Wall clock time and date at job start Tue Mar 31 2020 12:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00164 * 2 1 4 4 O 1.42888 * 109.47346 * 134.99954 * 3 2 1 5 5 C 1.35644 * 117.00446 * 180.02562 * 4 3 2 6 6 C 1.39348 * 120.53775 * 359.72215 * 5 4 3 7 7 C 1.38300 * 118.44074 * 179.74067 * 6 5 4 8 8 C 1.38768 * 119.44526 * 0.55131 * 7 6 5 9 9 N 1.31378 * 121.06495 * 359.71194 * 8 7 6 10 10 C 1.32855 * 121.69740 * 359.97438 * 9 8 7 11 11 C 1.47823 * 119.78601 * 180.02562 * 10 9 8 12 12 O 1.21555 * 120.00805 * 180.02562 * 11 10 9 13 13 N 1.34781 * 119.99979 * 0.02562 * 11 10 9 14 14 C 1.46498 * 120.00257 * 180.02562 * 13 11 10 15 15 H 1.08999 * 112.84956 * 25.33325 * 14 13 11 16 16 C 1.53785 * 113.61382 * 156.52671 * 14 13 11 17 17 C 1.53787 * 87.07778 * 139.98167 * 16 14 13 18 18 H 1.09000 * 113.60956 * 220.01671 * 17 16 14 19 19 N 1.46496 * 113.61235 * 89.20094 * 17 16 14 20 20 C 1.36941 * 119.99696 * 154.99815 * 19 17 16 21 21 H 1.08003 * 120.00223 * 0.02562 * 20 19 17 22 22 C 1.38817 * 120.00164 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99824 * 359.97438 * 22 20 19 24 24 Si 1.86790 * 120.00286 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46993 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47625 * 119.99818 * 24 22 20 27 27 H 1.48503 * 109.47223 * 239.99799 * 24 22 20 28 28 C 1.53777 * 113.61498 * 254.13620 * 14 13 11 29 29 H 1.07999 * 120.00108 * 179.72930 * 1 2 3 30 30 H 1.08000 * 119.99390 * 359.72719 * 1 2 3 31 31 H 1.08005 * 119.99846 * 180.27284 * 2 1 3 32 32 H 1.08999 * 109.46719 * 254.99715 * 3 2 1 33 33 H 1.08998 * 109.46973 * 14.99603 * 3 2 1 34 34 H 1.07999 * 120.77949 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.27888 * 180.26854 * 7 6 5 36 36 H 1.07999 * 119.46817 * 179.67593 * 8 7 6 37 37 H 0.97005 * 119.99846 * 359.97438 * 13 11 10 38 38 H 1.09007 * 113.61347 * 254.52633 * 16 14 13 39 39 H 1.08993 * 113.61714 * 25.35121 * 16 14 13 40 40 H 0.96998 * 120.00292 * 334.99402 * 19 17 16 41 41 H 0.96990 * 120.00188 * 179.97438 * 23 22 20 42 42 H 1.09003 * 113.61364 * 334.56416 * 28 14 13 43 43 H 1.08994 * 113.61655 * 105.46696 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9076 2.3432 1.0787 6 6 3.6687 3.4733 0.2992 7 6 4.4883 4.5746 0.4672 8 6 5.5232 4.5203 1.3901 9 7 5.7332 3.4420 2.1105 10 6 4.9693 2.3618 1.9894 11 6 5.2434 1.1714 2.8219 12 8 4.5472 0.1808 2.7140 13 7 6.2652 1.1844 3.7006 14 6 6.5372 0.0045 4.5253 15 1 6.1816 -0.9204 4.0712 16 6 7.9884 -0.0743 5.0282 17 6 7.4148 -0.5707 6.3659 18 1 7.9210 -0.1572 7.2382 19 7 7.2605 -2.0259 6.4344 20 6 7.2648 -2.6584 7.6489 21 1 7.3815 -2.0845 8.5564 22 6 7.1181 -4.0373 7.7139 23 7 6.9743 -4.7367 6.6082 24 14 7.1232 -4.9001 9.3706 25 1 7.2983 -3.8963 10.4509 26 1 5.8349 -5.6135 9.5613 27 1 8.2412 -5.8765 9.4168 28 6 6.1172 0.1703 5.9953 29 1 -0.5400 -0.9353 -0.0044 30 1 -0.5399 0.9354 0.0045 31 1 1.8500 -0.9354 -0.0045 32 1 2.4756 1.4867 -0.9926 33 1 1.3856 2.1161 0.2659 34 1 2.8602 3.4902 -0.4166 35 1 4.3271 5.4677 -0.1183 36 1 6.1667 5.3782 1.5178 37 1 6.8210 1.9748 3.7865 38 1 8.5909 -0.8192 4.5081 39 1 8.4805 0.8959 5.0957 40 1 7.1553 -2.5413 5.6195 41 1 6.8722 -5.7001 6.6535 42 1 6.0963 1.2077 6.3291 43 1 5.2113 -0.3773 6.2550 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020907149.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:34 Heat of formation + Delta-G solvation = 1.356157 kcal Electronic energy + Delta-G solvation = -25535.401196 eV Core-core repulsion = 21774.999940 eV Total energy + Delta-G solvation = -3760.401256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.00179 -40.72686 -39.44282 -39.09591 -35.73569 -35.11668 -34.34228 -33.21292 -31.80525 -31.37456 -27.75436 -26.72820 -26.52589 -25.65736 -24.23116 -23.75756 -21.94639 -20.94230 -20.39575 -19.39360 -19.31483 -18.68803 -18.12315 -17.28221 -17.12385 -16.63885 -16.38582 -16.12703 -15.87816 -15.63318 -15.39041 -15.10107 -14.82076 -14.62756 -14.31254 -14.09980 -13.72395 -13.60480 -13.32699 -13.29495 -13.05879 -12.83534 -12.60924 -12.57944 -12.12079 -12.01772 -11.82952 -11.72536 -11.36797 -11.22082 -10.90957 -10.84193 -10.67758 -10.43904 -10.00089 -9.49432 -9.03807 -7.95721 -5.25962 -0.36982 0.21819 1.05931 1.46778 1.48615 1.58770 1.76220 2.12509 2.25668 2.55190 2.82271 3.21365 3.35846 3.55911 3.63240 3.66839 3.83183 3.88833 3.89562 4.02184 4.03902 4.13123 4.25781 4.28659 4.33072 4.45540 4.48917 4.77334 4.81543 4.87966 4.91004 4.99671 5.01039 5.15459 5.23169 5.30900 5.41868 5.51054 5.56017 5.62690 5.67677 6.21302 6.26511 6.50114 6.83734 7.26986 7.30791 8.06340 8.28636 9.28189 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014890 B = 0.002798 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.022196 B =10005.206715 C =11609.599308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.185 4.185 3 C 0.075 3.925 4 O -0.305 6.305 5 C 0.121 3.879 6 C -0.173 4.173 7 C -0.084 4.084 8 C 0.055 3.945 9 N -0.436 5.436 10 C 0.005 3.995 11 C 0.557 3.443 12 O -0.566 6.566 13 N -0.688 5.688 14 C 0.129 3.871 15 H 0.070 0.930 16 C -0.137 4.137 17 C 0.155 3.845 18 H 0.082 0.918 19 N -0.723 5.723 20 C -0.242 4.242 21 H 0.083 0.917 22 C -0.081 4.081 23 N -0.973 5.973 24 Si 0.978 3.022 25 H -0.261 1.261 26 H -0.297 1.297 27 H -0.292 1.292 28 C -0.170 4.170 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.177 0.823 35 H 0.192 0.808 36 H 0.202 0.798 37 H 0.418 0.582 38 H 0.063 0.937 39 H 0.124 0.876 40 H 0.371 0.629 41 H 0.251 0.749 42 H 0.102 0.898 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.993 26.057 -18.002 32.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.203 4.203 3 C 0.001 3.999 4 O -0.216 6.216 5 C 0.070 3.930 6 C -0.199 4.199 7 C -0.104 4.104 8 C -0.107 4.107 9 N -0.148 5.148 10 C -0.131 4.131 11 C 0.343 3.657 12 O -0.444 6.444 13 N -0.339 5.339 14 C 0.024 3.976 15 H 0.088 0.912 16 C -0.176 4.176 17 C 0.044 3.956 18 H 0.100 0.900 19 N -0.361 5.361 20 C -0.374 4.374 21 H 0.101 0.899 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.807 3.193 25 H -0.185 1.185 26 H -0.224 1.224 27 H -0.219 1.219 28 C -0.212 4.212 29 H 0.133 0.867 30 H 0.139 0.861 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.195 0.805 35 H 0.209 0.791 36 H 0.219 0.781 37 H 0.256 0.744 38 H 0.082 0.918 39 H 0.142 0.858 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.120 0.880 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.786 25.021 -17.145 31.315 hybrid contribution -0.744 -1.096 -0.213 1.342 sum -8.530 23.925 -17.357 30.764 Atomic orbital electron populations 1.24100 0.94596 1.03933 0.96425 1.22681 0.96534 0.97588 1.03497 1.22227 0.87587 0.97686 0.92372 1.86436 1.41994 1.34697 1.58492 1.20314 0.90517 0.88026 0.94174 1.22174 1.03993 0.92190 1.01521 1.22767 0.92209 0.99161 0.96254 1.23485 0.98202 0.95934 0.93085 1.67548 1.24871 0.99202 1.23165 1.20365 0.96857 0.94982 1.00878 1.18301 0.80802 0.86571 0.79989 1.90828 1.49619 1.34984 1.68954 1.45728 1.31831 1.17694 1.38649 1.22274 0.97548 0.88095 0.89664 0.91182 1.23728 0.94324 1.02953 0.96597 1.21243 0.94277 0.83344 0.96701 0.90028 1.42419 1.86167 1.01918 1.05565 1.19772 1.40235 0.90469 0.86905 0.89880 1.25677 1.03531 0.97393 1.00645 1.69858 1.58576 1.05983 1.27906 0.85001 0.76522 0.78388 0.79408 1.18535 1.22402 1.21870 1.24208 1.00031 1.01373 0.95634 0.86702 0.86071 0.88290 0.88895 0.89045 0.80539 0.79103 0.78115 0.74357 0.91828 0.85810 0.79703 0.94050 0.87964 0.94630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 14.31 67.78 0.97 -1.30 16 2 C -0.18 -3.72 9.89 25.64 0.25 -3.47 16 3 C 0.08 1.34 5.17 71.24 0.37 1.71 16 4 O -0.31 -8.81 8.18 -68.60 -0.56 -9.37 16 5 C 0.12 2.99 6.71 22.94 0.15 3.14 16 6 C -0.17 -2.31 9.13 22.55 0.21 -2.10 16 7 C -0.08 -0.71 10.10 22.41 0.23 -0.49 16 8 C 0.06 0.70 11.17 84.89 0.95 1.64 16 9 N -0.44 -9.59 9.54 -184.63 -1.76 -11.35 16 10 C 0.01 0.15 6.76 41.93 0.28 0.43 16 11 C 0.56 20.50 7.80 86.78 0.68 21.17 16 12 O -0.57 -26.04 14.76 17.10 0.25 -25.79 16 13 N -0.69 -22.31 5.35 -442.93 -2.37 -24.68 16 14 C 0.13 4.87 4.09 45.52 0.19 5.06 16 15 H 0.07 3.28 7.50 -2.39 -0.02 3.26 16 16 C -0.14 -4.56 7.58 31.12 0.24 -4.32 16 17 C 0.16 6.35 4.57 45.58 0.21 6.56 16 18 H 0.08 3.12 8.10 -2.39 -0.02 3.11 16 19 N -0.72 -38.62 5.31 -320.16 -1.70 -40.32 16 20 C -0.24 -13.94 9.97 84.03 0.84 -13.11 16 21 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 22 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 23 N -0.97 -62.57 13.06 21.65 0.28 -62.28 16 24 Si 0.98 47.74 29.55 68.60 2.03 49.77 16 25 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 28 C -0.17 -6.55 7.69 31.18 0.24 -6.31 16 29 H 0.11 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.12 1.20 7.90 -2.91 -0.02 1.17 16 31 H 0.10 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.09 1.18 7.69 -2.39 -0.02 1.16 16 33 H 0.09 1.12 7.43 -2.39 -0.02 1.10 16 34 H 0.18 1.11 6.46 -2.91 -0.02 1.09 16 35 H 0.19 -0.20 8.06 -2.91 -0.02 -0.23 16 36 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 37 H 0.42 10.93 8.04 -92.70 -0.74 10.18 16 38 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.12 3.07 8.11 -2.39 -0.02 3.05 16 40 H 0.37 21.69 7.90 -92.71 -0.73 20.96 16 41 H 0.25 15.57 8.31 -92.72 -0.77 14.80 16 42 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.03 1.60 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -84.16 369.43 2.00 -82.16 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -0.44 Total: 37.60 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 6.26 Total: 4.27 kcal Atomic # 7 Polarization: -133.09 SS G_CDS: -5.55 Total: -138.64 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.31 Total: -35.16 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -84.16 2.00 -82.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020907149.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.517 kcal (2) G-P(sol) polarization free energy of solvation -84.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds