Wall clock time and date at job start Tue Mar 31 2020 12:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46863 * 2 1 4 4 O 1.21294 * 119.99666 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99906 * 179.97438 * 3 2 1 6 6 C 1.39954 * 119.99842 * 185.27712 * 5 3 2 7 7 C 1.38995 * 120.00121 * 213.33177 * 6 5 3 8 8 C 1.38211 * 120.22201 * 180.02562 * 7 6 5 9 9 C 1.38016 * 120.22406 * 359.68057 * 8 7 6 10 10 C 1.39576 * 119.99760 * 0.61401 * 9 8 7 11 11 C 1.47858 * 120.11455 * 179.67605 * 10 9 8 12 12 O 1.21553 * 120.00346 * 179.72927 * 11 10 9 13 13 N 1.34777 * 119.99909 * 359.73090 * 11 10 9 14 14 C 1.46501 * 120.00170 * 179.97438 * 13 11 10 15 15 C 1.53945 * 113.73899 * 106.26003 * 14 13 11 16 16 N 1.47805 * 86.03822 * 90.88715 * 15 14 13 17 17 C 1.36942 * 134.45997 * 204.64835 * 16 15 14 18 18 H 1.07996 * 120.00098 * 179.86249 * 17 16 15 19 19 C 1.38808 * 119.99564 * 359.86132 * 17 16 15 20 20 N 1.31624 * 120.00158 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99908 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47013 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47153 * 120.00048 * 21 19 17 24 24 H 1.48503 * 109.47127 * 239.99828 * 21 19 17 25 25 C 1.47581 * 91.05281 * 24.54436 * 16 15 14 26 26 C 1.38600 * 120.00025 * 33.35345 * 6 5 3 27 27 H 1.09001 * 109.47445 * 299.99617 * 1 2 3 28 28 H 1.08998 * 109.47248 * 60.00025 * 1 2 3 29 29 H 1.09007 * 109.46558 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47319 * 240.00858 * 2 1 3 31 31 H 1.08998 * 109.47248 * 119.99975 * 2 1 3 32 32 H 0.96996 * 120.00040 * 5.28057 * 5 3 2 33 33 H 1.07995 * 119.88700 * 359.97438 * 7 6 5 34 34 H 1.07999 * 119.88256 * 179.97438 * 8 7 6 35 35 H 1.08003 * 120.00264 * 180.32013 * 9 8 7 36 36 H 0.97000 * 119.99922 * 359.97438 * 13 11 10 37 37 H 1.09002 * 112.94423 * 334.67023 * 14 13 11 38 38 H 1.09001 * 113.76823 * 205.14841 * 15 14 13 39 39 H 1.08999 * 113.77224 * 336.54278 * 15 14 13 40 40 H 0.97002 * 120.00039 * 180.02562 * 20 19 17 41 41 H 1.08996 * 113.77377 * 221.15107 * 25 16 15 42 42 H 1.09002 * 113.76207 * 89.75625 * 25 16 15 43 43 H 1.07999 * 120.10806 * 0.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2440 2.3427 0.0005 5 7 3.3573 1.6672 0.0005 6 6 3.8247 2.9817 0.1120 7 6 4.9937 3.3611 -0.5371 8 6 5.4597 4.6578 -0.4297 9 6 4.7637 5.5865 0.3174 10 6 3.5920 5.2140 0.9781 11 6 2.8483 6.2050 1.7850 12 8 1.8255 5.8797 2.3555 13 7 3.3045 7.4690 1.8879 14 6 2.5673 8.4510 2.6869 15 6 3.2434 8.7927 4.0271 16 7 3.9266 9.8758 3.2890 17 6 5.0954 10.5674 3.4649 18 1 5.3796 11.3354 2.7608 19 6 5.9146 10.2814 4.5483 20 7 5.5684 9.3451 5.4062 21 14 7.5087 11.2252 4.7888 22 1 7.6663 12.2172 3.6952 23 1 7.4741 11.9305 6.0951 24 1 8.6526 10.2784 4.7676 25 6 2.8451 9.9110 2.2854 26 6 3.1220 3.9051 0.8700 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 3.9870 0.9335 -0.0764 33 1 5.5402 2.6399 -1.1266 34 1 6.3689 4.9466 -0.9360 35 1 5.1283 6.6002 0.3947 36 1 4.1209 7.7285 1.4329 37 1 1.5070 8.2151 2.7779 38 1 2.5514 9.1495 4.7899 39 1 3.9155 8.0155 4.3909 40 1 6.1407 9.1454 6.1635 41 1 3.1999 10.0250 1.2611 42 1 2.0359 10.5970 2.5355 43 1 2.2138 3.6120 1.3757 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030397357.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:58 Heat of formation + Delta-G solvation = -12.978914 kcal Electronic energy + Delta-G solvation = -25737.233177 eV Core-core repulsion = 21976.210305 eV Total energy + Delta-G solvation = -3761.022871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.78318 -41.03699 -39.63957 -38.77318 -35.93994 -35.00298 -33.88795 -33.66552 -32.10410 -30.65533 -29.42897 -26.62913 -25.94093 -25.71576 -24.41848 -23.34162 -21.78571 -21.27124 -20.97791 -19.31535 -18.76885 -18.26746 -17.43694 -17.25826 -16.97731 -16.78392 -16.68987 -16.04240 -15.71545 -15.61558 -15.27364 -15.13290 -14.72011 -14.57071 -14.37941 -14.21887 -13.70765 -13.38009 -13.22449 -13.18753 -12.86773 -12.82721 -12.75190 -12.56320 -12.35234 -12.14774 -12.03638 -11.72563 -11.56077 -11.41269 -11.14741 -10.91867 -10.89058 -10.14830 -9.88216 -9.22097 -8.95707 -7.88602 -5.24306 -0.20874 0.26133 1.46510 1.48059 1.50228 1.58263 1.86154 1.98514 2.17360 2.47253 2.85306 3.25345 3.39874 3.59302 3.72005 3.84138 3.91550 4.07514 4.17926 4.19870 4.26286 4.40970 4.43494 4.47528 4.55898 4.72706 4.76245 4.85437 4.88566 4.97451 5.04396 5.05557 5.19632 5.23752 5.26694 5.31829 5.36775 5.41219 5.47649 5.68172 5.89773 5.92355 6.41235 6.54408 6.89728 7.15209 7.16472 7.60791 8.54352 9.27824 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020512 B = 0.002785 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.723380 B =10052.856158 C =10728.842108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.496 3.504 4 O -0.569 6.569 5 N -0.660 5.660 6 C 0.128 3.872 7 C -0.104 4.104 8 C -0.098 4.098 9 C -0.102 4.102 10 C -0.134 4.134 11 C 0.551 3.449 12 O -0.586 6.586 13 N -0.680 5.680 14 C 0.108 3.892 15 C 0.147 3.853 16 N -0.634 5.634 17 C -0.229 4.229 18 H 0.091 0.909 19 C -0.069 4.069 20 N -0.955 5.955 21 Si 0.980 3.020 22 H -0.261 1.261 23 H -0.298 1.298 24 H -0.292 1.292 25 C 0.121 3.879 26 C -0.090 4.090 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.434 0.566 33 H 0.176 0.824 34 H 0.172 0.828 35 H 0.138 0.862 36 H 0.410 0.590 37 H 0.095 0.905 38 H 0.024 0.976 39 H 0.040 0.960 40 H 0.246 0.754 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 -20.881 -17.408 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.287 3.713 4 O -0.447 6.447 5 N -0.308 5.308 6 C 0.034 3.966 7 C -0.124 4.124 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.138 4.138 11 C 0.340 3.660 12 O -0.468 6.468 13 N -0.330 5.330 14 C 0.001 3.999 15 C 0.020 3.980 16 N -0.361 5.361 17 C -0.357 4.357 18 H 0.109 0.891 19 C -0.262 4.262 20 N -0.604 5.604 21 Si 0.809 3.191 22 H -0.185 1.185 23 H -0.226 1.226 24 H -0.219 1.219 25 C -0.004 4.004 26 C -0.112 4.112 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.274 0.726 33 H 0.193 0.807 34 H 0.190 0.810 35 H 0.156 0.844 36 H 0.248 0.752 37 H 0.112 0.888 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.161 -20.404 -16.871 26.501 hybrid contribution 0.981 0.755 0.967 1.571 sum -0.180 -19.649 -15.904 25.280 Atomic orbital electron populations 1.21582 0.93958 1.02853 1.01639 1.21719 0.97774 0.89990 1.07472 1.22012 0.81543 0.93781 0.73999 1.90794 1.56396 1.48406 1.49106 1.43498 1.08132 1.06595 1.72587 1.17733 0.95869 0.85777 0.97249 1.21522 0.95126 0.97757 0.97997 1.21359 1.00503 0.91999 0.97734 1.21573 0.92978 1.01396 0.96234 1.19723 0.98085 0.93916 1.02028 1.18764 0.84237 0.82594 0.80375 1.90709 1.26858 1.79841 1.49393 1.45357 1.28269 1.09112 1.50257 1.22586 0.95378 0.89226 0.92705 1.22631 0.92239 0.90372 0.92733 1.46445 1.18859 1.42568 1.28259 1.19486 0.94617 1.13966 1.07640 0.89121 1.25670 1.02644 1.00523 0.97390 1.70066 1.39249 1.35223 1.15881 0.84983 0.78977 0.77757 0.77414 1.18496 1.22577 1.21896 1.23048 0.90546 0.92227 0.94556 1.21055 0.99948 0.92593 0.97556 0.94336 0.93532 0.89074 0.84988 0.85919 0.72594 0.80686 0.81047 0.84438 0.75233 0.88755 0.95833 0.94157 0.94504 0.90931 0.91526 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.20 71.98 0.66 -1.32 16 2 C -0.13 -1.25 6.42 29.85 0.19 -1.06 16 3 C 0.50 10.00 7.57 87.66 0.66 10.66 16 4 O -0.57 -18.52 13.67 -3.07 -0.04 -18.56 16 5 N -0.66 -10.23 5.34 -303.58 -1.62 -11.85 16 6 C 0.13 2.87 6.27 38.11 0.24 3.11 16 7 C -0.10 -1.61 9.95 22.44 0.22 -1.38 16 8 C -0.10 -1.69 10.02 22.21 0.22 -1.47 16 9 C -0.10 -2.57 9.54 22.54 0.21 -2.36 16 10 C -0.13 -4.47 5.87 -20.10 -0.12 -4.59 16 11 C 0.55 22.42 7.77 86.79 0.67 23.10 16 12 O -0.59 -28.32 15.97 -3.88 -0.06 -28.39 16 13 N -0.68 -26.21 5.32 -450.27 -2.40 -28.61 16 14 C 0.11 4.47 4.40 46.75 0.21 4.68 16 15 C 0.15 7.50 7.33 86.44 0.63 8.13 16 16 N -0.63 -32.23 3.70 -716.74 -2.65 -34.88 16 17 C -0.23 -12.55 10.70 84.03 0.90 -11.65 16 18 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 20 N -0.96 -58.67 11.39 21.65 0.25 -58.43 16 21 Si 0.98 45.38 29.55 68.60 2.03 47.41 16 22 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 25 C 0.12 4.79 8.68 86.48 0.75 5.54 16 26 C -0.09 -2.95 8.20 22.66 0.19 -2.76 16 27 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 28 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 29 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.13 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.43 2.36 8.82 -92.71 -0.82 1.54 16 33 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.14 3.19 6.40 -2.91 -0.02 3.17 16 36 H 0.41 14.32 6.77 -92.71 -0.63 13.70 16 37 H 0.09 3.87 7.51 -2.39 -0.02 3.85 16 38 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.04 2.34 7.16 -2.39 -0.02 2.32 16 40 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 41 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.11 4.39 6.00 -2.91 -0.02 4.37 16 Total: -1.00 -86.36 363.66 1.22 -85.13 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.39 Total: 23.02 kcal Atomic # 6 Polarization: 19.04 SS G_CDS: 6.12 Total: 25.15 kcal Atomic # 7 Polarization: -127.34 SS G_CDS: -6.43 Total: -133.77 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -0.10 Total: -46.95 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -86.36 1.22 -85.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030397357.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.154 kcal (2) G-P(sol) polarization free energy of solvation -86.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds