Wall clock time and date at job start Tue Mar 31 2020 12:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46863 * 2 1 4 4 O 1.21294 * 119.99666 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99906 * 179.97438 * 3 2 1 6 6 C 1.39954 * 119.99842 * 185.27712 * 5 3 2 7 7 C 1.38995 * 120.00121 * 213.33177 * 6 5 3 8 8 C 1.38211 * 120.22201 * 180.02562 * 7 6 5 9 9 C 1.38016 * 120.22406 * 359.68057 * 8 7 6 10 10 C 1.39576 * 119.99760 * 0.61401 * 9 8 7 11 11 C 1.47858 * 120.11455 * 179.67605 * 10 9 8 12 12 O 1.21553 * 120.00346 * 179.72927 * 11 10 9 13 13 N 1.34777 * 119.99909 * 359.73090 * 11 10 9 14 14 C 1.46501 * 120.00170 * 179.97438 * 13 11 10 15 15 C 1.53945 * 113.73899 * 106.26003 * 14 13 11 16 16 N 1.47805 * 86.03822 * 90.88715 * 15 14 13 17 17 C 1.36942 * 134.45997 * 204.64835 * 16 15 14 18 18 H 1.07996 * 120.00098 * 179.86249 * 17 16 15 19 19 C 1.38808 * 119.99564 * 359.86132 * 17 16 15 20 20 N 1.31624 * 120.00158 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99908 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47013 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47153 * 120.00048 * 21 19 17 24 24 H 1.48503 * 109.47127 * 239.99828 * 21 19 17 25 25 C 1.47581 * 91.05281 * 24.54436 * 16 15 14 26 26 C 1.38600 * 120.00025 * 33.35345 * 6 5 3 27 27 H 1.09001 * 109.47445 * 299.99617 * 1 2 3 28 28 H 1.08998 * 109.47248 * 60.00025 * 1 2 3 29 29 H 1.09007 * 109.46558 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47319 * 240.00858 * 2 1 3 31 31 H 1.08998 * 109.47248 * 119.99975 * 2 1 3 32 32 H 0.96996 * 120.00040 * 5.28057 * 5 3 2 33 33 H 1.07995 * 119.88700 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.88256 * 179.97438 * 8 7 6 35 35 H 1.08003 * 120.00264 * 180.32013 * 9 8 7 36 36 H 0.97000 * 119.99922 * 359.97438 * 13 11 10 37 37 H 1.09002 * 112.94423 * 334.67023 * 14 13 11 38 38 H 1.09001 * 113.76823 * 205.14841 * 15 14 13 39 39 H 1.08999 * 113.77224 * 336.54278 * 15 14 13 40 40 H 0.97002 * 120.00039 * 180.02562 * 20 19 17 41 41 H 1.08996 * 113.77377 * 221.15107 * 25 16 15 42 42 H 1.09002 * 113.76207 * 89.75625 * 25 16 15 43 43 H 1.07999 * 120.10806 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2440 2.3427 0.0005 5 7 3.3573 1.6672 0.0005 6 6 3.8247 2.9817 0.1120 7 6 4.9937 3.3611 -0.5371 8 6 5.4597 4.6578 -0.4297 9 6 4.7637 5.5865 0.3174 10 6 3.5920 5.2140 0.9781 11 6 2.8483 6.2050 1.7850 12 8 1.8255 5.8797 2.3555 13 7 3.3045 7.4690 1.8879 14 6 2.5673 8.4510 2.6869 15 6 3.2434 8.7927 4.0271 16 7 3.9266 9.8758 3.2890 17 6 5.0954 10.5674 3.4649 18 1 5.3796 11.3354 2.7608 19 6 5.9146 10.2814 4.5483 20 7 5.5684 9.3451 5.4062 21 14 7.5087 11.2252 4.7888 22 1 7.6663 12.2172 3.6952 23 1 7.4741 11.9305 6.0951 24 1 8.6526 10.2784 4.7676 25 6 2.8451 9.9110 2.2854 26 6 3.1220 3.9051 0.8700 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 3.9870 0.9335 -0.0764 33 1 5.5402 2.6399 -1.1266 34 1 6.3689 4.9466 -0.9360 35 1 5.1283 6.6002 0.3947 36 1 4.1209 7.7285 1.4329 37 1 1.5070 8.2151 2.7779 38 1 2.5514 9.1495 4.7899 39 1 3.9155 8.0155 4.3909 40 1 6.1407 9.1454 6.1635 41 1 3.1999 10.0250 1.2611 42 1 2.0359 10.5970 2.5355 43 1 2.2138 3.6120 1.3757 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030397357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:59 Heat of formation + Delta-G solvation = 13.771725 kcal Electronic energy + Delta-G solvation = -25736.073182 eV Core-core repulsion = 21976.210305 eV Total energy + Delta-G solvation = -3759.862877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.81834 -39.66013 -38.35032 -37.23078 -34.99633 -33.33741 -33.10706 -31.87808 -31.00137 -29.67517 -27.49416 -25.12320 -24.79518 -24.36872 -22.72951 -22.47620 -20.45940 -20.43441 -19.25489 -18.14173 -17.48302 -16.77527 -16.35181 -16.12905 -15.88389 -15.46450 -14.92810 -14.75631 -14.43824 -14.29200 -13.90325 -13.77194 -13.61318 -13.50678 -12.76267 -12.68401 -12.58440 -12.51606 -12.10303 -11.96953 -11.66072 -11.56239 -11.49465 -11.22129 -10.89032 -10.61122 -10.53261 -10.23223 -10.04004 -9.81541 -9.57427 -9.48423 -9.00243 -8.84252 -8.36152 -8.27328 -6.89718 -5.76046 -3.09937 0.84603 1.24597 2.32397 2.73090 3.12610 3.37463 3.42878 3.45721 3.58401 3.98508 4.31188 4.44363 4.66251 4.71435 4.76551 4.80954 5.09075 5.10786 5.12703 5.17525 5.39056 5.40374 5.45704 5.48638 5.59622 5.61085 5.81003 5.92805 6.09533 6.13811 6.18273 6.27626 6.31029 6.38237 6.44161 6.55151 6.82944 6.87920 7.08110 7.24607 7.36647 7.62174 7.85508 7.96798 8.05914 8.67227 9.03677 9.70369 10.58754 11.40156 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.002785 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.723380 B =10052.856158 C =10728.842108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.141 4.141 3 C 0.505 3.495 4 O -0.510 6.510 5 N -0.676 5.676 6 C 0.131 3.869 7 C -0.127 4.127 8 C -0.107 4.107 9 C -0.098 4.098 10 C -0.105 4.105 11 C 0.555 3.445 12 O -0.542 6.542 13 N -0.686 5.686 14 C 0.090 3.910 15 C 0.151 3.849 16 N -0.612 5.612 17 C -0.225 4.225 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.917 5.917 21 Si 0.910 3.090 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.111 3.889 26 C -0.064 4.064 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.410 0.590 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.403 0.597 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.253 0.747 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.601 -19.533 -14.405 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.181 4.181 3 C 0.293 3.707 4 O -0.383 6.383 5 N -0.322 5.322 6 C 0.038 3.962 7 C -0.147 4.147 8 C -0.125 4.125 9 C -0.117 4.117 10 C -0.109 4.109 11 C 0.342 3.658 12 O -0.421 6.421 13 N -0.335 5.335 14 C -0.016 4.016 15 C 0.025 3.975 16 N -0.339 5.339 17 C -0.353 4.353 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.564 5.564 21 Si 0.741 3.259 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.016 4.016 26 C -0.085 4.085 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.246 0.754 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.239 0.761 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.668 -19.037 -13.814 23.806 hybrid contribution 1.781 0.410 0.093 1.830 sum -1.887 -18.627 -13.721 23.212 Atomic orbital electron populations 1.21560 0.92610 1.01816 1.03775 1.21639 0.99060 0.92840 1.04557 1.21077 0.81596 0.92495 0.75560 1.90803 1.54856 1.46263 1.46398 1.43562 1.07967 1.07013 1.73667 1.17585 0.95552 0.85065 0.98012 1.21007 0.96739 0.97148 0.99837 1.20878 1.00012 0.92414 0.99232 1.21421 0.93901 1.00261 0.96133 1.19925 0.96411 0.94427 1.00133 1.18141 0.84643 0.82220 0.80830 1.90749 1.24796 1.79138 1.47399 1.45430 1.28112 1.09315 1.50662 1.22881 0.95479 0.88323 0.94956 1.22747 0.92730 0.91031 0.91016 1.46183 1.18116 1.42557 1.27092 1.19049 0.93940 1.14407 1.07868 0.90236 1.24798 0.99076 0.99279 0.97243 1.69848 1.38009 1.33256 1.15300 0.86078 0.83232 0.78993 0.77616 1.20501 1.21787 1.21751 1.22919 0.91658 0.92541 0.94478 1.21211 1.00108 0.91526 0.95656 0.91616 0.91835 0.91864 0.88730 0.88488 0.75381 0.85496 0.84941 0.85018 0.76137 0.89159 0.94613 0.90450 0.93693 0.93455 0.93496 0.83514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.20 37.16 0.34 -0.66 16 2 C -0.14 -0.83 6.42 -27.88 -0.18 -1.01 16 3 C 0.50 5.21 7.57 -10.98 -0.08 5.13 16 4 O -0.51 -7.79 13.67 5.55 0.08 -7.72 16 5 N -0.68 -5.94 5.34 -9.89 -0.05 -5.99 16 6 C 0.13 1.57 6.27 -83.73 -0.53 1.04 16 7 C -0.13 -1.24 9.95 -39.31 -0.39 -1.63 16 8 C -0.11 -1.13 10.02 -39.67 -0.40 -1.52 16 9 C -0.10 -1.29 9.54 -39.16 -0.37 -1.66 16 10 C -0.11 -1.69 5.87 -104.99 -0.62 -2.31 16 11 C 0.56 10.66 7.77 -12.32 -0.10 10.56 16 12 O -0.54 -12.14 15.97 5.32 0.08 -12.05 16 13 N -0.69 -12.83 5.32 -56.29 -0.30 -13.13 16 14 C 0.09 1.82 4.40 -70.15 -0.31 1.51 16 15 C 0.15 3.69 7.33 -2.84 -0.02 3.67 16 16 N -0.61 -15.48 3.70 -177.90 -0.66 -16.14 16 17 C -0.23 -6.20 10.70 -15.06 -0.16 -6.36 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 20 N -0.92 -27.30 11.39 55.49 0.63 -26.67 16 21 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.11 2.24 8.68 -2.97 -0.03 2.21 16 26 C -0.06 -1.00 8.20 -38.98 -0.32 -1.32 16 27 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 29 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.41 1.91 8.82 -40.82 -0.36 1.55 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.61 6.40 -52.48 -0.34 1.27 16 36 H 0.40 6.98 6.77 -40.82 -0.28 6.71 16 37 H 0.09 1.79 7.51 -51.93 -0.39 1.40 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 2.12 7.16 -51.93 -0.37 1.75 16 40 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.15 2.63 6.00 -52.49 -0.32 2.32 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -36.44 363.66 -8.83 -45.27 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -5.82 Total: 6.66 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -3.25 Total: 7.34 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -0.38 Total: -61.93 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.16 Total: -19.77 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.44 -8.83 -45.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030397357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.041 kcal (2) G-P(sol) polarization free energy of solvation -36.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds