Wall clock time and date at job start Tue Mar 31 2020 12:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50706 * 119.99672 * 2 1 4 4 O 1.42909 * 109.46911 * 134.99727 * 3 2 1 5 5 C 1.35650 * 116.99659 * 179.97438 * 4 3 2 6 6 C 1.39344 * 120.53985 * 359.97438 * 5 4 3 7 7 C 1.38299 * 118.43579 * 179.74808 * 6 5 4 8 8 C 1.38771 * 119.44702 * 0.55611 * 7 6 5 9 9 N 1.31378 * 121.06237 * 359.42467 * 8 7 6 10 10 C 1.32855 * 121.69858 * 0.27999 * 9 8 7 11 11 C 1.47823 * 119.78570 * 180.02562 * 10 9 8 12 12 O 1.21563 * 120.00090 * 180.02562 * 11 10 9 13 13 N 1.34782 * 120.00141 * 359.97438 * 11 10 9 14 14 C 1.46495 * 120.00109 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47225 * 180.02562 * 14 13 11 16 16 H 1.08997 * 112.96233 * 306.68641 * 15 14 13 17 17 C 1.53940 * 113.77094 * 174.99757 * 15 14 13 18 18 C 1.53943 * 86.29205 * 222.09298 * 17 15 14 19 19 N 1.47581 * 86.11563 * 23.61098 * 18 17 15 20 20 C 1.36937 * 134.49435 * 155.35684 * 19 18 17 21 21 H 1.08002 * 120.00128 * 179.97438 * 20 19 18 22 22 C 1.38818 * 120.00011 * 0.02562 * 20 19 18 23 23 N 1.31616 * 119.99558 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99909 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47174 * 89.99917 * 24 22 20 26 26 H 1.48505 * 109.46796 * 209.99407 * 24 22 20 27 27 H 1.48499 * 109.47401 * 329.99434 * 24 22 20 28 28 H 1.08000 * 119.99935 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99596 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00419 * 179.97438 * 2 1 3 31 31 H 1.08993 * 109.47464 * 15.00087 * 3 2 1 32 32 H 1.08998 * 109.47006 * 254.99648 * 3 2 1 33 33 H 1.07995 * 120.78402 * 0.03897 * 6 5 4 34 34 H 1.08000 * 120.27830 * 180.27765 * 7 6 5 35 35 H 1.08002 * 119.47198 * 179.70885 * 8 7 6 36 36 H 0.96993 * 119.99446 * 0.02562 * 13 11 10 37 37 H 1.09001 * 109.47451 * 300.00268 * 14 13 11 38 38 H 1.09002 * 109.47195 * 60.00681 * 14 13 11 39 39 H 1.09000 * 113.74460 * 336.44611 * 17 15 14 40 40 H 1.09005 * 113.73956 * 107.64096 * 17 15 14 41 41 H 1.08998 * 113.76641 * 137.90872 * 18 17 15 42 42 H 1.08994 * 113.77023 * 269.19570 * 18 17 15 43 43 H 0.97004 * 120.00005 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9528 5 6 3.9082 2.3431 1.0781 6 6 3.6666 3.4746 0.3016 7 6 4.4870 4.5754 0.4686 8 6 5.5254 4.5192 1.3875 9 7 5.7345 3.4414 2.1091 10 6 4.9699 2.3615 1.9887 11 6 5.2429 1.1718 2.8225 12 8 4.5461 0.1815 2.7152 13 7 6.2650 1.1847 3.7010 14 6 6.5359 0.0054 4.5269 15 6 7.7390 0.2814 5.4310 16 1 8.6153 0.6231 4.8802 17 6 8.0367 -0.8509 6.4305 18 6 8.2790 0.2622 7.4660 19 7 7.4181 1.1046 6.6131 20 6 6.6359 2.2072 6.8311 21 1 6.0879 2.6509 6.0130 22 6 6.5482 2.7555 8.1035 23 7 7.2164 2.2151 9.1003 24 14 5.4817 4.2600 8.4006 25 1 4.1072 3.8289 8.7616 26 1 6.0562 5.0625 9.5103 27 1 5.4339 5.0845 7.1665 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3856 2.1161 0.2660 32 1 2.4756 1.4868 -0.9926 33 1 2.8549 3.4933 -0.4105 34 1 4.3238 5.4697 -0.1145 35 1 6.1692 5.3769 1.5149 36 1 6.8212 1.9747 3.7863 37 1 5.6633 -0.2161 5.1414 38 1 6.7528 -0.8470 3.8831 39 1 7.1733 -1.4777 6.6536 40 1 8.9289 -1.4278 6.1870 41 1 7.8530 0.0501 8.4466 42 1 9.3147 0.5981 7.5157 43 1 7.1549 2.5979 9.9895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038904635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:27 Heat of formation + Delta-G solvation = 48.193791 kcal Electronic energy + Delta-G solvation = -26157.166768 eV Core-core repulsion = 22398.796544 eV Total energy + Delta-G solvation = -3758.370224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97182 -38.94445 -38.40882 -37.69242 -34.44575 -33.86688 -32.51185 -32.05718 -30.69898 -27.99369 -27.61477 -26.94672 -24.57469 -23.28040 -23.05125 -22.03348 -20.60509 -20.06071 -19.12839 -18.45164 -17.70262 -17.18245 -16.47431 -16.37449 -15.48301 -15.36972 -15.14384 -14.93435 -14.57272 -14.41635 -13.98116 -13.76640 -13.56828 -13.33078 -13.06166 -12.97266 -12.75125 -12.19821 -11.78551 -11.76769 -11.34573 -11.30912 -11.01952 -10.93578 -10.68424 -10.46407 -10.09945 -10.00899 -9.93260 -9.81288 -9.67632 -9.52424 -9.21638 -8.71832 -8.64078 -8.34534 -6.80826 -5.68186 -2.99825 0.60635 1.07690 1.75695 2.99435 3.04397 3.44050 3.48944 3.50457 3.51586 3.92937 4.25425 4.35073 4.48151 4.53830 4.57979 4.72084 4.83289 4.85584 5.03442 5.11885 5.20768 5.39545 5.48646 5.52306 5.67223 5.72726 5.75997 5.84592 6.01568 6.15666 6.18942 6.23739 6.31805 6.39696 6.48089 6.70375 6.81251 7.01755 7.05437 7.33561 7.49352 7.65736 7.68189 8.07358 8.10305 8.68360 9.13991 9.79884 10.67910 11.48781 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.003653 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.227351 B = 7663.338148 C = 8360.901293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.149 4.149 3 C 0.078 3.922 4 O -0.265 6.265 5 C 0.135 3.865 6 C -0.179 4.179 7 C -0.111 4.111 8 C 0.059 3.941 9 N -0.415 5.415 10 C 0.053 3.947 11 C 0.565 3.435 12 O -0.527 6.527 13 N -0.695 5.695 14 C 0.123 3.877 15 C 0.126 3.874 16 H 0.050 0.950 17 C -0.156 4.156 18 C 0.159 3.841 19 N -0.602 5.602 20 C -0.214 4.214 21 H 0.080 0.920 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.165 0.835 36 H 0.411 0.589 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.026 0.974 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.125 0.547 -21.048 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.167 4.167 3 C 0.003 3.997 4 O -0.175 6.175 5 C 0.084 3.916 6 C -0.206 4.206 7 C -0.132 4.132 8 C -0.102 4.102 9 N -0.126 5.126 10 C -0.086 4.086 11 C 0.349 3.651 12 O -0.403 6.403 13 N -0.346 5.346 14 C -0.001 4.001 15 C 0.019 3.981 16 H 0.068 0.932 17 C -0.195 4.195 18 C 0.034 3.966 19 N -0.328 5.328 20 C -0.341 4.341 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.141 0.859 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.182 0.818 36 H 0.247 0.753 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.044 0.956 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.080 -0.182 -20.177 21.384 hybrid contribution -1.054 1.751 -0.547 2.116 sum -8.134 1.569 -20.725 22.319 Atomic orbital electron populations 1.23855 0.95346 1.02502 0.99381 1.22635 0.95585 0.97805 1.00670 1.21971 0.88214 0.97375 0.92176 1.86467 1.40672 1.33391 1.56977 1.20012 0.90844 0.86934 0.93765 1.21709 1.03019 0.93496 1.02340 1.22182 0.94573 0.98434 0.97964 1.22744 0.97465 0.96356 0.93617 1.67692 1.25030 0.98843 1.21044 1.20876 0.94096 0.95076 0.98594 1.17584 0.81377 0.85829 0.80337 1.90802 1.48329 1.32960 1.68208 1.45797 1.31668 1.18866 1.38223 1.21795 0.99590 0.86553 0.92194 1.22505 0.93815 0.91663 0.90155 0.93238 1.23774 1.00270 0.96799 0.98609 1.22189 0.93186 0.85598 0.95652 1.46084 1.50985 1.32380 1.03336 1.18999 1.18446 1.02529 0.94159 0.90240 1.24731 1.00405 0.99499 0.95834 1.69821 1.45118 1.41951 1.00054 0.86205 0.79987 0.82708 0.77436 1.21722 1.21737 1.20717 0.88382 0.87350 0.85885 0.91445 0.90999 0.83882 0.84060 0.81760 0.75252 0.90876 0.92087 0.90517 0.92831 0.90855 0.95616 0.93827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 14.31 29.01 0.42 -0.94 16 2 C -0.15 -1.44 9.89 -36.02 -0.36 -1.79 16 3 C 0.08 0.77 5.17 36.01 0.19 0.95 16 4 O -0.27 -3.93 8.18 -40.60 -0.33 -4.26 16 5 C 0.14 1.95 6.71 -38.55 -0.26 1.69 16 6 C -0.18 -1.84 9.13 -39.15 -0.36 -2.20 16 7 C -0.11 -1.02 10.10 -39.36 -0.40 -1.42 16 8 C 0.06 0.68 11.17 -17.55 -0.20 0.48 16 9 N -0.41 -6.43 9.54 -9.71 -0.09 -6.52 16 10 C 0.05 0.89 6.76 -82.89 -0.56 0.33 16 11 C 0.56 11.04 7.80 -12.34 -0.10 10.95 16 12 O -0.53 -11.42 15.14 -16.64 -0.25 -11.67 16 13 N -0.70 -13.43 5.52 -61.25 -0.34 -13.77 16 14 C 0.12 2.40 5.54 -4.04 -0.02 2.37 16 15 C 0.13 2.56 4.33 -66.86 -0.29 2.27 16 16 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.16 -2.95 7.86 -25.81 -0.20 -3.15 16 18 C 0.16 3.76 7.51 -2.98 -0.02 3.73 16 19 N -0.60 -15.25 3.57 -170.76 -0.61 -15.86 16 20 C -0.21 -5.99 10.51 -15.06 -0.16 -6.15 16 21 H 0.08 2.20 7.80 -52.49 -0.41 1.79 16 22 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 23 N -0.92 -27.70 11.38 55.49 0.63 -27.06 16 24 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 28 H 0.10 0.64 7.90 -52.49 -0.41 0.22 16 29 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.07 0.56 7.42 -51.93 -0.39 0.17 16 32 H 0.07 0.55 7.69 -51.93 -0.40 0.15 16 33 H 0.14 1.00 6.46 -52.49 -0.34 0.66 16 34 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.41 7.93 7.80 -40.82 -0.32 7.62 16 37 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.92 7.15 -51.93 -0.37 1.55 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -34.89 368.09 -8.88 -43.77 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.00 Total: 5.21 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: -2.41 Total: 6.79 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: -0.41 Total: -63.21 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.58 Total: -15.93 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.89 -8.88 -43.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038904635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.968 kcal (2) G-P(sol) polarization free energy of solvation -34.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds