Wall clock time and date at job start Tue Mar 31 2020 12:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99728 * 2 1 4 4 O 1.42903 * 109.46878 * 134.99713 * 3 2 1 5 5 C 1.35652 * 116.99750 * 179.97438 * 4 3 2 6 6 C 1.39344 * 120.54095 * 0.02562 * 5 4 3 7 7 C 1.38302 * 118.43830 * 180.02562 * 6 5 4 8 8 C 1.38764 * 119.44714 * 0.02562 * 7 6 5 9 9 N 1.31372 * 121.06528 * 359.97134 * 8 7 6 10 10 C 1.32857 * 121.69838 * 359.75865 * 9 8 7 11 11 C 1.47838 * 119.78766 * 180.26652 * 10 9 8 12 12 O 1.21545 * 120.00006 * 180.26631 * 11 10 9 13 13 N 1.34775 * 119.99764 * 0.25999 * 11 10 9 14 14 C 1.46495 * 120.00120 * 180.02562 * 13 11 10 15 15 H 1.09002 * 112.84773 * 23.80602 * 14 13 11 16 16 C 1.53786 * 113.61772 * 155.00424 * 14 13 11 17 17 C 1.53775 * 87.08083 * 139.98321 * 16 14 13 18 18 H 1.08991 * 113.61746 * 89.11974 * 17 16 14 19 19 N 1.46504 * 113.61391 * 219.93714 * 17 16 14 20 20 C 1.36932 * 120.00324 * 205.00052 * 19 17 16 21 21 H 1.08001 * 120.00097 * 0.02562 * 20 19 17 22 22 C 1.38817 * 120.00343 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99893 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99973 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47192 * 90.00392 * 24 22 20 26 26 H 1.48507 * 109.46869 * 210.00399 * 24 22 20 27 27 H 1.48496 * 109.47282 * 329.99805 * 24 22 20 28 28 C 1.53781 * 113.61570 * 252.50309 * 14 13 11 29 29 H 1.07994 * 120.00340 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99510 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.00120 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47060 * 254.99843 * 3 2 1 33 33 H 1.09001 * 109.47380 * 14.99931 * 3 2 1 34 34 H 1.08001 * 120.77810 * 0.02562 * 6 5 4 35 35 H 1.08007 * 120.27758 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.46605 * 180.02562 * 8 7 6 37 37 H 0.97008 * 119.99710 * 0.02562 * 13 11 10 38 38 H 1.08999 * 113.61223 * 254.52944 * 16 14 13 39 39 H 1.09003 * 113.61004 * 25.43235 * 16 14 13 40 40 H 0.97007 * 119.99769 * 24.99610 * 19 17 16 41 41 H 0.96995 * 120.00583 * 179.97438 * 23 22 20 42 42 H 1.09006 * 113.61513 * 334.56541 * 28 14 13 43 43 H 1.09001 * 113.61693 * 105.46586 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9082 2.3430 1.0781 6 6 3.6660 3.4749 0.3023 7 6 4.4901 4.5736 0.4652 8 6 5.5257 4.5190 1.3872 9 7 5.7354 3.4408 2.1080 10 6 4.9677 2.3628 1.9911 11 6 5.2383 1.1744 2.8278 12 8 4.5415 0.1843 2.7207 13 7 6.2577 1.1888 3.7093 14 6 6.5262 0.0110 4.5381 15 1 6.1474 -0.9114 4.0980 16 6 7.9851 -0.0875 5.0145 17 6 7.4287 -0.5644 6.3665 18 1 7.2963 -1.6445 6.4276 19 7 8.1408 -0.0123 7.5217 20 6 8.1359 -0.6849 8.7145 21 1 7.6074 -1.6225 8.8036 22 6 8.8110 -0.1620 9.8090 23 7 9.4554 0.9804 9.7004 24 14 8.8048 -1.0799 11.4358 25 1 9.9598 -2.0120 11.4827 26 1 8.9080 -0.1073 12.5533 27 1 7.5416 -1.8499 11.5650 28 6 6.1389 0.1956 6.0148 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9352 0.0004 32 1 2.4755 1.4868 -0.9927 33 1 1.3855 2.1161 0.2660 34 1 2.8538 3.4938 -0.4093 35 1 4.3289 5.4668 -0.1204 36 1 6.1691 5.3769 1.5149 37 1 6.8136 1.9792 3.7950 38 1 8.5656 -0.8458 4.4893 39 1 8.4933 0.8754 5.0666 40 1 8.6158 0.8297 7.4416 41 1 9.9269 1.3460 10.4652 42 1 6.1424 1.2359 6.3405 43 1 5.2291 -0.3342 6.2972 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022957357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:38 Heat of formation + Delta-G solvation = 24.364711 kcal Electronic energy + Delta-G solvation = -25324.973720 eV Core-core repulsion = 21565.570190 eV Total energy + Delta-G solvation = -3759.403530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.17707 -39.41747 -38.63337 -37.66684 -34.54166 -33.96488 -33.00055 -32.18741 -30.84249 -29.74495 -27.14392 -25.43514 -25.02178 -24.11912 -23.23098 -22.16575 -20.63732 -20.19745 -19.39942 -18.56557 -17.74927 -17.36954 -16.99967 -16.52126 -15.93625 -15.51813 -15.29836 -14.88536 -14.66199 -14.37796 -14.36654 -13.83498 -13.74781 -13.40720 -13.15830 -12.97323 -12.76706 -12.37374 -12.01880 -11.93807 -11.81314 -11.42948 -11.20517 -10.87985 -10.58245 -10.44009 -10.31319 -10.20209 -10.18946 -10.00342 -9.92606 -9.65956 -9.48640 -8.85558 -8.81388 -8.53535 -6.92781 -5.75274 -3.03731 0.40181 0.88275 1.64705 2.76258 2.88442 3.26566 3.45882 3.51201 3.52889 3.69233 4.03919 4.18536 4.33405 4.43415 4.59363 4.61894 4.65512 4.71788 4.86301 5.00024 5.12115 5.20299 5.32983 5.42205 5.47159 5.54104 5.54251 5.58556 5.94165 5.97841 6.04205 6.13924 6.19617 6.21390 6.35095 6.41008 6.63777 6.70285 6.84944 6.87678 7.15813 7.43865 7.73452 7.84409 8.42604 8.43660 9.54527 10.12128 10.46867 11.47215 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018680 B = 0.002435 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.567315 B =11495.177319 C =12551.653118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.151 4.151 3 C 0.078 3.922 4 O -0.265 6.265 5 C 0.138 3.862 6 C -0.178 4.178 7 C -0.109 4.109 8 C 0.058 3.942 9 N -0.418 5.418 10 C 0.048 3.952 11 C 0.568 3.432 12 O -0.521 6.521 13 N -0.696 5.696 14 C 0.117 3.883 15 H 0.110 0.890 16 C -0.158 4.158 17 C 0.169 3.831 18 H 0.080 0.920 19 N -0.710 5.710 20 C -0.242 4.242 21 H 0.072 0.928 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.175 4.175 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.166 0.834 37 H 0.408 0.592 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.080 0.920 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.406 6.965 -25.414 30.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.003 3.997 4 O -0.175 6.175 5 C 0.087 3.913 6 C -0.205 4.205 7 C -0.129 4.129 8 C -0.103 4.103 9 N -0.130 5.130 10 C -0.091 4.091 11 C 0.352 3.648 12 O -0.396 6.396 13 N -0.346 5.346 14 C 0.013 3.987 15 H 0.127 0.873 16 C -0.198 4.198 17 C 0.056 3.944 18 H 0.098 0.902 19 N -0.348 5.348 20 C -0.373 4.373 21 H 0.090 0.910 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.218 4.218 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.141 0.859 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.183 0.817 37 H 0.244 0.756 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.225 5.845 -24.579 28.994 hybrid contribution -0.396 0.673 0.068 0.784 sum -14.621 6.518 -24.511 29.276 Atomic orbital electron populations 1.23867 0.95337 1.02564 0.99152 1.22625 0.95592 0.97765 1.00873 1.21989 0.88104 0.97462 0.92149 1.86463 1.40712 1.33320 1.57023 1.20023 0.90796 0.86932 0.93595 1.21747 1.02981 0.93466 1.02299 1.22205 0.94436 0.98514 0.97748 1.22734 0.97506 0.96276 0.93754 1.67648 1.24740 0.98902 1.21683 1.20849 0.94256 0.95154 0.98871 1.17620 0.81382 0.85821 0.79977 1.90818 1.47990 1.32799 1.67978 1.45876 1.31864 1.18275 1.38581 1.22532 0.97333 0.88666 0.90211 0.87257 1.23861 0.94760 1.02156 0.98991 1.21350 0.90633 0.96384 0.86023 0.90235 1.42362 1.60075 1.25649 1.06729 1.19322 1.26708 1.03223 0.88073 0.91003 1.24765 1.00470 0.97452 0.98309 1.69658 1.38258 1.19721 1.30487 0.86177 0.77654 0.78628 0.83671 1.21708 1.21807 1.20717 1.24333 1.01283 1.02435 0.93720 0.88365 0.87287 0.85852 0.90922 0.91381 0.83768 0.83943 0.81672 0.75605 0.91494 0.89864 0.78060 0.93497 0.90160 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 14.31 29.01 0.42 -0.70 16 2 C -0.15 -1.24 9.89 -36.03 -0.36 -1.59 16 3 C 0.08 0.64 5.17 36.01 0.19 0.82 16 4 O -0.27 -3.38 8.18 -40.61 -0.33 -3.71 16 5 C 0.14 1.65 6.71 -38.55 -0.26 1.39 16 6 C -0.18 -1.44 9.13 -39.15 -0.36 -1.80 16 7 C -0.11 -0.74 10.10 -39.36 -0.40 -1.14 16 8 C 0.06 0.50 11.17 -17.55 -0.20 0.31 16 9 N -0.42 -5.09 9.54 -9.71 -0.09 -5.18 16 10 C 0.05 0.67 6.76 -82.88 -0.56 0.10 16 11 C 0.57 9.32 7.80 -12.33 -0.10 9.22 16 12 O -0.52 -9.92 14.74 -16.62 -0.24 -10.16 16 13 N -0.70 -10.77 5.34 -53.96 -0.29 -11.06 16 14 C 0.12 1.93 4.24 -67.12 -0.28 1.65 16 15 H 0.11 1.84 7.46 -51.93 -0.39 1.45 16 16 C -0.16 -2.66 7.58 -25.92 -0.20 -2.85 16 17 C 0.17 3.42 4.48 -67.12 -0.30 3.12 16 18 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 19 N -0.71 -18.00 5.40 -52.64 -0.28 -18.29 16 20 C -0.24 -6.80 9.97 -15.06 -0.15 -6.95 16 21 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 24 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 C -0.18 -3.28 7.68 -25.92 -0.20 -3.48 16 29 H 0.10 0.50 7.90 -52.49 -0.41 0.09 16 30 H 0.11 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.07 0.44 7.70 -51.93 -0.40 0.04 16 33 H 0.07 0.44 7.42 -51.93 -0.39 0.05 16 34 H 0.14 0.73 6.46 -52.49 -0.34 0.39 16 35 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 36 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.41 5.83 8.05 -40.82 -0.33 5.50 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 40 H 0.39 10.29 7.92 -40.82 -0.32 9.97 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -34.43 369.54 -8.75 -43.17 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -5.92 Total: 12.10 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -2.85 Total: -2.41 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: 0.06 Total: -62.15 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.58 Total: -13.87 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.43 -8.75 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022957357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.536 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds