Wall clock time and date at job start Tue Mar 31 2020 12:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99772 * 2 1 4 4 O 1.42895 * 109.47066 * 135.00081 * 3 2 1 5 5 C 1.35648 * 116.99980 * 180.02562 * 4 3 2 6 6 C 1.39343 * 120.53964 * 0.02562 * 5 4 3 7 7 C 1.38305 * 118.44077 * 180.02562 * 6 5 4 8 8 C 1.38767 * 119.44384 * 359.97438 * 7 6 5 9 9 N 1.31380 * 121.06528 * 359.97438 * 8 7 6 10 10 C 1.32852 * 121.69705 * 359.74241 * 9 8 7 11 11 C 1.47832 * 119.78575 * 180.26680 * 10 9 8 12 12 O 1.21555 * 120.00171 * 180.26870 * 11 10 9 13 13 N 1.34778 * 119.99950 * 0.27402 * 11 10 9 14 14 C 1.46498 * 120.00208 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47318 * 180.02562 * 14 13 11 16 16 H 1.09005 * 112.73695 * 56.23938 * 15 14 13 17 17 C 1.53494 * 113.46773 * 187.05518 * 15 14 13 18 18 C 1.53503 * 83.34101 * 140.84642 * 17 15 14 19 19 N 1.47060 * 113.46522 * 285.49503 * 15 14 13 20 20 C 1.36941 * 136.06090 * 38.06059 * 19 15 14 21 21 H 1.07999 * 119.99802 * 353.57267 * 20 19 15 22 22 C 1.38811 * 120.00096 * 173.56436 * 20 19 15 23 23 N 1.31623 * 120.00124 * 5.05809 * 22 20 19 24 24 Si 1.86804 * 120.00124 * 185.05918 * 22 20 19 25 25 H 1.48497 * 109.47086 * 94.98472 * 24 22 20 26 26 H 1.48502 * 109.47153 * 214.99063 * 24 22 20 27 27 H 1.48502 * 109.46705 * 334.98710 * 24 22 20 28 28 H 1.08000 * 120.00550 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.00198 * 179.97438 * 1 2 3 30 30 H 1.07991 * 119.99961 * 180.02562 * 2 1 3 31 31 H 1.09008 * 109.46989 * 14.99842 * 3 2 1 32 32 H 1.09000 * 109.47262 * 255.00324 * 3 2 1 33 33 H 1.07996 * 120.78362 * 0.02562 * 6 5 4 34 34 H 1.07995 * 120.28092 * 179.97438 * 7 6 5 35 35 H 1.07997 * 119.46473 * 180.02562 * 8 7 6 36 36 H 0.97006 * 120.00249 * 359.97438 * 13 11 10 37 37 H 1.09006 * 109.46931 * 299.99887 * 14 13 11 38 38 H 1.08997 * 109.47572 * 59.99545 * 14 13 11 39 39 H 1.08994 * 114.20834 * 254.43416 * 17 15 14 40 40 H 1.09000 * 114.20610 * 27.26742 * 17 15 14 41 41 H 1.08997 * 113.46573 * 219.15358 * 18 17 15 42 42 H 1.08995 * 113.46383 * 88.71655 * 18 17 15 43 43 H 0.96994 * 119.99825 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1266 1.2414 0.9526 5 6 3.9075 2.3434 1.0787 6 6 3.6646 3.4757 0.3037 7 6 4.4880 4.5748 0.4673 8 6 5.5230 4.5205 1.3900 9 7 5.7328 3.4422 2.1108 10 6 4.9656 2.3640 1.9934 11 6 5.2362 1.1756 2.8300 12 8 4.5398 0.1852 2.7224 13 7 6.2550 1.1903 3.7122 14 6 6.5229 0.0129 4.5417 15 6 7.7226 0.2908 5.4497 16 1 7.5855 1.1770 6.0695 17 6 8.1918 -0.9406 6.2367 18 6 9.5886 -0.3834 5.9286 19 7 9.0113 0.2650 4.7416 20 6 9.4712 0.6670 3.5160 21 1 8.7790 1.0383 2.7747 22 6 10.8270 0.5975 3.2265 23 7 11.6575 0.0536 4.0907 24 14 11.4730 1.2761 1.6103 25 1 11.9488 2.6681 1.8128 26 1 12.5984 0.4325 1.1338 27 1 10.3850 1.2669 0.5996 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8499 -0.9352 -0.0004 31 1 1.3854 2.1162 0.2660 32 1 2.4754 1.4869 -0.9927 33 1 2.8525 3.4946 -0.4079 34 1 4.3269 5.4679 -0.1182 35 1 6.1659 5.3787 1.5183 36 1 6.8110 1.9806 3.7980 37 1 5.6480 -0.2072 5.1535 38 1 6.7420 -0.8410 3.9007 39 1 7.9268 -0.9231 7.2938 40 1 7.9730 -1.8915 5.7510 41 1 10.3205 -1.1548 5.6891 42 1 9.9490 0.3225 6.6768 43 1 12.6048 0.0047 3.8881 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038904634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:22 Heat of formation + Delta-G solvation = 51.353375 kcal Electronic energy + Delta-G solvation = -26186.286295 eV Core-core repulsion = 22428.053081 eV Total energy + Delta-G solvation = -3758.233214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96337 -38.98404 -38.42668 -37.83084 -34.45006 -33.85470 -32.50148 -32.10878 -30.69078 -28.03286 -27.61396 -26.94080 -24.54262 -23.39618 -23.03581 -21.90659 -20.59012 -20.05433 -19.23483 -18.45789 -17.70046 -17.17515 -16.47830 -16.36460 -15.48345 -15.31834 -15.21850 -14.91414 -14.57827 -14.37421 -14.03157 -13.69574 -13.61671 -13.32086 -13.04459 -12.96395 -12.73638 -12.19301 -11.79543 -11.78288 -11.48009 -11.31031 -11.01794 -10.90951 -10.72594 -10.49718 -10.08405 -10.00099 -9.93372 -9.81940 -9.77422 -9.48723 -9.09400 -8.74847 -8.62635 -8.32756 -6.81595 -5.71655 -3.02538 0.61689 1.08762 1.75127 3.00444 3.04641 3.42872 3.48414 3.50218 3.52476 3.93923 4.26627 4.35607 4.48292 4.53492 4.58092 4.70975 4.84663 4.87543 5.04131 5.11025 5.26199 5.40446 5.47335 5.51738 5.62611 5.71708 5.76968 5.85802 6.00463 6.16394 6.19550 6.23501 6.31540 6.39384 6.47515 6.66593 6.81297 7.02466 7.06131 7.30954 7.45062 7.65253 7.67339 8.04194 8.12029 8.69555 9.10820 9.77050 10.70415 11.46363 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013103 B = 0.003707 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.423139 B = 7552.258615 C = 8590.406122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.147 4.147 3 C 0.078 3.922 4 O -0.265 6.265 5 C 0.135 3.865 6 C -0.179 4.179 7 C -0.112 4.112 8 C 0.059 3.941 9 N -0.414 5.414 10 C 0.053 3.947 11 C 0.565 3.435 12 O -0.528 6.528 13 N -0.695 5.695 14 C 0.121 3.879 15 C 0.127 3.873 16 H 0.049 0.951 17 C -0.162 4.162 18 C 0.154 3.846 19 N -0.601 5.601 20 C -0.210 4.210 21 H 0.082 0.918 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.906 3.094 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.281 1.281 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.165 0.835 36 H 0.413 0.587 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.026 0.974 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.964 7.077 -6.391 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.165 4.165 3 C 0.002 3.998 4 O -0.175 6.175 5 C 0.084 3.916 6 C -0.206 4.206 7 C -0.132 4.132 8 C -0.102 4.102 9 N -0.125 5.125 10 C -0.086 4.086 11 C 0.349 3.651 12 O -0.404 6.404 13 N -0.345 5.345 14 C -0.003 4.003 15 C 0.019 3.981 16 H 0.066 0.934 17 C -0.201 4.201 18 C 0.029 3.971 19 N -0.326 5.326 20 C -0.337 4.337 21 H 0.100 0.900 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.736 3.264 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.207 1.207 28 H 0.116 0.884 29 H 0.126 0.874 30 H 0.142 0.858 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.183 0.817 36 H 0.249 0.751 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.044 0.956 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.508 6.138 -6.009 21.315 hybrid contribution 0.033 1.228 -1.727 2.119 sum -19.475 7.366 -7.736 22.212 Atomic orbital electron populations 1.23839 0.95314 1.02447 0.99657 1.22652 0.95579 0.97889 1.00424 1.21971 0.88170 0.97287 0.92332 1.86461 1.40726 1.33376 1.56949 1.20011 0.90961 0.86847 0.93761 1.21707 1.03051 0.93504 1.02314 1.22182 0.94639 0.98536 0.97806 1.22748 0.97281 0.96334 0.93806 1.67698 1.23938 0.98828 1.22076 1.20882 0.93855 0.95155 0.98738 1.17589 0.81479 0.85809 0.80272 1.90797 1.48921 1.32777 1.67908 1.45806 1.31308 1.18902 1.38490 1.21839 0.97404 0.87994 0.93068 1.22419 0.87456 0.96178 0.92034 0.93377 1.23678 1.00633 0.97715 0.98034 1.21969 0.92889 0.94724 0.87536 1.45676 1.04992 1.70290 1.11681 1.18921 0.91056 1.35970 0.87747 0.89988 1.24791 0.95799 1.01573 0.98241 1.69851 1.02724 1.48461 1.35525 0.86184 0.78509 0.78568 0.83128 1.21640 1.21815 1.20652 0.88424 0.87371 0.85836 0.91481 0.90946 0.83893 0.84063 0.81748 0.75115 0.92187 0.91056 0.92339 0.90220 0.91405 0.95607 0.93787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 14.31 29.01 0.42 -0.90 16 2 C -0.15 -1.42 9.89 -36.02 -0.36 -1.78 16 3 C 0.08 0.77 5.17 36.01 0.19 0.95 16 4 O -0.27 -3.94 8.18 -40.59 -0.33 -4.28 16 5 C 0.14 1.96 6.71 -38.55 -0.26 1.70 16 6 C -0.18 -1.86 9.13 -39.15 -0.36 -2.22 16 7 C -0.11 -1.04 10.10 -39.36 -0.40 -1.44 16 8 C 0.06 0.69 11.17 -17.55 -0.20 0.49 16 9 N -0.41 -6.50 9.54 -9.71 -0.09 -6.59 16 10 C 0.05 0.90 6.76 -82.88 -0.56 0.34 16 11 C 0.56 11.11 7.80 -12.33 -0.10 11.01 16 12 O -0.53 -11.46 15.14 -16.63 -0.25 -11.71 16 13 N -0.69 -13.54 5.32 -61.25 -0.33 -13.87 16 14 C 0.12 2.36 5.52 -4.04 -0.02 2.34 16 15 C 0.13 2.57 4.10 -72.40 -0.30 2.28 16 16 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 17 C -0.16 -3.04 8.03 -26.22 -0.21 -3.25 16 18 C 0.15 3.63 7.31 -8.51 -0.06 3.57 16 19 N -0.60 -15.19 3.65 -177.01 -0.65 -15.84 16 20 C -0.21 -5.85 10.54 -15.06 -0.16 -6.01 16 21 H 0.08 2.26 7.61 -52.49 -0.40 1.86 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.58 11.62 55.49 0.65 -26.94 16 24 Si 0.91 22.69 29.56 -169.99 -5.02 17.67 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 28 H 0.10 0.59 7.90 -52.49 -0.41 0.18 16 29 H 0.11 0.68 8.06 -52.49 -0.42 0.26 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.07 0.52 7.41 -51.92 -0.38 0.14 16 32 H 0.07 0.59 7.70 -51.93 -0.40 0.19 16 33 H 0.14 1.01 6.46 -52.49 -0.34 0.67 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 35 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 36 H 0.41 8.09 7.80 -40.82 -0.32 7.78 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.48 8.12 -51.93 -0.42 1.06 16 41 H 0.07 1.77 7.31 -51.93 -0.38 1.39 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 367.95 15.07 5.54 5.54 Total: -1.00 -34.80 367.95 -8.95 -43.75 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.00 Total: 5.49 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -2.47 Total: 6.78 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: -0.42 Total: -63.24 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.58 Total: -15.99 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.80 -8.95 -43.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038904634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.099 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds