Wall clock time and date at job start Tue Mar 31 2020 12:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50706 * 119.99672 * 2 1 4 4 O 1.42909 * 109.46911 * 134.99727 * 3 2 1 5 5 C 1.35650 * 116.99659 * 179.97438 * 4 3 2 6 6 C 1.39344 * 120.53985 * 359.97438 * 5 4 3 7 7 C 1.38299 * 118.43579 * 179.74808 * 6 5 4 8 8 C 1.38771 * 119.44702 * 0.55611 * 7 6 5 9 9 N 1.31378 * 121.06237 * 359.42467 * 8 7 6 10 10 C 1.32855 * 121.69858 * 0.27999 * 9 8 7 11 11 C 1.47823 * 119.78570 * 180.02562 * 10 9 8 12 12 O 1.21563 * 120.00090 * 180.02562 * 11 10 9 13 13 N 1.34782 * 120.00141 * 359.97438 * 11 10 9 14 14 C 1.46495 * 120.00109 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47225 * 180.02562 * 14 13 11 16 16 H 1.08997 * 112.96233 * 306.68641 * 15 14 13 17 17 C 1.53940 * 113.77094 * 174.99757 * 15 14 13 18 18 C 1.53943 * 86.29205 * 222.09298 * 17 15 14 19 19 N 1.47581 * 86.11563 * 23.61098 * 18 17 15 20 20 C 1.36937 * 134.49435 * 155.35684 * 19 18 17 21 21 H 1.08002 * 120.00128 * 179.97438 * 20 19 18 22 22 C 1.38818 * 120.00011 * 0.02562 * 20 19 18 23 23 N 1.31616 * 119.99558 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99909 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47174 * 89.99917 * 24 22 20 26 26 H 1.48505 * 109.46796 * 209.99407 * 24 22 20 27 27 H 1.48499 * 109.47401 * 329.99434 * 24 22 20 28 28 H 1.08000 * 119.99935 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99596 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00419 * 179.97438 * 2 1 3 31 31 H 1.08993 * 109.47464 * 15.00087 * 3 2 1 32 32 H 1.08998 * 109.47006 * 254.99648 * 3 2 1 33 33 H 1.07995 * 120.78402 * 0.03897 * 6 5 4 34 34 H 1.08000 * 120.27830 * 180.27765 * 7 6 5 35 35 H 1.08002 * 119.47198 * 179.70885 * 8 7 6 36 36 H 0.96993 * 119.99446 * 0.02562 * 13 11 10 37 37 H 1.09001 * 109.47451 * 300.00268 * 14 13 11 38 38 H 1.09002 * 109.47195 * 60.00681 * 14 13 11 39 39 H 1.09000 * 113.74460 * 336.44611 * 17 15 14 40 40 H 1.09005 * 113.73956 * 107.64096 * 17 15 14 41 41 H 1.08998 * 113.76641 * 137.90872 * 18 17 15 42 42 H 1.08994 * 113.77023 * 269.19570 * 18 17 15 43 43 H 0.97004 * 120.00005 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9528 5 6 3.9082 2.3431 1.0781 6 6 3.6666 3.4746 0.3016 7 6 4.4870 4.5754 0.4686 8 6 5.5254 4.5192 1.3875 9 7 5.7345 3.4414 2.1091 10 6 4.9699 2.3615 1.9887 11 6 5.2429 1.1718 2.8225 12 8 4.5461 0.1815 2.7152 13 7 6.2650 1.1847 3.7010 14 6 6.5359 0.0054 4.5269 15 6 7.7390 0.2814 5.4310 16 1 8.6153 0.6231 4.8802 17 6 8.0367 -0.8509 6.4305 18 6 8.2790 0.2622 7.4660 19 7 7.4181 1.1046 6.6131 20 6 6.6359 2.2072 6.8311 21 1 6.0879 2.6509 6.0130 22 6 6.5482 2.7555 8.1035 23 7 7.2164 2.2151 9.1003 24 14 5.4817 4.2600 8.4006 25 1 4.1072 3.8289 8.7616 26 1 6.0562 5.0625 9.5103 27 1 5.4339 5.0845 7.1665 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3856 2.1161 0.2660 32 1 2.4756 1.4868 -0.9926 33 1 2.8549 3.4933 -0.4105 34 1 4.3238 5.4697 -0.1145 35 1 6.1692 5.3769 1.5149 36 1 6.8212 1.9747 3.7863 37 1 5.6633 -0.2161 5.1414 38 1 6.7528 -0.8470 3.8831 39 1 7.1733 -1.4777 6.6536 40 1 8.9289 -1.4278 6.1870 41 1 7.8530 0.0501 8.4466 42 1 9.3147 0.5981 7.5157 43 1 7.1549 2.5979 9.9895 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038904635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:26 Heat of formation + Delta-G solvation = 24.514156 kcal Electronic energy + Delta-G solvation = -26158.193594 eV Core-core repulsion = 22398.796544 eV Total energy + Delta-G solvation = -3759.397050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.97489 -40.38619 -39.49335 -39.26411 -35.53616 -35.04698 -34.20800 -33.39063 -31.67734 -29.90834 -29.24706 -27.70609 -25.71819 -25.28462 -23.99810 -23.53643 -21.85851 -21.00901 -20.78489 -19.54586 -18.96049 -18.27470 -18.14640 -17.28406 -17.06105 -16.74508 -16.42945 -16.18316 -15.82234 -15.71189 -15.40447 -15.08616 -14.97037 -14.49662 -14.45399 -14.08526 -13.72841 -13.55446 -13.26599 -13.05355 -12.95048 -12.69981 -12.60528 -12.57185 -12.28181 -11.99918 -11.84663 -11.53677 -11.42190 -11.15025 -10.85977 -10.83317 -10.65331 -10.41467 -10.03499 -9.49475 -8.87148 -7.86087 -5.17205 -0.36758 0.20945 1.07927 1.41292 1.43145 1.51265 1.76825 2.14515 2.25973 2.47921 2.82670 3.20060 3.34759 3.40777 3.56448 3.67082 3.89128 3.97053 4.01662 4.05530 4.10995 4.16871 4.28216 4.35089 4.47134 4.48038 4.62459 4.71341 4.84480 4.89867 4.92721 4.98268 5.06519 5.09410 5.34752 5.39850 5.47252 5.58668 5.62602 5.64201 5.75609 5.99809 6.20711 6.48718 6.82995 6.98022 7.22836 7.66101 8.61020 9.30662 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.003653 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.227351 B = 7663.338148 C = 8360.901293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.181 4.181 3 C 0.072 3.928 4 O -0.301 6.301 5 C 0.126 3.874 6 C -0.171 4.171 7 C -0.084 4.084 8 C 0.050 3.950 9 N -0.446 5.446 10 C 0.004 3.996 11 C 0.559 3.441 12 O -0.561 6.561 13 N -0.698 5.698 14 C 0.132 3.868 15 C 0.131 3.869 16 H 0.069 0.931 17 C -0.128 4.128 18 C 0.151 3.849 19 N -0.629 5.629 20 C -0.211 4.211 21 H 0.077 0.923 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.965 3.035 25 H -0.293 1.293 26 H -0.291 1.291 27 H -0.271 1.271 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.182 0.818 34 H 0.193 0.807 35 H 0.193 0.807 36 H 0.410 0.590 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.040 0.960 42 H 0.023 0.977 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 2.342 -24.048 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.199 4.199 3 C -0.002 4.002 4 O -0.212 6.212 5 C 0.075 3.925 6 C -0.197 4.197 7 C -0.104 4.104 8 C -0.112 4.112 9 N -0.158 5.158 10 C -0.133 4.133 11 C 0.345 3.655 12 O -0.440 6.440 13 N -0.348 5.348 14 C 0.008 3.992 15 C 0.025 3.975 16 H 0.086 0.914 17 C -0.167 4.167 18 C 0.026 3.974 19 N -0.356 5.356 20 C -0.340 4.340 21 H 0.094 0.906 22 C -0.262 4.262 23 N -0.603 5.603 24 Si 0.794 3.206 25 H -0.221 1.221 26 H -0.218 1.218 27 H -0.196 1.196 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.199 0.801 34 H 0.210 0.790 35 H 0.210 0.790 36 H 0.246 0.754 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.059 0.941 42 H 0.041 0.959 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.072 1.585 -23.212 24.627 hybrid contribution -0.799 1.232 0.235 1.487 sum -8.871 2.817 -22.978 24.791 Atomic orbital electron populations 1.24103 0.94681 1.03891 0.96579 1.22665 0.96396 0.97478 1.03333 1.22266 0.87572 0.97956 0.92396 1.86420 1.41860 1.34359 1.58534 1.20194 0.90269 0.88145 0.93907 1.22175 1.03821 0.92001 1.01668 1.22735 0.92084 0.99418 0.96145 1.23411 0.98602 0.95844 0.93374 1.67573 1.25790 0.99638 1.22764 1.20460 0.96968 0.94959 1.00880 1.18147 0.80514 0.86672 0.80139 1.90754 1.49315 1.34572 1.69376 1.45801 1.32036 1.18623 1.38371 1.21600 0.97892 0.87598 0.92131 1.22675 0.94367 0.90995 0.89452 0.91397 1.23559 1.02104 0.95635 0.95381 1.22169 0.92407 0.87568 0.95227 1.46428 1.51059 1.32107 1.05964 1.19244 1.18000 1.02764 0.93954 0.90551 1.25469 1.02336 1.02449 0.95916 1.69993 1.46964 1.43310 1.00025 0.85268 0.78036 0.79852 0.77414 1.22106 1.21761 1.19598 0.86555 0.86349 0.87606 0.89495 0.88754 0.80052 0.79025 0.79040 0.75376 0.93952 0.90039 0.90308 0.88541 0.94147 0.95868 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 14.31 67.77 0.97 -1.18 16 2 C -0.18 -3.39 9.89 25.64 0.25 -3.14 16 3 C 0.07 1.31 5.17 71.24 0.37 1.68 16 4 O -0.30 -8.92 8.18 -68.66 -0.56 -9.49 16 5 C 0.13 3.52 6.71 22.93 0.15 3.67 16 6 C -0.17 -2.88 9.13 22.55 0.21 -2.68 16 7 C -0.08 -1.16 10.10 22.41 0.23 -0.93 16 8 C 0.05 1.01 11.17 84.89 0.95 1.96 16 9 N -0.45 -13.60 9.54 -184.63 -1.76 -15.36 16 10 C 0.00 0.13 6.76 41.93 0.28 0.41 16 11 C 0.56 22.78 7.80 86.78 0.68 23.46 16 12 O -0.56 -25.57 15.14 17.08 0.26 -25.31 16 13 N -0.70 -27.83 5.52 -465.98 -2.57 -30.40 16 14 C 0.13 5.24 5.54 86.38 0.48 5.72 16 15 C 0.13 5.27 4.33 45.09 0.20 5.47 16 16 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 17 C -0.13 -4.71 7.86 31.25 0.25 -4.46 16 18 C 0.15 7.27 7.51 86.48 0.65 7.92 16 19 N -0.63 -32.43 3.57 -694.18 -2.48 -34.92 16 20 C -0.21 -12.08 10.51 84.03 0.88 -11.20 16 21 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 22 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 23 N -0.95 -59.04 11.38 21.65 0.25 -58.80 16 24 Si 0.96 47.98 29.55 68.60 2.03 50.00 16 25 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 26 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 27 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 28 H 0.12 1.17 7.90 -2.91 -0.02 1.14 16 29 H 0.12 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.11 2.28 8.06 -2.91 -0.02 2.25 16 31 H 0.09 1.18 7.42 -2.39 -0.02 1.16 16 32 H 0.09 1.20 7.69 -2.39 -0.02 1.18 16 33 H 0.18 1.58 6.46 -2.91 -0.02 1.56 16 34 H 0.19 0.72 8.06 -2.91 -0.02 0.70 16 35 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.41 16.29 7.80 -92.71 -0.72 15.57 16 37 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 40 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 41 H 0.04 2.19 7.15 -2.39 -0.02 2.17 16 42 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -81.27 368.09 2.46 -78.81 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.30 Total: 22.39 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 7.01 Total: 23.07 kcal Atomic # 7 Polarization: -132.90 SS G_CDS: -6.57 Total: -139.47 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.30 Total: -34.80 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.00 kcal Total: -81.27 2.46 -78.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038904635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.320 kcal (2) G-P(sol) polarization free energy of solvation -81.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds