Wall clock time and date at job start Tue Mar 31 2020 12:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.69769 * 2 1 4 4 C 1.53197 * 109.58683 * 239.64299 * 2 1 3 5 5 C 1.53036 * 109.31180 * 294.85065 * 4 2 1 6 6 H 1.08990 * 109.46653 * 58.64339 * 5 4 2 7 7 N 1.46501 * 109.45648 * 178.61909 * 5 4 2 8 8 C 1.36944 * 119.99700 * 205.02838 * 7 5 4 9 9 H 1.07998 * 120.00040 * 359.97438 * 8 7 5 10 10 C 1.38814 * 119.99797 * 179.97438 * 8 7 5 11 11 N 1.31614 * 119.99769 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99922 * 359.97438 * 10 8 7 13 13 H 1.48501 * 109.47395 * 90.00232 * 12 10 8 14 14 H 1.48492 * 109.47157 * 329.99918 * 12 10 8 15 15 H 1.48501 * 109.46633 * 209.99762 * 12 10 8 16 16 C 1.53043 * 109.52712 * 298.62508 * 5 4 2 17 17 C 1.53195 * 109.30927 * 61.38922 * 16 5 4 18 18 N 1.46922 * 109.58599 * 120.35608 * 2 1 3 19 19 C 1.34778 * 120.62984 * 246.15703 * 18 2 1 20 20 O 1.21732 * 120.00035 * 353.22109 * 19 18 2 21 21 C 1.46495 * 120.00089 * 173.20773 * 19 18 2 22 22 C 1.37780 * 125.85533 * 156.28911 * 21 19 18 23 23 C 1.39931 * 107.68712 * 179.97438 * 22 21 19 24 24 O 1.35123 * 145.14064 * 180.02562 * 23 22 21 25 25 C 1.34380 * 109.62296 * 180.02562 * 24 23 22 26 26 C 1.34471 * 109.44928 * 359.97438 * 25 24 23 27 27 C 1.39136 * 107.40538 * 0.02562 * 23 22 21 28 28 N 1.37114 * 108.10777 * 359.76642 * 27 23 22 29 29 H 0.96997 * 125.74661 * 180.25798 * 28 27 23 30 30 H 1.09004 * 109.47086 * 180.35079 * 1 2 3 31 31 H 1.09000 * 109.47342 * 300.35497 * 1 2 3 32 32 H 1.09001 * 109.46923 * 60.35704 * 1 2 3 33 33 H 1.08999 * 109.49217 * 174.89418 * 4 2 1 34 34 H 1.09003 * 109.49172 * 54.80358 * 4 2 1 35 35 H 0.96998 * 120.00204 * 25.01906 * 7 5 4 36 36 H 0.97004 * 120.00015 * 180.02562 * 11 10 8 37 37 H 1.08994 * 109.49940 * 181.32614 * 16 5 4 38 38 H 1.09008 * 109.49743 * 301.42751 * 16 5 4 39 39 H 1.09006 * 109.58253 * 185.56655 * 17 16 5 40 40 H 1.08994 * 109.71553 * 65.20165 * 17 16 5 41 41 H 1.08001 * 126.15835 * 359.95515 * 22 21 19 42 42 H 1.07999 * 125.27933 * 180.02562 * 25 24 23 43 43 H 1.07990 * 126.41687 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 1.6414 -2.2041 -1.1701 6 1 0.5566 -2.2815 -1.0991 7 7 2.1024 -2.8978 -2.3753 8 6 1.4647 -4.0336 -2.7978 9 1 0.6222 -4.4182 -2.2422 10 6 1.9011 -4.6906 -3.9400 11 7 1.2885 -5.7826 -4.3457 12 14 3.3579 -4.0250 -4.9012 13 1 4.6118 -4.6245 -4.3782 14 1 3.4158 -2.5486 -4.7531 15 1 3.2043 -4.3728 -6.3367 16 6 2.2803 -2.8462 0.0635 17 6 1.7691 -2.1410 1.3237 18 7 2.0225 -0.6995 1.1944 19 6 2.6944 -0.0317 2.1532 20 8 3.0062 1.1321 1.9796 21 6 3.0492 -0.7064 3.4042 22 6 4.0795 -0.3526 4.2478 23 6 4.0749 -1.2480 5.3232 24 8 4.6780 -1.5915 6.4825 25 6 4.0615 -2.6616 7.0122 26 6 3.0474 -3.0356 6.2122 27 6 3.0305 -2.1433 5.1148 28 7 2.4051 -1.8034 3.9429 29 1 1.6402 -2.2576 3.5564 30 1 -0.3633 -1.0277 0.0063 31 1 -0.3634 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8932 33 1 3.1297 -0.6503 -1.2913 34 1 1.6075 -0.2784 -2.1368 35 1 2.8593 -2.5525 -2.8741 36 1 1.5937 -6.2419 -5.1437 37 1 2.0127 -3.9020 0.1038 38 1 3.3643 -2.7469 0.0051 39 1 2.2944 -2.5275 2.1972 40 1 0.6989 -2.3154 1.4342 41 1 4.7671 0.4679 4.1047 42 1 4.3371 -3.1457 7.9374 43 1 2.3728 -3.8626 6.3764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044626440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:18 Heat of formation + Delta-G solvation = 38.285866 kcal Electronic energy + Delta-G solvation = -26726.987415 eV Core-core repulsion = 22968.187551 eV Total energy + Delta-G solvation = -3758.799864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.95873 -41.82018 -40.07408 -38.91397 -36.44425 -34.15012 -33.61911 -33.25671 -31.67672 -31.61613 -29.38344 -28.67265 -26.03540 -24.90797 -24.56875 -22.81886 -22.50475 -21.76140 -21.48618 -20.31414 -19.46397 -18.65624 -18.42204 -17.34939 -17.13534 -16.83946 -16.63214 -16.32442 -15.88702 -15.52878 -15.22835 -14.99221 -14.74856 -14.65159 -14.61495 -14.39551 -14.17407 -13.89150 -13.66506 -13.48198 -13.07591 -13.00526 -12.85187 -12.66938 -12.50785 -12.18817 -12.04371 -12.01971 -11.80025 -11.32319 -11.15506 -11.06852 -10.93903 -9.87580 -9.64668 -9.31792 -8.88667 -8.02117 -5.34859 -0.05467 1.16140 1.38203 1.39252 1.46715 1.48805 1.59842 1.68840 2.03148 2.24704 2.48057 3.29577 3.31504 3.48459 3.64864 3.72889 3.85443 3.95413 3.98667 4.16786 4.19752 4.29695 4.41634 4.44157 4.48940 4.55306 4.65284 4.67983 4.73713 4.76375 4.96571 4.99206 5.01015 5.02653 5.19053 5.27268 5.40487 5.44942 5.51752 5.59216 5.78264 6.13055 6.17790 6.22183 6.31683 6.88035 7.08043 7.84841 8.02366 9.19104 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.003301 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.179564 B = 8479.978322 C = 9280.781381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.147 3.853 3 H 0.097 0.903 4 C -0.129 4.129 5 C 0.178 3.822 6 H 0.060 0.940 7 N -0.753 5.753 8 C -0.223 4.223 9 H 0.064 0.936 10 C -0.062 4.062 11 N -0.983 5.983 12 Si 0.947 3.053 13 H -0.284 1.284 14 H -0.253 1.253 15 H -0.298 1.298 16 C -0.141 4.141 17 C 0.095 3.905 18 N -0.594 5.594 19 C 0.593 3.407 20 O -0.560 6.560 21 C -0.003 4.003 22 C -0.094 4.094 23 C -0.074 4.074 24 O -0.186 6.186 25 C 0.028 3.972 26 C -0.216 4.216 27 C 0.008 3.992 28 N -0.523 5.523 29 H 0.435 0.565 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.362 0.638 36 H 0.256 0.744 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.159 0.841 42 H 0.259 0.741 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.655 8.930 23.033 24.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.044 3.956 3 H 0.115 0.885 4 C -0.168 4.168 5 C 0.070 3.930 6 H 0.078 0.922 7 N -0.395 5.395 8 C -0.354 4.354 9 H 0.082 0.918 10 C -0.253 4.253 11 N -0.634 5.634 12 Si 0.776 3.224 13 H -0.210 1.210 14 H -0.178 1.178 15 H -0.225 1.225 16 C -0.182 4.182 17 C -0.028 4.028 18 N -0.326 5.326 19 C 0.382 3.618 20 O -0.439 6.439 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.125 4.125 24 O -0.084 6.084 25 C -0.039 4.039 26 C -0.237 4.237 27 C -0.106 4.106 28 N -0.133 5.133 29 H 0.280 0.720 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.195 0.805 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.176 0.824 42 H 0.275 0.725 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.739 9.485 22.917 24.864 hybrid contribution 0.490 -0.522 -1.343 1.522 sum 2.230 8.963 21.574 23.468 Atomic orbital electron populations 1.22126 0.92928 1.03134 1.03254 1.21208 0.95359 0.96638 0.82395 0.88500 1.22160 1.01106 0.95441 0.98095 1.20410 0.97462 0.90052 0.85080 0.92158 1.42857 1.37548 1.29519 1.29552 1.19029 1.09937 1.00097 1.06288 0.91757 1.25403 1.02190 0.97892 0.99846 1.69859 1.45011 1.21441 1.27040 0.85521 0.79988 0.79177 0.77753 1.21016 1.17815 1.22542 1.22429 1.00478 1.00234 0.95087 1.22294 1.02684 0.78633 0.99222 1.48163 1.54549 1.09617 1.20260 1.17027 0.77441 0.85312 0.82050 1.90830 1.55275 1.17293 1.80516 1.19943 1.00023 0.93843 0.97700 1.20003 1.00581 1.00816 0.90761 1.19406 0.98704 1.02718 0.91630 1.84026 1.51129 1.42732 1.30505 1.25090 0.92226 0.86454 1.00136 1.21020 1.05150 1.04073 0.93417 1.19602 0.97590 1.01277 0.92131 1.41867 1.28391 1.25211 1.17817 0.71993 0.91676 0.91728 0.90055 0.92432 0.89827 0.80501 0.93477 0.91377 0.93090 0.88509 0.88395 0.82371 0.72534 0.80087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 9.02 71.98 0.65 -2.53 16 2 C 0.15 3.58 3.22 44.98 0.14 3.73 16 3 H 0.10 2.52 7.00 -2.39 -0.02 2.50 16 4 C -0.13 -3.66 5.02 30.67 0.15 -3.50 16 5 C 0.18 5.96 2.52 45.02 0.11 6.08 16 6 H 0.06 2.05 6.44 -2.39 -0.02 2.04 16 7 N -0.75 -32.95 4.92 -322.82 -1.59 -34.54 16 8 C -0.22 -11.98 10.41 84.03 0.87 -11.10 16 9 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 10 C -0.06 -3.53 5.50 84.86 0.47 -3.07 16 11 N -0.98 -61.49 13.97 21.65 0.30 -61.19 16 12 Si 0.95 44.87 27.73 68.60 1.90 46.77 16 13 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 14 H -0.25 -10.88 6.52 99.48 0.65 -10.23 16 15 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 16 C -0.14 -4.21 5.66 30.67 0.17 -4.03 16 17 C 0.09 2.04 4.87 86.36 0.42 2.47 16 18 N -0.59 -14.40 2.68 -799.87 -2.14 -16.54 16 19 C 0.59 16.26 7.61 86.39 0.66 16.92 16 20 O -0.56 -18.70 16.38 -4.45 -0.07 -18.77 16 21 C 0.00 -0.07 6.36 40.19 0.26 0.18 16 22 C -0.09 -2.38 10.66 22.57 0.24 -2.14 16 23 C -0.07 -1.77 8.20 22.90 0.19 -1.58 16 24 O -0.19 -3.82 10.68 -11.50 -0.12 -3.94 16 25 C 0.03 0.33 12.02 66.96 0.80 1.14 16 26 C -0.22 -3.01 10.89 22.20 0.24 -2.76 16 27 C 0.01 0.16 8.11 39.32 0.32 0.48 16 28 N -0.52 -10.34 4.81 -176.19 -0.85 -11.18 16 29 H 0.43 6.48 6.39 -92.71 -0.59 5.88 16 30 H 0.06 1.35 5.72 -2.39 -0.01 1.33 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.36 15.70 5.66 -92.71 -0.52 15.18 16 36 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.10 1.86 4.21 -2.38 -0.01 1.85 16 40 H 0.10 1.69 7.49 -2.39 -0.02 1.68 16 41 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 42 H 0.26 0.23 8.06 -2.91 -0.02 0.21 16 43 H 0.18 1.43 8.06 -2.92 -0.02 1.41 16 Total: -1.00 -74.02 344.29 3.02 -70.99 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -0.11 Total: 28.14 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.70 Total: 0.26 kcal Atomic # 7 Polarization: -119.18 SS G_CDS: -4.28 Total: -123.46 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.20 Total: -22.71 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.77 kcal Total: -74.02 3.02 -70.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.279 kcal (2) G-P(sol) polarization free energy of solvation -74.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds