Wall clock time and date at job start Tue Mar 31 2020 12:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99772 * 2 1 4 4 O 1.42895 * 109.47066 * 135.00081 * 3 2 1 5 5 C 1.35648 * 116.99980 * 180.02562 * 4 3 2 6 6 C 1.39343 * 120.53964 * 0.02562 * 5 4 3 7 7 C 1.38305 * 118.44077 * 180.02562 * 6 5 4 8 8 C 1.38767 * 119.44384 * 359.97438 * 7 6 5 9 9 N 1.31380 * 121.06528 * 359.97438 * 8 7 6 10 10 C 1.32852 * 121.69705 * 359.74241 * 9 8 7 11 11 C 1.47832 * 119.78575 * 180.26680 * 10 9 8 12 12 O 1.21555 * 120.00171 * 180.26870 * 11 10 9 13 13 N 1.34778 * 119.99950 * 0.27402 * 11 10 9 14 14 C 1.46498 * 120.00208 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47318 * 180.02562 * 14 13 11 16 16 H 1.09005 * 112.73695 * 56.23938 * 15 14 13 17 17 C 1.53494 * 113.46773 * 187.05518 * 15 14 13 18 18 C 1.53503 * 83.34101 * 140.84642 * 17 15 14 19 19 N 1.47060 * 113.46522 * 285.49503 * 15 14 13 20 20 C 1.36941 * 136.06090 * 38.06059 * 19 15 14 21 21 H 1.07999 * 119.99802 * 353.57267 * 20 19 15 22 22 C 1.38811 * 120.00096 * 173.56436 * 20 19 15 23 23 N 1.31623 * 120.00124 * 5.05809 * 22 20 19 24 24 Si 1.86804 * 120.00124 * 185.05918 * 22 20 19 25 25 H 1.48497 * 109.47086 * 94.98472 * 24 22 20 26 26 H 1.48502 * 109.47153 * 214.99063 * 24 22 20 27 27 H 1.48502 * 109.46705 * 334.98710 * 24 22 20 28 28 H 1.08000 * 120.00550 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.00198 * 179.97438 * 1 2 3 30 30 H 1.07991 * 119.99961 * 180.02562 * 2 1 3 31 31 H 1.09008 * 109.46989 * 14.99842 * 3 2 1 32 32 H 1.09000 * 109.47262 * 255.00324 * 3 2 1 33 33 H 1.07996 * 120.78362 * 0.02562 * 6 5 4 34 34 H 1.07995 * 120.28092 * 179.97438 * 7 6 5 35 35 H 1.07997 * 119.46473 * 180.02562 * 8 7 6 36 36 H 0.97006 * 120.00249 * 359.97438 * 13 11 10 37 37 H 1.09006 * 109.46931 * 299.99887 * 14 13 11 38 38 H 1.08997 * 109.47572 * 59.99545 * 14 13 11 39 39 H 1.08994 * 114.20834 * 254.43416 * 17 15 14 40 40 H 1.09000 * 114.20610 * 27.26742 * 17 15 14 41 41 H 1.08997 * 113.46573 * 219.15358 * 18 17 15 42 42 H 1.08995 * 113.46383 * 88.71655 * 18 17 15 43 43 H 0.96994 * 119.99825 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1266 1.2414 0.9526 5 6 3.9075 2.3434 1.0787 6 6 3.6646 3.4757 0.3037 7 6 4.4880 4.5748 0.4673 8 6 5.5230 4.5205 1.3900 9 7 5.7328 3.4422 2.1108 10 6 4.9656 2.3640 1.9934 11 6 5.2362 1.1756 2.8300 12 8 4.5398 0.1852 2.7224 13 7 6.2550 1.1903 3.7122 14 6 6.5229 0.0129 4.5417 15 6 7.7226 0.2908 5.4497 16 1 7.5855 1.1770 6.0695 17 6 8.1918 -0.9406 6.2367 18 6 9.5886 -0.3834 5.9286 19 7 9.0113 0.2650 4.7416 20 6 9.4712 0.6670 3.5160 21 1 8.7790 1.0383 2.7747 22 6 10.8270 0.5975 3.2265 23 7 11.6575 0.0536 4.0907 24 14 11.4730 1.2761 1.6103 25 1 11.9488 2.6681 1.8128 26 1 12.5984 0.4325 1.1338 27 1 10.3850 1.2669 0.5996 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8499 -0.9352 -0.0004 31 1 1.3854 2.1162 0.2660 32 1 2.4754 1.4869 -0.9927 33 1 2.8525 3.4946 -0.4079 34 1 4.3269 5.4679 -0.1182 35 1 6.1659 5.3787 1.5183 36 1 6.8110 1.9806 3.7980 37 1 5.6480 -0.2072 5.1535 38 1 6.7420 -0.8410 3.9007 39 1 7.9268 -0.9231 7.2938 40 1 7.9730 -1.8915 5.7510 41 1 10.3205 -1.1548 5.6891 42 1 9.9490 0.3225 6.6768 43 1 12.6048 0.0047 3.8881 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038904634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:22 Heat of formation + Delta-G solvation = 27.679810 kcal Electronic energy + Delta-G solvation = -26187.312858 eV Core-core repulsion = 22428.053081 eV Total energy + Delta-G solvation = -3759.259777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.97666 -40.47127 -39.58519 -39.29322 -35.52526 -35.04567 -34.25734 -33.39244 -31.67673 -29.97071 -29.21150 -27.70215 -25.68607 -25.39065 -23.97041 -23.43926 -21.84723 -21.08443 -20.83211 -19.54613 -18.95522 -18.27536 -18.14508 -17.29364 -17.07427 -16.75816 -16.39588 -16.19488 -15.88329 -15.65026 -15.38350 -15.14014 -14.89450 -14.58891 -14.35475 -14.09638 -13.72594 -13.59761 -13.34589 -13.05169 -12.94917 -12.70652 -12.60141 -12.57363 -12.31486 -11.99517 -11.87384 -11.65504 -11.35753 -11.03182 -10.86105 -10.85229 -10.63357 -10.41364 -10.02547 -9.49439 -8.87435 -7.89013 -5.19351 -0.36735 0.20976 1.08380 1.41755 1.43101 1.51763 1.76770 2.15113 2.26098 2.47297 2.82733 3.21010 3.32486 3.46627 3.56838 3.67278 3.89089 3.92235 4.00745 4.04959 4.11256 4.17735 4.28506 4.33795 4.47305 4.48346 4.63106 4.69098 4.84567 4.90245 4.93060 4.98261 5.05309 5.09132 5.33702 5.39815 5.48071 5.58965 5.59073 5.64580 5.73556 5.97084 6.20898 6.49094 6.83250 6.95264 7.22878 7.63630 8.64374 9.29287 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013103 B = 0.003707 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.423139 B = 7552.258615 C = 8590.406122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.183 4.183 3 C 0.072 3.928 4 O -0.301 6.301 5 C 0.126 3.874 6 C -0.171 4.171 7 C -0.084 4.084 8 C 0.050 3.950 9 N -0.446 5.446 10 C 0.003 3.997 11 C 0.559 3.441 12 O -0.561 6.561 13 N -0.698 5.698 14 C 0.130 3.870 15 C 0.132 3.868 16 H 0.066 0.934 17 C -0.132 4.132 18 C 0.148 3.852 19 N -0.629 5.629 20 C -0.206 4.206 21 H 0.078 0.922 22 C -0.068 4.068 23 N -0.952 5.952 24 Si 0.967 3.033 25 H -0.283 1.283 26 H -0.295 1.295 27 H -0.277 1.277 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.183 0.817 34 H 0.193 0.807 35 H 0.192 0.808 36 H 0.411 0.589 37 H 0.080 0.920 38 H 0.042 0.958 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.024 0.976 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.509 9.601 -7.755 25.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.201 4.201 3 C -0.002 4.002 4 O -0.212 6.212 5 C 0.075 3.925 6 C -0.197 4.197 7 C -0.104 4.104 8 C -0.113 4.113 9 N -0.158 5.158 10 C -0.133 4.133 11 C 0.345 3.655 12 O -0.441 6.441 13 N -0.348 5.348 14 C 0.006 3.994 15 C 0.025 3.975 16 H 0.083 0.917 17 C -0.171 4.171 18 C 0.022 3.978 19 N -0.355 5.355 20 C -0.334 4.334 21 H 0.096 0.904 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.797 3.203 25 H -0.210 1.210 26 H -0.222 1.222 27 H -0.202 1.202 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.120 0.880 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.200 0.800 34 H 0.210 0.790 35 H 0.209 0.791 36 H 0.247 0.753 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.052 0.948 42 H 0.041 0.959 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.093 8.653 -7.356 24.841 hybrid contribution 0.670 0.518 -1.350 1.593 sum -21.423 9.171 -8.706 24.877 Atomic orbital electron populations 1.24099 0.94478 1.03983 0.96317 1.22647 0.96492 0.97363 1.03591 1.22266 0.87571 0.98084 0.92259 1.86416 1.41949 1.34337 1.58476 1.20192 0.90390 0.88068 0.93862 1.22177 1.03877 0.91987 1.01621 1.22735 0.92135 0.99532 0.95966 1.23410 0.98421 0.95819 0.93618 1.67577 1.24700 0.99648 1.23863 1.20473 0.96724 0.95067 1.01039 1.18150 0.80657 0.86648 0.80048 1.90748 1.49967 1.34359 1.68978 1.45819 1.31551 1.18567 1.38897 1.21659 0.97814 0.87274 0.92700 1.22569 0.85678 0.97465 0.91773 0.91679 1.23495 0.96288 0.96836 1.00449 1.21989 0.94681 0.94037 0.87088 1.45983 1.07387 1.70537 1.11613 1.19139 0.91077 1.34220 0.89000 0.90396 1.25532 0.96250 1.02824 1.01511 1.70018 1.02460 1.50338 1.37288 0.85214 0.77580 0.77874 0.79679 1.20997 1.22197 1.20249 0.86251 0.86373 0.88035 0.88928 0.89313 0.80019 0.79006 0.79073 0.75349 0.90156 0.93912 0.87977 0.90072 0.94769 0.95851 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 14.31 67.78 0.97 -1.01 16 2 C -0.18 -3.45 9.89 25.65 0.25 -3.19 16 3 C 0.07 1.32 5.17 71.24 0.37 1.69 16 4 O -0.30 -8.99 8.18 -68.64 -0.56 -9.55 16 5 C 0.13 3.55 6.71 22.94 0.15 3.71 16 6 C -0.17 -2.93 9.13 22.55 0.21 -2.72 16 7 C -0.08 -1.18 10.10 22.41 0.23 -0.95 16 8 C 0.05 1.03 11.17 84.89 0.95 1.97 16 9 N -0.45 -13.86 9.54 -184.63 -1.76 -15.62 16 10 C 0.00 0.12 6.76 41.93 0.28 0.40 16 11 C 0.56 22.96 7.80 86.78 0.68 23.64 16 12 O -0.56 -25.68 15.14 17.10 0.26 -25.42 16 13 N -0.70 -28.16 5.32 -465.98 -2.48 -30.64 16 14 C 0.13 5.16 5.52 86.38 0.48 5.63 16 15 C 0.13 5.30 4.10 41.79 0.17 5.47 16 16 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 17 C -0.13 -4.81 8.03 30.93 0.25 -4.56 16 18 C 0.15 7.06 7.31 83.18 0.61 7.67 16 19 N -0.63 -32.46 3.65 -713.94 -2.60 -35.07 16 20 C -0.21 -11.79 10.54 84.03 0.89 -10.91 16 21 H 0.08 4.43 7.61 -2.91 -0.02 4.40 16 22 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 23 N -0.95 -58.99 11.62 21.65 0.25 -58.73 16 24 Si 0.97 47.81 29.56 68.60 2.03 49.84 16 25 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 27 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 28 H 0.12 1.03 7.90 -2.91 -0.02 1.01 16 29 H 0.12 1.26 8.06 -2.91 -0.02 1.24 16 30 H 0.10 2.29 8.06 -2.92 -0.02 2.26 16 31 H 0.09 1.15 7.41 -2.38 -0.02 1.13 16 32 H 0.09 1.25 7.70 -2.39 -0.02 1.23 16 33 H 0.18 1.61 6.46 -2.91 -0.02 1.59 16 34 H 0.19 0.78 8.06 -2.91 -0.02 0.75 16 35 H 0.19 2.72 8.06 -2.91 -0.02 2.69 16 36 H 0.41 16.66 7.80 -92.70 -0.72 15.94 16 37 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 38 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.08 2.95 8.12 -2.39 -0.02 2.93 16 41 H 0.03 1.84 7.31 -2.39 -0.02 1.83 16 42 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -81.44 367.95 2.38 -79.06 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.30 Total: 22.86 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: 6.94 Total: 23.27 kcal Atomic # 7 Polarization: -133.47 SS G_CDS: -6.59 Total: -140.06 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.30 Total: -34.97 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -81.44 2.38 -79.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038904634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.739 kcal (2) G-P(sol) polarization free energy of solvation -81.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds