Wall clock time and date at job start Tue Mar 31 2020 12:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00164 * 2 1 4 4 O 1.42888 * 109.47346 * 134.99954 * 3 2 1 5 5 C 1.35644 * 117.00446 * 180.02562 * 4 3 2 6 6 C 1.39348 * 120.53775 * 359.72215 * 5 4 3 7 7 C 1.38300 * 118.44074 * 179.74067 * 6 5 4 8 8 C 1.38768 * 119.44526 * 0.55131 * 7 6 5 9 9 N 1.31378 * 121.06495 * 359.71194 * 8 7 6 10 10 C 1.32855 * 121.69740 * 359.97438 * 9 8 7 11 11 C 1.47823 * 119.78601 * 180.02562 * 10 9 8 12 12 O 1.21555 * 120.00805 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99979 * 0.02562 * 11 10 9 14 14 C 1.46498 * 120.00257 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.84956 * 25.33325 * 14 13 11 16 16 C 1.53785 * 113.61382 * 156.52671 * 14 13 11 17 17 C 1.53787 * 87.07778 * 139.98167 * 16 14 13 18 18 H 1.09000 * 113.60956 * 220.01671 * 17 16 14 19 19 N 1.46496 * 113.61235 * 89.20094 * 17 16 14 20 20 C 1.36941 * 119.99696 * 154.99815 * 19 17 16 21 21 H 1.08003 * 120.00223 * 0.02562 * 20 19 17 22 22 C 1.38817 * 120.00164 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99824 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00286 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46993 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47625 * 119.99818 * 24 22 20 27 27 H 1.48503 * 109.47223 * 239.99799 * 24 22 20 28 28 C 1.53777 * 113.61498 * 254.13620 * 14 13 11 29 29 H 1.07999 * 120.00108 * 179.72930 * 1 2 3 30 30 H 1.08000 * 119.99390 * 359.72719 * 1 2 3 31 31 H 1.08005 * 119.99846 * 180.27284 * 2 1 3 32 32 H 1.08999 * 109.46719 * 254.99715 * 3 2 1 33 33 H 1.08998 * 109.46973 * 14.99603 * 3 2 1 34 34 H 1.07999 * 120.77949 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.27888 * 180.26854 * 7 6 5 36 36 H 1.07999 * 119.46817 * 179.67593 * 8 7 6 37 37 H 0.97005 * 119.99846 * 359.97438 * 13 11 10 38 38 H 1.09007 * 113.61347 * 254.52633 * 16 14 13 39 39 H 1.08993 * 113.61714 * 25.35121 * 16 14 13 40 40 H 0.96998 * 120.00292 * 334.99402 * 19 17 16 41 41 H 0.96990 * 120.00188 * 179.97438 * 23 22 20 42 42 H 1.09003 * 113.61364 * 334.56416 * 28 14 13 43 43 H 1.08994 * 113.61655 * 105.46696 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9076 2.3432 1.0787 6 6 3.6687 3.4733 0.2992 7 6 4.4883 4.5746 0.4672 8 6 5.5232 4.5203 1.3901 9 7 5.7332 3.4420 2.1105 10 6 4.9693 2.3618 1.9894 11 6 5.2434 1.1714 2.8219 12 8 4.5472 0.1808 2.7140 13 7 6.2652 1.1844 3.7006 14 6 6.5372 0.0045 4.5253 15 1 6.1816 -0.9204 4.0712 16 6 7.9884 -0.0743 5.0282 17 6 7.4148 -0.5707 6.3659 18 1 7.9210 -0.1572 7.2382 19 7 7.2605 -2.0259 6.4344 20 6 7.2648 -2.6584 7.6489 21 1 7.3815 -2.0845 8.5564 22 6 7.1181 -4.0373 7.7139 23 7 6.9743 -4.7367 6.6082 24 14 7.1232 -4.9001 9.3706 25 1 7.2983 -3.8963 10.4509 26 1 5.8349 -5.6135 9.5613 27 1 8.2412 -5.8765 9.4168 28 6 6.1172 0.1703 5.9953 29 1 -0.5400 -0.9353 -0.0044 30 1 -0.5399 0.9354 0.0045 31 1 1.8500 -0.9354 -0.0045 32 1 2.4756 1.4867 -0.9926 33 1 1.3856 2.1161 0.2659 34 1 2.8602 3.4902 -0.4166 35 1 4.3271 5.4677 -0.1183 36 1 6.1667 5.3782 1.5178 37 1 6.8210 1.9748 3.7865 38 1 8.5909 -0.8192 4.5081 39 1 8.4805 0.8959 5.0957 40 1 7.1553 -2.5413 5.6195 41 1 6.8722 -5.7001 6.6535 42 1 6.0963 1.2077 6.3291 43 1 5.2113 -0.3773 6.2550 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020907149.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:34 Heat of formation + Delta-G solvation = 26.268552 kcal Electronic energy + Delta-G solvation = -25534.320914 eV Core-core repulsion = 21774.999940 eV Total energy + Delta-G solvation = -3759.320974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14624 -39.37848 -38.60308 -37.66100 -34.46556 -33.89652 -32.93746 -32.14944 -30.81128 -29.58056 -27.08628 -25.41852 -25.00007 -23.97672 -23.21344 -22.53760 -20.78087 -20.15277 -18.97891 -18.43098 -17.66879 -17.34043 -17.17102 -16.46383 -15.76178 -15.48911 -15.21108 -14.86136 -14.72045 -14.52780 -13.95944 -13.85300 -13.69909 -13.35229 -13.13001 -13.01673 -12.58688 -12.34068 -11.97179 -11.88652 -11.85187 -11.54066 -11.34884 -10.84295 -10.73672 -10.28038 -10.19476 -10.14425 -10.06050 -9.89828 -9.78297 -9.64259 -9.44874 -8.85431 -8.77523 -8.47551 -6.93752 -5.73619 -3.03191 0.42294 0.89680 1.73162 2.81193 2.94121 3.32263 3.46695 3.51969 3.54585 3.73110 4.05629 4.21293 4.37314 4.48260 4.61396 4.65567 4.67148 4.76028 4.88285 5.07282 5.15275 5.22747 5.36192 5.49956 5.50765 5.55673 5.57662 5.60265 5.96502 5.99593 6.08467 6.21627 6.23688 6.28304 6.33895 6.49064 6.74898 6.83058 6.90088 6.92590 7.14401 7.44415 7.75251 7.89494 8.44794 8.51509 9.55440 10.12698 10.46845 11.48761 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014890 B = 0.002798 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.022196 B =10005.206715 C =11609.599308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.151 4.151 3 C 0.079 3.921 4 O -0.264 6.264 5 C 0.139 3.861 6 C -0.178 4.178 7 C -0.110 4.110 8 C 0.055 3.945 9 N -0.420 5.420 10 C 0.049 3.951 11 C 0.564 3.436 12 O -0.512 6.512 13 N -0.700 5.700 14 C 0.125 3.875 15 H 0.113 0.887 16 C -0.163 4.163 17 C 0.172 3.828 18 H 0.068 0.932 19 N -0.706 5.706 20 C -0.242 4.242 21 H 0.073 0.927 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.908 3.092 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.292 1.292 28 C -0.183 4.183 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.165 0.835 37 H 0.404 0.596 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.069 0.931 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 21.597 -17.290 28.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.004 3.996 4 O -0.174 6.174 5 C 0.087 3.913 6 C -0.205 4.205 7 C -0.130 4.130 8 C -0.105 4.105 9 N -0.132 5.132 10 C -0.090 4.090 11 C 0.348 3.652 12 O -0.386 6.386 13 N -0.350 5.350 14 C 0.022 3.978 15 H 0.131 0.869 16 C -0.203 4.203 17 C 0.059 3.941 18 H 0.086 0.914 19 N -0.344 5.344 20 C -0.373 4.373 21 H 0.091 0.909 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.226 4.226 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.182 0.818 37 H 0.240 0.760 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.778 20.489 -16.453 27.404 hybrid contribution -0.689 0.076 -0.313 0.761 sum -8.468 20.564 -16.766 27.851 Atomic orbital electron populations 1.23861 0.95321 1.02531 0.99206 1.22645 0.95624 0.97816 1.00802 1.21993 0.88042 0.97501 0.92103 1.86483 1.40696 1.33196 1.56980 1.20047 0.90767 0.86947 0.93494 1.21753 1.03088 0.93475 1.02176 1.22185 0.94523 0.98481 0.97805 1.22700 0.97536 0.96311 0.93977 1.67632 1.24815 0.98876 1.21829 1.20889 0.94150 0.95048 0.98937 1.17644 0.81616 0.85853 0.80068 1.90870 1.47831 1.32621 1.67289 1.45939 1.31765 1.18133 1.39213 1.22668 0.96660 0.88571 0.89948 0.86932 1.23885 0.95332 1.01344 0.99729 1.20947 0.92946 0.85938 0.94310 0.91367 1.42213 1.85748 0.99638 1.06834 1.19325 1.42214 0.90038 0.85749 0.90884 1.24784 1.02667 0.96411 0.97053 1.69681 1.56410 1.06148 1.25569 0.86095 0.77155 0.79544 0.83249 1.20499 1.21857 1.21871 1.24339 1.02607 1.00389 0.95231 0.87241 0.88427 0.85726 0.90917 0.91414 0.83762 0.84009 0.81797 0.76049 0.90861 0.90209 0.77965 0.93475 0.91229 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 14.31 29.01 0.42 -0.91 16 2 C -0.15 -1.44 9.89 -36.03 -0.36 -1.80 16 3 C 0.08 0.72 5.17 36.01 0.19 0.90 16 4 O -0.26 -3.63 8.18 -40.58 -0.33 -3.97 16 5 C 0.14 1.74 6.71 -38.55 -0.26 1.48 16 6 C -0.18 -1.50 9.13 -39.15 -0.36 -1.85 16 7 C -0.11 -0.75 10.10 -39.36 -0.40 -1.14 16 8 C 0.06 0.46 11.17 -17.55 -0.20 0.26 16 9 N -0.42 -4.98 9.54 -9.71 -0.09 -5.07 16 10 C 0.05 0.70 6.76 -82.89 -0.56 0.14 16 11 C 0.56 9.80 7.80 -12.34 -0.10 9.70 16 12 O -0.51 -10.76 14.76 -16.63 -0.25 -11.00 16 13 N -0.70 -11.09 5.35 -53.97 -0.29 -11.37 16 14 C 0.13 2.27 4.09 -67.12 -0.27 1.99 16 15 H 0.11 2.39 7.50 -51.93 -0.39 2.00 16 16 C -0.16 -2.76 7.58 -25.91 -0.20 -2.96 16 17 C 0.17 3.51 4.57 -67.03 -0.31 3.20 16 18 H 0.07 1.36 8.10 -51.93 -0.42 0.93 16 19 N -0.71 -18.21 5.31 -52.55 -0.28 -18.49 16 20 C -0.24 -6.85 9.97 -15.06 -0.15 -7.00 16 21 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 24 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 C -0.18 -3.46 7.69 -25.83 -0.20 -3.66 16 29 H 0.11 0.74 8.06 -52.49 -0.42 0.32 16 30 H 0.10 0.59 7.90 -52.49 -0.41 0.18 16 31 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.07 0.51 7.69 -51.93 -0.40 0.11 16 33 H 0.07 0.48 7.43 -51.93 -0.39 0.10 16 34 H 0.14 0.78 6.46 -52.49 -0.34 0.45 16 35 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 36 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.40 5.45 8.04 -40.82 -0.33 5.12 16 38 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 39 H 0.08 1.12 8.11 -51.93 -0.42 0.69 16 40 H 0.39 10.64 7.90 -40.82 -0.32 10.32 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -35.10 369.43 -8.74 -43.84 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -5.93 Total: 12.89 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.84 Total: -2.12 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: 0.06 Total: -62.95 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.58 Total: -14.97 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.10 -8.74 -43.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020907149.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.107 kcal (2) G-P(sol) polarization free energy of solvation -35.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds