Wall clock time and date at job start Tue Mar 31 2020 12:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.58539 * 2 1 4 4 C 1.53192 * 109.59043 * 239.71181 * 2 1 3 5 5 C 1.53354 * 109.14971 * 185.56113 * 4 2 1 6 6 H 1.08997 * 109.43029 * 301.24347 * 5 4 2 7 7 N 1.46501 * 109.41342 * 181.32789 * 5 4 2 8 8 C 1.36943 * 119.99666 * 154.87628 * 7 5 4 9 9 H 1.07994 * 119.99893 * 359.97438 * 8 7 5 10 10 C 1.38803 * 119.99845 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00479 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99992 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46923 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47128 * 119.99975 * 12 10 8 15 15 H 1.48500 * 109.47245 * 239.99920 * 12 10 8 16 16 C 1.53039 * 109.60629 * 61.28907 * 5 4 2 17 17 C 1.53189 * 109.31187 * 298.62739 * 16 5 4 18 18 N 1.46919 * 108.78075 * 54.63691 * 17 16 5 19 19 C 1.34770 * 120.63748 * 126.41150 * 18 17 16 20 20 O 1.21724 * 120.00789 * 187.24732 * 19 18 17 21 21 C 1.46498 * 119.99705 * 7.24595 * 19 18 17 22 22 C 1.37782 * 125.85572 * 199.95279 * 21 19 18 23 23 C 1.39936 * 107.68408 * 179.84304 * 22 21 19 24 24 O 1.35119 * 145.14117 * 179.97438 * 23 22 21 25 25 C 1.34383 * 109.62498 * 180.42599 * 24 23 22 26 26 C 1.34464 * 109.44766 * 0.02562 * 25 24 23 27 27 C 1.39139 * 107.40107 * 0.41584 * 23 22 21 28 28 N 1.37106 * 108.11223 * 359.74680 * 27 23 22 29 29 H 0.97003 * 125.74464 * 180.02562 * 28 27 23 30 30 H 1.08999 * 109.47212 * 303.00184 * 1 2 3 31 31 H 1.08997 * 109.46941 * 63.00070 * 1 2 3 32 32 H 1.09004 * 109.47178 * 182.99922 * 1 2 3 33 33 H 1.08994 * 109.49805 * 305.39046 * 4 2 1 34 34 H 1.09003 * 109.49030 * 65.48318 * 4 2 1 35 35 H 0.96996 * 120.00074 * 334.87277 * 7 5 4 36 36 H 0.96997 * 120.00770 * 180.02562 * 11 10 8 37 37 H 1.08996 * 109.49681 * 178.67138 * 16 5 4 38 38 H 1.09001 * 109.49269 * 58.57556 * 16 5 4 39 39 H 1.08997 * 109.58693 * 294.84177 * 17 16 5 40 40 H 1.09003 * 109.69993 * 174.49150 * 17 16 5 41 41 H 1.07993 * 126.16329 * 359.97438 * 22 21 19 42 42 H 1.08002 * 125.27439 * 179.97438 * 25 24 23 43 43 H 1.08004 * 126.41586 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2462 5 6 3.5707 -0.8443 -1.1672 6 1 4.0071 0.1519 -1.0964 7 7 4.0711 -1.5116 -2.3716 8 6 5.3553 -1.2911 -2.7930 9 1 5.9989 -0.6250 -2.2377 10 6 5.8297 -1.9237 -3.9338 11 7 5.0455 -2.7360 -4.6103 12 14 7.5812 -1.6224 -4.5090 13 1 8.2505 -0.6748 -3.5820 14 1 8.3247 -2.9077 -4.5258 15 1 7.5605 -1.0446 -5.8769 16 6 3.9603 -1.6606 0.0673 17 6 3.4654 -0.9423 1.3265 18 7 2.0226 -0.6980 1.1955 19 6 1.1671 -1.1058 2.1537 20 8 -0.0338 -1.0172 1.9755 21 6 1.6825 -1.6560 3.4098 22 6 0.9807 -2.4479 4.2922 23 6 1.8348 -2.7591 5.3560 24 8 1.9483 -3.4166 6.5310 25 6 3.1825 -3.2369 7.0314 26 6 3.8956 -2.4612 6.1962 27 6 3.0541 -2.1371 5.1064 28 7 2.9538 -1.4648 3.9157 29 1 3.6571 -0.9432 3.4984 30 1 -0.3633 0.5597 0.8618 31 1 -0.3633 0.4665 -0.9156 32 1 -0.3634 -1.0263 0.0538 33 1 1.6050 -1.7246 -1.2920 34 1 1.7638 -0.1655 -2.1371 35 1 3.4929 -2.1097 -2.8704 36 1 5.3770 -3.1784 -5.4072 37 1 5.0447 -1.7623 0.1088 38 1 3.5037 -2.6487 0.0089 39 1 3.9886 0.0078 1.4347 40 1 3.6526 -1.5642 2.2019 41 1 -0.0436 -2.7720 4.1817 42 1 3.5450 -3.6507 7.9608 43 1 4.9196 -2.1454 6.3316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044626439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:15 Heat of formation + Delta-G solvation = 74.255266 kcal Electronic energy + Delta-G solvation = -26675.684003 eV Core-core repulsion = 22918.443890 eV Total energy + Delta-G solvation = -3757.240114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.13742 -40.84702 -39.08259 -37.45552 -34.65250 -33.04668 -32.44884 -32.02571 -30.77299 -29.52689 -28.34585 -27.03045 -24.62395 -23.80960 -23.23472 -21.65654 -21.47759 -20.82799 -20.17685 -19.40965 -17.89590 -17.26427 -17.06419 -16.45942 -16.16259 -15.48287 -15.39474 -14.98961 -14.77004 -14.16940 -13.86704 -13.72225 -13.66264 -13.49600 -13.28680 -13.15666 -12.99385 -12.58237 -12.23517 -12.16095 -11.90066 -11.64244 -11.45391 -10.98398 -10.90531 -10.88570 -10.53648 -10.28677 -10.25980 -9.92217 -9.78609 -9.26043 -8.99730 -8.75196 -8.60102 -8.03312 -7.05140 -5.83873 -3.13771 0.84710 2.04810 2.32319 2.48718 2.61473 2.99847 3.25392 3.37538 3.42735 3.45537 4.29951 4.39208 4.51007 4.71747 4.76962 5.06593 5.08413 5.14780 5.15813 5.24791 5.31802 5.38339 5.40541 5.53602 5.60715 5.68906 5.81467 5.89718 5.94455 6.04568 6.11610 6.16803 6.22552 6.35261 6.38097 6.42383 6.51419 6.67473 6.79263 6.93873 6.95534 7.09068 7.34215 7.61885 8.05983 8.33972 9.45459 10.02272 10.36907 11.38525 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015777 B = 0.003262 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.329972 B = 8582.903300 C = 9929.526624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H 0.074 0.926 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.071 0.929 10 C -0.012 4.012 11 N -0.930 5.930 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 C -0.149 4.149 17 C 0.084 3.916 18 N -0.598 5.598 19 C 0.588 3.412 20 O -0.518 6.518 21 C 0.014 3.986 22 C -0.085 4.085 23 C -0.039 4.039 24 O -0.169 6.169 25 C 0.008 3.992 26 C -0.201 4.201 27 C 0.003 3.997 28 N -0.534 5.534 29 H 0.426 0.574 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.159 0.841 42 H 0.211 0.789 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.711 3.155 21.403 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 H 0.092 0.908 4 C -0.175 4.175 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.363 5.363 8 C -0.373 4.373 9 H 0.089 0.911 10 C -0.208 4.208 11 N -0.578 5.578 12 Si 0.737 3.263 13 H -0.206 1.206 14 H -0.218 1.218 15 H -0.218 1.218 16 C -0.190 4.190 17 C -0.040 4.040 18 N -0.331 5.331 19 C 0.376 3.624 20 O -0.395 6.395 21 C -0.098 4.098 22 C -0.113 4.113 23 C -0.091 4.091 24 O -0.067 6.067 25 C -0.060 4.060 26 C -0.222 4.222 27 C -0.110 4.110 28 N -0.144 5.144 29 H 0.271 0.729 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.177 0.823 42 H 0.228 0.772 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.299 3.216 21.247 22.133 hybrid contribution 1.695 0.082 -0.662 1.821 sum -3.605 3.298 20.585 21.157 Atomic orbital electron populations 1.22232 0.92563 1.03954 1.00703 1.21382 0.95664 0.94935 0.83413 0.90826 1.22370 0.97434 1.01184 0.96491 1.20214 0.90963 0.94901 0.87037 0.93402 1.42430 1.13039 1.54203 1.26641 1.19257 0.89143 1.22253 1.06694 0.91138 1.24758 0.98188 0.99712 0.98154 1.69668 1.35385 1.33249 1.19516 0.86141 0.84438 0.77304 0.78415 1.20570 1.21846 1.21819 1.22670 1.01759 1.00227 0.94336 1.22373 0.80036 1.00729 1.00817 1.48109 1.07293 1.57314 1.20417 1.16940 0.86051 0.77941 0.81501 1.90925 1.14412 1.54954 1.79198 1.20452 0.84261 1.07258 0.97858 1.19859 0.99479 1.01951 0.89987 1.19301 0.96907 1.02835 0.90042 1.84018 1.31846 1.60429 1.30399 1.24032 0.81841 1.00330 0.99769 1.20572 1.01157 1.06543 0.93973 1.19135 0.97715 1.02637 0.91472 1.42210 1.12439 1.42823 1.16955 0.72899 0.91400 0.93503 0.90768 0.91552 0.90336 0.78175 0.93465 0.90447 0.91864 0.91058 0.89973 0.82311 0.77231 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 7.59 37.16 0.28 -1.59 16 2 C 0.15 2.03 3.48 -67.60 -0.24 1.80 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 4 C -0.14 -2.17 4.87 -26.45 -0.13 -2.30 16 5 C 0.18 3.28 2.73 -67.73 -0.19 3.10 16 6 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 7 N -0.72 -17.29 5.12 -53.23 -0.27 -17.57 16 8 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 11 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 12 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 C -0.15 -2.38 5.66 -26.61 -0.15 -2.54 16 17 C 0.08 1.02 5.30 -3.72 -0.02 1.00 16 18 N -0.60 -7.98 2.97 -166.82 -0.50 -8.47 16 19 C 0.59 8.33 7.54 -12.94 -0.10 8.24 16 20 O -0.52 -8.33 12.33 5.17 0.06 -8.27 16 21 C 0.01 0.18 6.45 -81.86 -0.53 -0.35 16 22 C -0.09 -1.10 10.64 -39.11 -0.42 -1.52 16 23 C -0.04 -0.50 8.20 -38.61 -0.32 -0.81 16 24 O -0.17 -1.93 10.68 3.20 0.03 -1.89 16 25 C 0.01 0.06 12.02 29.40 0.35 0.42 16 26 C -0.20 -1.77 10.89 -39.69 -0.43 -2.20 16 27 C 0.00 0.04 8.11 -83.95 -0.68 -0.64 16 28 N -0.53 -5.90 4.88 -7.04 -0.03 -5.93 16 29 H 0.43 3.82 6.07 -40.82 -0.25 3.57 16 30 H 0.07 0.95 6.76 -51.93 -0.35 0.60 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.13 6.73 -51.93 -0.35 0.79 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.90 4.01 -51.93 -0.21 0.69 16 41 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 42 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -32.12 345.58 -8.27 -40.39 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -5.67 Total: 11.03 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.80 Total: -4.41 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.08 Total: -58.80 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.10 Total: -10.16 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.12 -8.27 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.642 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds