Wall clock time and date at job start Tue Mar 31 2020 12:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.58539 * 2 1 4 4 C 1.53192 * 109.59043 * 239.71181 * 2 1 3 5 5 C 1.53354 * 109.14971 * 185.56113 * 4 2 1 6 6 H 1.08997 * 109.43029 * 301.24347 * 5 4 2 7 7 N 1.46501 * 109.41342 * 181.32789 * 5 4 2 8 8 C 1.36943 * 119.99666 * 154.87628 * 7 5 4 9 9 H 1.07994 * 119.99893 * 359.97438 * 8 7 5 10 10 C 1.38803 * 119.99845 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00479 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99992 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46923 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47128 * 119.99975 * 12 10 8 15 15 H 1.48500 * 109.47245 * 239.99920 * 12 10 8 16 16 C 1.53039 * 109.60629 * 61.28907 * 5 4 2 17 17 C 1.53189 * 109.31187 * 298.62739 * 16 5 4 18 18 N 1.46919 * 108.78075 * 54.63691 * 17 16 5 19 19 C 1.34770 * 120.63748 * 126.41150 * 18 17 16 20 20 O 1.21724 * 120.00789 * 187.24732 * 19 18 17 21 21 C 1.46498 * 119.99705 * 7.24595 * 19 18 17 22 22 C 1.37782 * 125.85572 * 199.95279 * 21 19 18 23 23 C 1.39936 * 107.68408 * 179.84304 * 22 21 19 24 24 O 1.35119 * 145.14117 * 179.97438 * 23 22 21 25 25 C 1.34383 * 109.62498 * 180.42599 * 24 23 22 26 26 C 1.34464 * 109.44766 * 0.02562 * 25 24 23 27 27 C 1.39139 * 107.40107 * 0.41584 * 23 22 21 28 28 N 1.37106 * 108.11223 * 359.74680 * 27 23 22 29 29 H 0.97003 * 125.74464 * 180.02562 * 28 27 23 30 30 H 1.08999 * 109.47212 * 303.00184 * 1 2 3 31 31 H 1.08997 * 109.46941 * 63.00070 * 1 2 3 32 32 H 1.09004 * 109.47178 * 182.99922 * 1 2 3 33 33 H 1.08994 * 109.49805 * 305.39046 * 4 2 1 34 34 H 1.09003 * 109.49030 * 65.48318 * 4 2 1 35 35 H 0.96996 * 120.00074 * 334.87277 * 7 5 4 36 36 H 0.96997 * 120.00770 * 180.02562 * 11 10 8 37 37 H 1.08996 * 109.49681 * 178.67138 * 16 5 4 38 38 H 1.09001 * 109.49269 * 58.57556 * 16 5 4 39 39 H 1.08997 * 109.58693 * 294.84177 * 17 16 5 40 40 H 1.09003 * 109.69993 * 174.49150 * 17 16 5 41 41 H 1.07993 * 126.16329 * 359.97438 * 22 21 19 42 42 H 1.08002 * 125.27439 * 179.97438 * 25 24 23 43 43 H 1.08004 * 126.41586 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2462 5 6 3.5707 -0.8443 -1.1672 6 1 4.0071 0.1519 -1.0964 7 7 4.0711 -1.5116 -2.3716 8 6 5.3553 -1.2911 -2.7930 9 1 5.9989 -0.6250 -2.2377 10 6 5.8297 -1.9237 -3.9338 11 7 5.0455 -2.7360 -4.6103 12 14 7.5812 -1.6224 -4.5090 13 1 8.2505 -0.6748 -3.5820 14 1 8.3247 -2.9077 -4.5258 15 1 7.5605 -1.0446 -5.8769 16 6 3.9603 -1.6606 0.0673 17 6 3.4654 -0.9423 1.3265 18 7 2.0226 -0.6980 1.1955 19 6 1.1671 -1.1058 2.1537 20 8 -0.0338 -1.0172 1.9755 21 6 1.6825 -1.6560 3.4098 22 6 0.9807 -2.4479 4.2922 23 6 1.8348 -2.7591 5.3560 24 8 1.9483 -3.4166 6.5310 25 6 3.1825 -3.2369 7.0314 26 6 3.8956 -2.4612 6.1962 27 6 3.0541 -2.1371 5.1064 28 7 2.9538 -1.4648 3.9157 29 1 3.6571 -0.9432 3.4984 30 1 -0.3633 0.5597 0.8618 31 1 -0.3633 0.4665 -0.9156 32 1 -0.3634 -1.0263 0.0538 33 1 1.6050 -1.7246 -1.2920 34 1 1.7638 -0.1655 -2.1371 35 1 3.4929 -2.1097 -2.8704 36 1 5.3770 -3.1784 -5.4072 37 1 5.0447 -1.7623 0.1088 38 1 3.5037 -2.6487 0.0089 39 1 3.9886 0.0078 1.4347 40 1 3.6526 -1.5642 2.2019 41 1 -0.0436 -2.7720 4.1817 42 1 3.5450 -3.6507 7.9608 43 1 4.9196 -2.1454 6.3316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044626439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:14 Heat of formation + Delta-G solvation = 53.573535 kcal Electronic energy + Delta-G solvation = -26676.580831 eV Core-core repulsion = 22918.443890 eV Total energy + Delta-G solvation = -3758.136941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.95027 -41.89469 -40.04296 -38.74240 -36.26723 -34.20352 -33.73002 -33.23993 -31.68493 -31.14273 -29.36254 -28.26226 -26.12732 -25.00860 -24.59913 -22.64809 -22.50549 -21.69793 -21.51513 -20.46746 -19.19864 -18.68487 -18.09863 -17.31158 -17.24573 -16.76171 -16.50365 -16.42052 -15.77900 -15.55926 -15.46956 -14.97249 -14.69782 -14.57457 -14.49772 -14.40772 -13.86619 -13.64739 -13.49672 -13.37838 -13.10726 -12.91979 -12.81145 -12.64985 -12.60641 -12.12324 -12.07990 -12.00985 -11.72070 -11.39370 -11.05073 -10.92423 -10.40177 -9.74605 -9.62883 -9.02389 -8.86963 -7.93747 -5.22945 -0.03628 1.19176 1.48188 1.48465 1.50735 1.58268 1.62644 1.69822 2.08065 2.27339 2.56244 3.35041 3.39360 3.63918 3.71853 3.73650 3.91351 3.97246 4.01055 4.16602 4.26853 4.32224 4.44145 4.46773 4.57130 4.63975 4.67583 4.70965 4.76872 4.82512 4.94670 5.01470 5.04211 5.13549 5.22341 5.38785 5.44472 5.46466 5.52879 5.58336 5.64156 6.14209 6.22718 6.27728 6.33602 6.96703 7.33762 8.09089 8.31808 9.30077 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015777 B = 0.003262 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.329972 B = 8582.903300 C = 9929.526624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.096 0.904 4 C -0.125 4.125 5 C 0.174 3.826 6 H 0.056 0.944 7 N -0.738 5.738 8 C -0.234 4.234 9 H 0.082 0.918 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.970 3.030 13 H -0.261 1.261 14 H -0.297 1.297 15 H -0.297 1.297 16 C -0.139 4.139 17 C 0.094 3.906 18 N -0.598 5.598 19 C 0.588 3.412 20 O -0.543 6.543 21 C -0.004 4.004 22 C -0.095 4.095 23 C -0.075 4.075 24 O -0.186 6.186 25 C 0.027 3.973 26 C -0.215 4.215 27 C 0.006 3.994 28 N -0.525 5.525 29 H 0.435 0.565 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.075 0.925 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.158 0.842 42 H 0.259 0.741 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.967 4.368 24.021 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 H 0.114 0.886 4 C -0.164 4.164 5 C 0.066 3.934 6 H 0.074 0.926 7 N -0.377 5.377 8 C -0.366 4.366 9 H 0.100 0.900 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.800 3.200 13 H -0.185 1.185 14 H -0.225 1.225 15 H -0.225 1.225 16 C -0.180 4.180 17 C -0.030 4.030 18 N -0.331 5.331 19 C 0.377 3.623 20 O -0.422 6.422 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.126 4.126 24 O -0.084 6.084 25 C -0.040 4.040 26 C -0.236 4.236 27 C -0.108 4.108 28 N -0.136 5.136 29 H 0.282 0.718 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.201 0.799 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.176 0.824 42 H 0.275 0.725 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.542 4.474 23.913 24.584 hybrid contribution 1.119 -0.331 -1.311 1.756 sum -2.422 4.143 22.601 23.105 Atomic orbital electron populations 1.22094 0.92478 1.02686 1.01233 1.21358 0.95660 0.95559 0.82337 0.88584 1.22232 0.95768 1.00556 0.97865 1.20474 0.92248 0.94870 0.85850 0.92632 1.42673 1.12269 1.54377 1.28357 1.19679 0.90083 1.20807 1.05982 0.90019 1.25559 1.02001 1.00487 0.99007 1.69832 1.37212 1.35149 1.20127 0.85113 0.80152 0.77021 0.77724 1.18546 1.22473 1.22473 1.22433 1.01222 0.99134 0.95176 1.22383 0.79378 1.02100 0.99103 1.48119 1.07701 1.57119 1.20123 1.17076 0.85774 0.77464 0.81936 1.90912 1.15467 1.55967 1.79842 1.20163 0.85291 1.08465 0.97708 1.20002 0.99771 1.01966 0.90495 1.19434 0.97639 1.04499 0.91001 1.84022 1.33740 1.60637 1.30047 1.25089 0.80109 0.98408 1.00418 1.21022 1.02448 1.07088 0.93066 1.19635 0.97954 1.01614 0.91617 1.42081 1.11954 1.42714 1.16870 0.71774 0.91608 0.92203 0.92887 0.93346 0.90614 0.79898 0.94211 0.91044 0.94069 0.87915 0.88442 0.82406 0.72541 0.80039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 7.59 71.98 0.55 -2.87 16 2 C 0.15 4.00 3.48 44.97 0.16 4.16 16 3 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.13 -3.97 4.87 30.78 0.15 -3.82 16 5 C 0.17 6.25 2.73 45.12 0.12 6.37 16 6 H 0.06 1.93 8.08 -2.39 -0.02 1.92 16 7 N -0.74 -35.60 5.12 -322.32 -1.65 -37.25 16 8 C -0.23 -12.33 9.93 84.03 0.83 -11.50 16 9 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 10 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 11 N -0.97 -58.98 13.06 21.65 0.28 -58.70 16 12 Si 0.97 44.88 29.55 68.60 2.03 46.91 16 13 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 14 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 15 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 16 C -0.14 -4.32 5.66 30.67 0.17 -4.15 16 17 C 0.09 2.06 5.30 86.36 0.46 2.52 16 18 N -0.60 -15.18 2.97 -799.90 -2.38 -17.56 16 19 C 0.59 16.42 7.54 86.40 0.65 17.08 16 20 O -0.54 -17.65 12.33 -4.43 -0.05 -17.70 16 21 C 0.00 -0.10 6.45 40.19 0.26 0.15 16 22 C -0.09 -2.46 10.64 22.57 0.24 -2.22 16 23 C -0.07 -1.84 8.20 22.90 0.19 -1.65 16 24 O -0.19 -3.92 10.68 -11.48 -0.12 -4.05 16 25 C 0.03 0.33 12.02 66.96 0.80 1.13 16 26 C -0.22 -3.06 10.89 22.20 0.24 -2.82 16 27 C 0.01 0.12 8.11 39.33 0.32 0.44 16 28 N -0.52 -10.65 4.88 -176.18 -0.86 -11.51 16 29 H 0.44 6.64 6.07 -92.71 -0.56 6.08 16 30 H 0.07 1.81 6.76 -2.39 -0.02 1.79 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.65 6.73 -2.38 -0.02 1.63 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.37 19.77 7.80 -92.71 -0.72 19.05 16 36 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.10 1.90 4.01 -2.39 -0.01 1.90 16 41 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 42 H 0.26 0.30 8.06 -2.91 -0.02 0.28 16 43 H 0.18 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -71.44 345.58 2.63 -68.81 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: -0.23 Total: 32.16 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.61 Total: -1.12 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -4.61 Total: -125.01 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.18 Total: -21.75 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -71.44 2.63 -68.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.384 kcal (2) G-P(sol) polarization free energy of solvation -71.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds