Wall clock time and date at job start Tue Mar 31 2020 12:55:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09001 * 109.58539 * 2 1
4 4 C 1.53192 * 109.59043 * 239.71181 * 2 1 3
5 5 C 1.53354 * 109.14971 * 185.56113 * 4 2 1
6 6 H 1.08997 * 109.43029 * 301.24347 * 5 4 2
7 7 N 1.46501 * 109.41342 * 181.32789 * 5 4 2
8 8 C 1.36943 * 119.99666 * 154.87628 * 7 5 4
9 9 H 1.07994 * 119.99893 * 359.97438 * 8 7 5
10 10 C 1.38803 * 119.99845 * 179.97438 * 8 7 5
11 11 N 1.31620 * 120.00479 * 359.97438 * 10 8 7
12 12 Si 1.86803 * 119.99992 * 179.97438 * 10 8 7
13 13 H 1.48499 * 109.46923 * 359.97438 * 12 10 8
14 14 H 1.48496 * 109.47128 * 119.99975 * 12 10 8
15 15 H 1.48500 * 109.47245 * 239.99920 * 12 10 8
16 16 C 1.53039 * 109.60629 * 61.28907 * 5 4 2
17 17 C 1.53189 * 109.31187 * 298.62739 * 16 5 4
18 18 N 1.46919 * 108.78075 * 54.63691 * 17 16 5
19 19 C 1.34770 * 120.63748 * 126.41150 * 18 17 16
20 20 O 1.21724 * 120.00789 * 187.24732 * 19 18 17
21 21 C 1.46498 * 119.99705 * 7.24595 * 19 18 17
22 22 C 1.37782 * 125.85572 * 199.95279 * 21 19 18
23 23 C 1.39936 * 107.68408 * 179.84304 * 22 21 19
24 24 O 1.35119 * 145.14117 * 179.97438 * 23 22 21
25 25 C 1.34383 * 109.62498 * 180.42599 * 24 23 22
26 26 C 1.34464 * 109.44766 * 0.02562 * 25 24 23
27 27 C 1.39139 * 107.40107 * 0.41584 * 23 22 21
28 28 N 1.37106 * 108.11223 * 359.74680 * 27 23 22
29 29 H 0.97003 * 125.74464 * 180.02562 * 28 27 23
30 30 H 1.08999 * 109.47212 * 303.00184 * 1 2 3
31 31 H 1.08997 * 109.46941 * 63.00070 * 1 2 3
32 32 H 1.09004 * 109.47178 * 182.99922 * 1 2 3
33 33 H 1.08994 * 109.49805 * 305.39046 * 4 2 1
34 34 H 1.09003 * 109.49030 * 65.48318 * 4 2 1
35 35 H 0.96996 * 120.00074 * 334.87277 * 7 5 4
36 36 H 0.96997 * 120.00770 * 180.02562 * 11 10 8
37 37 H 1.08996 * 109.49681 * 178.67138 * 16 5 4
38 38 H 1.09001 * 109.49269 * 58.57556 * 16 5 4
39 39 H 1.08997 * 109.58693 * 294.84177 * 17 16 5
40 40 H 1.09003 * 109.69993 * 174.49150 * 17 16 5
41 41 H 1.07993 * 126.16329 * 359.97438 * 22 21 19
42 42 H 1.08002 * 125.27439 * 179.97438 * 25 24 23
43 43 H 1.08004 * 126.41586 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0269 0.0000
4 6 2.0436 -0.7279 -1.2462
5 6 3.5707 -0.8443 -1.1672
6 1 4.0071 0.1519 -1.0964
7 7 4.0711 -1.5116 -2.3716
8 6 5.3553 -1.2911 -2.7930
9 1 5.9989 -0.6250 -2.2377
10 6 5.8297 -1.9237 -3.9338
11 7 5.0455 -2.7360 -4.6103
12 14 7.5812 -1.6224 -4.5090
13 1 8.2505 -0.6748 -3.5820
14 1 8.3247 -2.9077 -4.5258
15 1 7.5605 -1.0446 -5.8769
16 6 3.9603 -1.6606 0.0673
17 6 3.4654 -0.9423 1.3265
18 7 2.0226 -0.6980 1.1955
19 6 1.1671 -1.1058 2.1537
20 8 -0.0338 -1.0172 1.9755
21 6 1.6825 -1.6560 3.4098
22 6 0.9807 -2.4479 4.2922
23 6 1.8348 -2.7591 5.3560
24 8 1.9483 -3.4166 6.5310
25 6 3.1825 -3.2369 7.0314
26 6 3.8956 -2.4612 6.1962
27 6 3.0541 -2.1371 5.1064
28 7 2.9538 -1.4648 3.9157
29 1 3.6571 -0.9432 3.4984
30 1 -0.3633 0.5597 0.8618
31 1 -0.3633 0.4665 -0.9156
32 1 -0.3634 -1.0263 0.0538
33 1 1.6050 -1.7246 -1.2920
34 1 1.7638 -0.1655 -2.1371
35 1 3.4929 -2.1097 -2.8704
36 1 5.3770 -3.1784 -5.4072
37 1 5.0447 -1.7623 0.1088
38 1 3.5037 -2.6487 0.0089
39 1 3.9886 0.0078 1.4347
40 1 3.6526 -1.5642 2.2019
41 1 -0.0436 -2.7720 4.1817
42 1 3.5450 -3.6507 7.9608
43 1 4.9196 -2.1454 6.3316
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001044626439.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:55:15
Heat of formation + Delta-G solvation = 74.255266 kcal
Electronic energy + Delta-G solvation = -26675.684003 eV
Core-core repulsion = 22918.443890 eV
Total energy + Delta-G solvation = -3757.240114 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.153 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-43.13742 -40.84702 -39.08259 -37.45552 -34.65250 -33.04668 -32.44884 -32.02571
-30.77299 -29.52689 -28.34585 -27.03045 -24.62395 -23.80960 -23.23472 -21.65654
-21.47759 -20.82799 -20.17685 -19.40965 -17.89590 -17.26427 -17.06419 -16.45942
-16.16259 -15.48287 -15.39474 -14.98961 -14.77004 -14.16940 -13.86704 -13.72225
-13.66264 -13.49600 -13.28680 -13.15666 -12.99385 -12.58237 -12.23517 -12.16095
-11.90066 -11.64244 -11.45391 -10.98398 -10.90531 -10.88570 -10.53648 -10.28677
-10.25980 -9.92217 -9.78609 -9.26043 -8.99730 -8.75196 -8.60102 -8.03312
-7.05140 -5.83873 -3.13771 0.84710 2.04810 2.32319 2.48718 2.61473
2.99847 3.25392 3.37538 3.42735 3.45537 4.29951 4.39208 4.51007
4.71747 4.76962 5.06593 5.08413 5.14780 5.15813 5.24791 5.31802
5.38339 5.40541 5.53602 5.60715 5.68906 5.81467 5.89718 5.94455
6.04568 6.11610 6.16803 6.22552 6.35261 6.38097 6.42383 6.51419
6.67473 6.79263 6.93873 6.95534 7.09068 7.34215 7.61885 8.05983
8.33972 9.45459 10.02272 10.36907 11.38525
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.015777 B = 0.003262 C = 0.002819
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1774.329972 B = 8582.903300 C = 9929.526624
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C 0.148 3.852
3 H 0.074 0.926
4 C -0.136 4.136
5 C 0.179 3.821
6 H 0.048 0.952
7 N -0.723 5.723
8 C -0.242 4.242
9 H 0.071 0.929
10 C -0.012 4.012
11 N -0.930 5.930
12 Si 0.906 3.094
13 H -0.280 1.280
14 H -0.291 1.291
15 H -0.291 1.291
16 C -0.149 4.149
17 C 0.084 3.916
18 N -0.598 5.598
19 C 0.588 3.412
20 O -0.518 6.518
21 C 0.014 3.986
22 C -0.085 4.085
23 C -0.039 4.039
24 O -0.169 6.169
25 C 0.008 3.992
26 C -0.201 4.201
27 C 0.003 3.997
28 N -0.534 5.534
29 H 0.426 0.574
30 H 0.067 0.933
31 H 0.046 0.954
32 H 0.073 0.927
33 H 0.066 0.934
34 H 0.078 0.922
35 H 0.385 0.615
36 H 0.255 0.745
37 H 0.077 0.923
38 H 0.063 0.937
39 H 0.071 0.929
40 H 0.083 0.917
41 H 0.159 0.841
42 H 0.211 0.789
43 H 0.153 0.847
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.711 3.155 21.403 22.141
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C 0.046 3.954
3 H 0.092 0.908
4 C -0.175 4.175
5 C 0.069 3.931
6 H 0.066 0.934
7 N -0.363 5.363
8 C -0.373 4.373
9 H 0.089 0.911
10 C -0.208 4.208
11 N -0.578 5.578
12 Si 0.737 3.263
13 H -0.206 1.206
14 H -0.218 1.218
15 H -0.218 1.218
16 C -0.190 4.190
17 C -0.040 4.040
18 N -0.331 5.331
19 C 0.376 3.624
20 O -0.395 6.395
21 C -0.098 4.098
22 C -0.113 4.113
23 C -0.091 4.091
24 O -0.067 6.067
25 C -0.060 4.060
26 C -0.222 4.222
27 C -0.110 4.110
28 N -0.144 5.144
29 H 0.271 0.729
30 H 0.086 0.914
31 H 0.065 0.935
32 H 0.092 0.908
33 H 0.084 0.916
34 H 0.097 0.903
35 H 0.218 0.782
36 H 0.065 0.935
37 H 0.096 0.904
38 H 0.081 0.919
39 H 0.089 0.911
40 H 0.100 0.900
41 H 0.177 0.823
42 H 0.228 0.772
43 H 0.171 0.829
Dipole moment (debyes) X Y Z Total
from point charges -5.299 3.216 21.247 22.133
hybrid contribution 1.695 0.082 -0.662 1.821
sum -3.605 3.298 20.585 21.157
Atomic orbital electron populations
1.22232 0.92563 1.03954 1.00703 1.21382 0.95664 0.94935 0.83413
0.90826 1.22370 0.97434 1.01184 0.96491 1.20214 0.90963 0.94901
0.87037 0.93402 1.42430 1.13039 1.54203 1.26641 1.19257 0.89143
1.22253 1.06694 0.91138 1.24758 0.98188 0.99712 0.98154 1.69668
1.35385 1.33249 1.19516 0.86141 0.84438 0.77304 0.78415 1.20570
1.21846 1.21819 1.22670 1.01759 1.00227 0.94336 1.22373 0.80036
1.00729 1.00817 1.48109 1.07293 1.57314 1.20417 1.16940 0.86051
0.77941 0.81501 1.90925 1.14412 1.54954 1.79198 1.20452 0.84261
1.07258 0.97858 1.19859 0.99479 1.01951 0.89987 1.19301 0.96907
1.02835 0.90042 1.84018 1.31846 1.60429 1.30399 1.24032 0.81841
1.00330 0.99769 1.20572 1.01157 1.06543 0.93973 1.19135 0.97715
1.02637 0.91472 1.42210 1.12439 1.42823 1.16955 0.72899 0.91400
0.93503 0.90768 0.91552 0.90336 0.78175 0.93465 0.90447 0.91864
0.91058 0.89973 0.82311 0.77231 0.82905
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.87 7.59 37.16 0.28 -1.59 16
2 C 0.15 2.03 3.48 -67.60 -0.24 1.80 16
3 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
4 C -0.14 -2.17 4.87 -26.45 -0.13 -2.30 16
5 C 0.18 3.28 2.73 -67.73 -0.19 3.10 16
6 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16
7 N -0.72 -17.29 5.12 -53.23 -0.27 -17.57 16
8 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16
9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16
10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16
11 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16
12 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16
13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
16 C -0.15 -2.38 5.66 -26.61 -0.15 -2.54 16
17 C 0.08 1.02 5.30 -3.72 -0.02 1.00 16
18 N -0.60 -7.98 2.97 -166.82 -0.50 -8.47 16
19 C 0.59 8.33 7.54 -12.94 -0.10 8.24 16
20 O -0.52 -8.33 12.33 5.17 0.06 -8.27 16
21 C 0.01 0.18 6.45 -81.86 -0.53 -0.35 16
22 C -0.09 -1.10 10.64 -39.11 -0.42 -1.52 16
23 C -0.04 -0.50 8.20 -38.61 -0.32 -0.81 16
24 O -0.17 -1.93 10.68 3.20 0.03 -1.89 16
25 C 0.01 0.06 12.02 29.40 0.35 0.42 16
26 C -0.20 -1.77 10.89 -39.69 -0.43 -2.20 16
27 C 0.00 0.04 8.11 -83.95 -0.68 -0.64 16
28 N -0.53 -5.90 4.88 -7.04 -0.03 -5.93 16
29 H 0.43 3.82 6.07 -40.82 -0.25 3.57 16
30 H 0.07 0.95 6.76 -51.93 -0.35 0.60 16
31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.07 1.13 6.73 -51.93 -0.35 0.79 16
33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16
35 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16
36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16
37 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16
38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
40 H 0.08 0.90 4.01 -51.93 -0.21 0.69 16
41 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16
42 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16
43 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16
LS Contribution 345.58 15.07 5.21 5.21
Total: -1.00 -32.12 345.58 -8.27 -40.39
By element:
Atomic # 1 Polarization: 16.69 SS G_CDS: -5.67 Total: 11.03 kcal
Atomic # 6 Polarization: -1.61 SS G_CDS: -2.80 Total: -4.41 kcal
Atomic # 7 Polarization: -58.72 SS G_CDS: -0.08 Total: -58.80 kcal
Atomic # 8 Polarization: -10.26 SS G_CDS: 0.10 Total: -10.16 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -32.12 -8.27 -40.39 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001044626439.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.642 kcal
(2) G-P(sol) polarization free energy of solvation -32.120 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.521 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal
(6) G-S(sol) free energy of system = (1) + (5) 74.255 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds