Wall clock time and date at job start Tue Mar 31 2020 12:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99728 * 2 1 4 4 O 1.42903 * 109.46878 * 134.99713 * 3 2 1 5 5 C 1.35652 * 116.99750 * 179.97438 * 4 3 2 6 6 C 1.39344 * 120.54095 * 0.02562 * 5 4 3 7 7 C 1.38302 * 118.43830 * 180.02562 * 6 5 4 8 8 C 1.38764 * 119.44714 * 0.02562 * 7 6 5 9 9 N 1.31372 * 121.06528 * 359.97134 * 8 7 6 10 10 C 1.32857 * 121.69838 * 359.75865 * 9 8 7 11 11 C 1.47838 * 119.78766 * 180.26652 * 10 9 8 12 12 O 1.21545 * 120.00006 * 180.26631 * 11 10 9 13 13 N 1.34775 * 119.99764 * 0.25999 * 11 10 9 14 14 C 1.46495 * 120.00120 * 180.02562 * 13 11 10 15 15 H 1.09002 * 112.84773 * 23.80602 * 14 13 11 16 16 C 1.53786 * 113.61772 * 155.00424 * 14 13 11 17 17 C 1.53775 * 87.08083 * 139.98321 * 16 14 13 18 18 H 1.08991 * 113.61746 * 89.11974 * 17 16 14 19 19 N 1.46504 * 113.61391 * 219.93714 * 17 16 14 20 20 C 1.36932 * 120.00324 * 205.00052 * 19 17 16 21 21 H 1.08001 * 120.00097 * 0.02562 * 20 19 17 22 22 C 1.38817 * 120.00343 * 179.97438 * 20 19 17 23 23 N 1.31617 * 119.99893 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99973 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47192 * 90.00392 * 24 22 20 26 26 H 1.48507 * 109.46869 * 210.00399 * 24 22 20 27 27 H 1.48496 * 109.47282 * 329.99805 * 24 22 20 28 28 C 1.53781 * 113.61570 * 252.50309 * 14 13 11 29 29 H 1.07994 * 120.00340 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99510 * 180.02562 * 1 2 3 31 31 H 1.07993 * 120.00120 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47060 * 254.99843 * 3 2 1 33 33 H 1.09001 * 109.47380 * 14.99931 * 3 2 1 34 34 H 1.08001 * 120.77810 * 0.02562 * 6 5 4 35 35 H 1.08007 * 120.27758 * 180.02562 * 7 6 5 36 36 H 1.07999 * 119.46605 * 180.02562 * 8 7 6 37 37 H 0.97008 * 119.99710 * 0.02562 * 13 11 10 38 38 H 1.08999 * 113.61223 * 254.52944 * 16 14 13 39 39 H 1.09003 * 113.61004 * 25.43235 * 16 14 13 40 40 H 0.97007 * 119.99769 * 24.99610 * 19 17 16 41 41 H 0.96995 * 120.00583 * 179.97438 * 23 22 20 42 42 H 1.09006 * 113.61513 * 334.56541 * 28 14 13 43 43 H 1.09001 * 113.61693 * 105.46586 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9082 2.3430 1.0781 6 6 3.6660 3.4749 0.3023 7 6 4.4901 4.5736 0.4652 8 6 5.5257 4.5190 1.3872 9 7 5.7354 3.4408 2.1080 10 6 4.9677 2.3628 1.9911 11 6 5.2383 1.1744 2.8278 12 8 4.5415 0.1843 2.7207 13 7 6.2577 1.1888 3.7093 14 6 6.5262 0.0110 4.5381 15 1 6.1474 -0.9114 4.0980 16 6 7.9851 -0.0875 5.0145 17 6 7.4287 -0.5644 6.3665 18 1 7.2963 -1.6445 6.4276 19 7 8.1408 -0.0123 7.5217 20 6 8.1359 -0.6849 8.7145 21 1 7.6074 -1.6225 8.8036 22 6 8.8110 -0.1620 9.8090 23 7 9.4554 0.9804 9.7004 24 14 8.8048 -1.0799 11.4358 25 1 9.9598 -2.0120 11.4827 26 1 8.9080 -0.1073 12.5533 27 1 7.5416 -1.8499 11.5650 28 6 6.1389 0.1956 6.0148 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8500 -0.9352 0.0004 32 1 2.4755 1.4868 -0.9927 33 1 1.3855 2.1161 0.2660 34 1 2.8538 3.4938 -0.4093 35 1 4.3289 5.4668 -0.1204 36 1 6.1691 5.3769 1.5149 37 1 6.8136 1.9792 3.7950 38 1 8.5656 -0.8458 4.4893 39 1 8.4933 0.8754 5.0666 40 1 8.6158 0.8297 7.4416 41 1 9.9269 1.3460 10.4652 42 1 6.1424 1.2359 6.3405 43 1 5.2291 -0.3342 6.2972 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022957357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:37 Heat of formation + Delta-G solvation = 0.942856 kcal Electronic energy + Delta-G solvation = -25325.989368 eV Core-core repulsion = 21565.570190 eV Total energy + Delta-G solvation = -3760.419178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.99871 -40.69125 -39.42193 -39.05625 -35.77574 -35.09533 -34.33783 -33.21987 -31.88080 -31.42324 -27.73745 -26.76790 -26.52507 -25.69140 -24.01576 -23.51288 -21.75970 -21.03958 -20.76395 -19.45616 -19.11480 -18.65874 -18.13582 -17.36905 -17.18299 -16.53131 -16.22511 -16.11240 -16.02535 -15.68680 -15.34470 -14.97867 -14.93742 -14.66649 -14.28797 -14.10251 -13.72148 -13.58682 -13.32515 -13.15488 -13.05067 -12.81795 -12.56920 -12.23388 -12.19398 -12.07069 -11.98910 -11.75880 -11.51582 -11.22286 -10.87247 -10.85154 -10.67008 -10.41992 -10.00353 -9.49641 -8.98737 -7.94432 -5.22926 -0.37130 0.21230 1.08384 1.48084 1.49680 1.58152 1.74946 2.11694 2.25766 2.57564 2.81747 3.20860 3.36692 3.55932 3.66081 3.70830 3.85029 3.90036 3.96574 4.01404 4.05940 4.13282 4.23588 4.29702 4.30667 4.47720 4.48421 4.71510 4.87388 4.88045 4.89140 4.93055 5.00359 5.12796 5.14302 5.37831 5.40738 5.51542 5.59129 5.64675 5.67434 6.20611 6.27569 6.48663 6.82219 7.22263 7.33873 8.08983 8.33310 9.28814 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018680 B = 0.002435 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.567315 B =11495.177319 C =12551.653118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.181 4.181 3 C 0.073 3.927 4 O -0.301 6.301 5 C 0.125 3.875 6 C -0.172 4.172 7 C -0.085 4.085 8 C 0.052 3.948 9 N -0.442 5.442 10 C 0.003 3.997 11 C 0.563 3.437 12 O -0.558 6.558 13 N -0.693 5.693 14 C 0.134 3.866 15 H 0.109 0.891 16 C -0.139 4.139 17 C 0.154 3.846 18 H 0.082 0.918 19 N -0.723 5.723 20 C -0.245 4.245 21 H 0.077 0.923 22 C -0.076 4.076 23 N -0.969 5.969 24 Si 0.973 3.027 25 H -0.285 1.285 26 H -0.296 1.296 27 H -0.271 1.271 28 C -0.170 4.170 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.179 0.821 35 H 0.190 0.810 36 H 0.196 0.804 37 H 0.414 0.586 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.067 0.933 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.689 8.489 -27.499 32.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.199 4.199 3 C -0.001 4.001 4 O -0.212 6.212 5 C 0.074 3.926 6 C -0.198 4.198 7 C -0.104 4.104 8 C -0.110 4.110 9 N -0.154 5.154 10 C -0.133 4.133 11 C 0.350 3.650 12 O -0.436 6.436 13 N -0.343 5.343 14 C 0.028 3.972 15 H 0.126 0.874 16 C -0.179 4.179 17 C 0.043 3.957 18 H 0.100 0.900 19 N -0.361 5.361 20 C -0.377 4.377 21 H 0.095 0.905 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.802 3.198 25 H -0.212 1.212 26 H -0.222 1.222 27 H -0.196 1.196 28 C -0.212 4.212 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.196 0.804 35 H 0.208 0.792 36 H 0.213 0.787 37 H 0.251 0.749 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.208 0.792 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.535 7.337 -26.702 31.752 hybrid contribution -0.109 0.288 0.559 0.639 sum -15.645 7.625 -26.142 31.406 Atomic orbital electron populations 1.24100 0.94718 1.03873 0.96585 1.22658 0.96374 0.97512 1.03332 1.22246 0.87583 0.97886 0.92363 1.86416 1.41867 1.34412 1.58466 1.20231 0.90416 0.88028 0.93952 1.22176 1.03801 0.92158 1.01697 1.22743 0.92187 0.99341 0.96174 1.23420 0.98401 0.95885 0.93286 1.67560 1.25191 0.99487 1.23126 1.20448 0.96853 0.95140 1.00870 1.18142 0.80563 0.86511 0.79804 1.90776 1.49170 1.34487 1.69208 1.45782 1.32096 1.18017 1.38395 1.22230 0.96683 0.89232 0.89033 0.87359 1.23666 0.95104 1.02567 0.96530 1.21635 0.91389 0.96581 0.86057 0.89955 1.42507 1.60713 1.25352 1.07490 1.19712 1.25650 1.03215 0.89136 0.90537 1.25576 1.00967 0.98550 1.01746 1.69810 1.39633 1.21365 1.31131 0.85138 0.77961 0.77311 0.79345 1.21250 1.22226 1.19607 1.24165 1.00200 1.01244 0.95552 0.86485 0.86502 0.87712 0.88937 0.89353 0.80367 0.79242 0.78721 0.74936 0.89690 0.89698 0.79246 0.93994 0.91427 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 14.31 67.78 0.97 -0.83 16 2 C -0.18 -2.94 9.89 25.64 0.25 -2.68 16 3 C 0.07 1.11 5.17 71.24 0.37 1.47 16 4 O -0.30 -7.72 8.18 -68.69 -0.56 -8.28 16 5 C 0.12 2.90 6.71 22.94 0.15 3.05 16 6 C -0.17 -2.21 9.13 22.55 0.21 -2.01 16 7 C -0.09 -0.78 10.10 22.41 0.23 -0.56 16 8 C 0.05 0.75 11.17 84.89 0.95 1.70 16 9 N -0.44 -10.40 9.54 -184.63 -1.76 -12.16 16 10 C 0.00 0.09 6.76 41.93 0.28 0.37 16 11 C 0.56 19.22 7.80 86.78 0.68 19.90 16 12 O -0.56 -22.34 14.74 17.13 0.25 -22.09 16 13 N -0.69 -22.03 5.34 -442.92 -2.37 -24.40 16 14 C 0.13 4.47 4.24 45.52 0.19 4.67 16 15 H 0.11 3.71 7.46 -2.39 -0.02 3.69 16 16 C -0.14 -4.66 7.58 31.12 0.24 -4.43 16 17 C 0.15 6.31 4.48 45.52 0.20 6.52 16 18 H 0.08 3.32 8.10 -2.39 -0.02 3.30 16 19 N -0.72 -37.31 5.40 -320.45 -1.73 -39.04 16 20 C -0.25 -13.91 9.97 84.04 0.84 -13.07 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 23 N -0.97 -59.99 13.06 21.65 0.28 -59.70 16 24 Si 0.97 46.94 29.55 68.60 2.03 48.97 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 28 C -0.17 -6.50 7.68 31.12 0.24 -6.26 16 29 H 0.12 0.89 7.90 -2.91 -0.02 0.87 16 30 H 0.12 1.12 8.06 -2.91 -0.02 1.09 16 31 H 0.10 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.09 0.94 7.70 -2.39 -0.02 0.92 16 33 H 0.09 0.91 7.42 -2.39 -0.02 0.89 16 34 H 0.18 0.97 6.46 -2.91 -0.02 0.95 16 35 H 0.19 -0.01 8.06 -2.91 -0.02 -0.04 16 36 H 0.20 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.41 12.10 8.05 -92.70 -0.75 11.35 16 38 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 39 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 40 H 0.38 20.58 7.92 -92.70 -0.73 19.84 16 41 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 43 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -77.95 369.54 1.96 -75.99 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -0.44 Total: 36.87 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 6.26 Total: 3.86 kcal Atomic # 7 Polarization: -129.73 SS G_CDS: -5.58 Total: -135.31 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.31 Total: -30.37 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -77.95 1.96 -75.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022957357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.929 kcal (2) G-P(sol) polarization free energy of solvation -77.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds