446 5.20040 5.31609 5.40279 5.49200 5.52119 5.57087 5.63572 6.22248 6.24065 6.52902 6.75661 7.14671 7.30537 8.01950 8.26588 9.25861 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.002969 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.674118 B = 9427.035168 C =10870.912699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.184 4.184 3 C 0.074 3.926 4 O -0.306 6.306 5 C 0.122 3.878 6 C -0.171 4.171 7 C -0.084 4.084 8 C 0.054 3.946 9 N -0.431 5.431 10 C 0.010 3.990 11 C 0.565 3.435 12 O -0.571 6.571 13 N -0.600 5.600 14 C 0.118 3.882 15 C -0.133 4.133 16 C 0.168 3.832 17 H 0.075 0.925 18 N -0.725 5.725 19 C -0.246 4.246 20 H 0.078 0.922 21 C -0.073 4.073 22 N -0.968 5.968 23 Si 0.974 3.026 24 H -0.266 1.266 25 H -0.296 1.296 26 H -0.289 1.289 27 C 0.094 3.906 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.178 0.822 34 H 0.192 0.808 35 H 0.203 0.797 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.376 0.624 41 H 0.252 0.748 42 H 0.034 0.966 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.861 21.500 -16.031 32.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.203 4.203 3 C 0.001 3.999 4 O -0.217 6.217 5 C 0.071 3.929 6 C -0.197 4.197 7 C -0.103 4.103 8 C -0.108 4.108 9 N -0.143 5.143 10 C -0.126 4.126 11 C 0.354 3.646 12 O -0.451 6.451 13 N -0.332 5.332 14 C -0.004 4.004 15 C -0.172 4.172 16 C 0.057 3.943 17 H 0.093 0.907 18 N -0.363 5.363 19 C -0.378 4.378 20 H 0.096 0.904 21 C -0.266 4.266 22 N -0.618 5.618 23 Si 0.803 3.197 24 H -0.190 1.190 25 H -0.224 1.224 26 H -0.216 1.216 27 C -0.032 4.032 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.196 0.804 34 H 0.209 0.791 35 H 0.220 0.780 36 H 0.099 0.901 37 H 0.132 0.868 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.208 0.792 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.669 20.613 -15.217 31.123 hybrid contribution -0.296 -1.537 -0.119 1.570 sum -17.966 19.076 -15.336 30.362 Atomic orbital electron populations 1.24099 0.94529 1.03964 0.96369 1.22670 0.96531 0.97516 1.03551 1.22237 0.87576 0.97806 0.92328 1.86432 1.42025 1.34726 1.58523 1.20237 0.90383 0.88075 0.94158 1.22160 1.03949 0.92068 1.01499 1.22768 0.92191 0.99175 0.96169 1.23581 0.98189 0.96032 0.92971 1.67802 1.24130 0.99185 1.23191 1.20208 0.96990 0.94683 1.00686 1.18057 0.79835 0.87013 0.79704 1.90780 1.49882 1.35276 1.69165 1.48427 1.30039 1.17324 1.37405 1.22687 0.87090 0.87582 1.03003 1.23106 0.97210 0.97640 0.99215 1.21398 0.87841 0.88399 0.96655 0.90726 1.42540 1.34987 1.33356 1.25436 1.19709 1.11462 1.07044 0.99564 0.90392 1.25593 0.98297 1.01136 1.01535 1.69824 1.20914 1.34143 1.36921 0.85069 0.77476 0.78183 0.79002 1.18983 1.22369 1.21576 1.22830 0.98830 0.89400 0.92130 0.86111 0.86581 0.88273 0.88968 0.89034 0.80438 0.79088 0.78031 0.90081 0.86792 0.91856 0.87676 0.79193 0.93919 0.94758 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 14.31 67.78 0.97 -1.09 16 2 C -0.18 -3.52 9.89 25.64 0.25 -3.27 16 3 C 0.07 1.30 5.17 71.23 0.37 1.67 16 4 O -0.31 -8.85 8.18 -68.60 -0.56 -9.41 16 5 C 0.12 3.11 6.71 22.93 0.15 3.26 16 6 C -0.17 -2.33 9.13 22.55 0.21 -2.12 16 7 C -0.08 -0.74 10.10 22.41 0.23 -0.51 16 8 C 0.05 0.72 11.17 84.89 0.95 1.67 16 9 N -0.43 -10.10 6.59 -184.62 -1.22 -11.31 16 10 C 0.01 0.30 6.73 41.93 0.28 0.59 16 11 C 0.56 22.54 7.83 86.78 0.68 23.22 16 12 O -0.57 -27.19 15.47 17.08 0.26 -26.93 16 13 N -0.60 -22.82 3.33 -815.21 -2.71 -25.53 16 14 C 0.12 3.48 5.93 86.86 0.52 4.00 16 15 C -0.13 -4.33 6.71 31.99 0.21 -4.11 16 16 C 0.17 6.96 3.61 46.18 0.17 7.13 16 17 H 0.07 3.00 8.09 -2.39 -0.02 2.98 16 18 N -0.72 -37.77 5.15 -317.33 -1.63 -39.41 16 19 C -0.25 -14.01 9.96 84.03 0.84 -13.17 16 20 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 21 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 22 N -0.97 -60.47 13.06 21.65 0.28 -60.18 16 23 Si 0.97 47.32 29.55 68.60 2.03 49.34 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 C 0.09 4.12 6.62 86.73 0.57 4.69 16 28 H 0.12 1.05 7.90 -2.91 -0.02 1.03 16 29 H 0.12 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.10 2.30 8.06 -2.91 -0.02 2.28 16 31 H 0.09 1.07 7.42 -2.39 -0.02 1.06 16 32 H 0.09 1.15 7.70 -2.38 -0.02 1.13 16 33 H 0.18 1.12 6.46 -2.91 -0.02 1.10 16 34 H 0.19 -0.14 8.06 -2.91 -0.02 -0.16 16 35 H 0.20 1.07 8.06 -2.91 -0.02 1.04 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.11 3.04 5.89 -2.38 -0.01 3.02 16 38 H 0.06 2.20 8.01 -2.39 -0.02 2.18 16 39 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.38 20.97 7.76 -92.71 -0.72 20.25 16 41 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.03 1.73 8.03 -2.39 -0.02 1.71 16 43 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -82.73 362.08 3.62 -79.11 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.31 Total: 26.21 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 6.86 Total: 18.12 kcal Atomic # 7 Polarization: -131.15 SS G_CDS: -5.28 Total: -136.43 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.30 Total: -36.34 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.34 kcal Total: -82.73 3.62 -79.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019630993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.022 kcal (2) G-P(sol) polarization free energy of solvation -82.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds