Wall clock time and date at job start Tue Mar 31 2020 12:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.70175 * 2 1 4 4 C 1.53191 * 109.58768 * 120.36012 * 2 1 3 5 5 C 1.53034 * 109.31095 * 174.41761 * 4 2 1 6 6 H 1.08998 * 109.46300 * 58.64271 * 5 4 2 7 7 N 1.46508 * 109.45943 * 178.61126 * 5 4 2 8 8 C 1.36937 * 120.00168 * 204.99971 * 7 5 4 9 9 H 1.08000 * 119.99628 * 359.72923 * 8 7 5 10 10 C 1.38815 * 119.99783 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99864 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99647 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47128 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47059 * 120.00413 * 12 10 8 15 15 H 1.48504 * 109.47031 * 240.00329 * 12 10 8 16 16 C 1.53035 * 109.53926 * 298.63040 * 5 4 2 17 17 C 1.53195 * 109.31167 * 61.36927 * 16 5 4 18 18 N 1.46921 * 108.77341 * 305.36269 * 17 16 5 19 19 C 1.34780 * 120.63114 * 233.63281 * 18 17 16 20 20 O 1.21728 * 119.99679 * 187.03742 * 19 18 17 21 21 C 1.46493 * 119.99906 * 7.03310 * 19 18 17 22 22 C 1.37776 * 125.85782 * 206.36330 * 21 19 18 23 23 C 1.39927 * 107.68796 * 179.97438 * 22 21 19 24 24 O 1.35119 * 145.14224 * 180.02562 * 23 22 21 25 25 C 1.34386 * 109.62605 * 179.97438 * 24 23 22 26 26 C 1.34454 * 109.44611 * 0.02562 * 25 24 23 27 27 C 1.39138 * 107.40662 * 359.97438 * 23 22 21 28 28 N 1.37115 * 108.10393 * 359.75816 * 27 23 22 29 29 H 0.97006 * 125.73859 * 180.27496 * 28 27 23 30 30 H 1.08998 * 109.46618 * 292.22194 * 1 2 3 31 31 H 1.09001 * 109.47305 * 52.21796 * 1 2 3 32 32 H 1.08990 * 109.47324 * 172.22212 * 1 2 3 33 33 H 1.08997 * 109.49825 * 54.46324 * 4 2 1 34 34 H 1.09004 * 109.49432 * 294.36803 * 4 2 1 35 35 H 0.97003 * 119.99552 * 24.99783 * 7 5 4 36 36 H 0.97000 * 119.99183 * 179.97438 * 11 10 8 37 37 H 1.09006 * 109.49819 * 181.31960 * 16 5 4 38 38 H 1.08994 * 109.50073 * 301.41595 * 16 5 4 39 39 H 1.08999 * 109.58611 * 185.57286 * 17 16 5 40 40 H 1.09003 * 109.70024 * 65.22022 * 17 16 5 41 41 H 1.08000 * 126.15596 * 0.02562 * 22 21 19 42 42 H 1.08005 * 125.27390 * 179.97438 * 25 24 23 43 43 H 1.08004 * 126.41532 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5675 -0.8481 1.1699 6 1 4.0062 0.1471 1.0989 7 7 4.0653 -1.5159 2.3752 8 6 5.3498 -1.2990 2.7972 9 1 5.9973 -0.6390 2.2390 10 6 5.8212 -1.9314 3.9395 11 7 5.0337 -2.7399 4.6166 12 14 7.5733 -1.6349 4.5155 13 1 8.2468 -0.6921 3.5867 14 1 7.5535 -1.0548 5.8824 15 1 8.3126 -2.9227 4.5349 16 6 3.9568 -1.6659 -0.0636 17 6 3.4649 -0.9470 -1.3239 18 7 2.0225 -0.6996 -1.1946 19 6 1.1672 -1.1070 -2.1532 20 8 -0.0057 -0.7857 -2.0990 21 6 1.6491 -1.9363 -3.2605 22 6 1.0912 -2.0068 -4.5182 23 6 1.8506 -2.9101 -5.2702 24 8 1.9907 -3.5080 -6.4737 25 6 3.0514 -4.3327 -6.4473 26 6 3.6217 -4.2896 -5.2305 27 6 2.8709 -3.3803 -4.4494 28 7 2.7450 -2.7766 -3.2247 29 1 3.3263 -2.9176 -2.4610 30 1 -0.3632 0.3887 0.9513 31 1 -0.3634 0.6296 -0.8122 32 1 -0.3633 -1.0181 -0.1391 33 1 1.6030 -1.7253 1.2913 34 1 1.7661 -0.1669 2.1368 35 1 3.4849 -2.1118 2.8743 36 1 5.3633 -3.1820 5.4146 37 1 5.0411 -1.7698 -0.1039 38 1 3.4982 -2.6529 -0.0054 39 1 3.6517 -1.5718 -2.1973 40 1 3.9900 0.0018 -1.4343 41 1 0.2242 -1.4623 -4.8622 42 1 3.3923 -4.9370 -7.2750 43 1 4.4913 -4.8442 -4.9100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044626441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:23 Heat of formation + Delta-G solvation = 72.617851 kcal Electronic energy + Delta-G solvation = -26763.791304 eV Core-core repulsion = 23006.480186 eV Total energy + Delta-G solvation = -3757.311117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.11906 -40.84799 -39.05853 -37.50112 -34.66019 -33.04400 -32.43306 -32.05266 -30.75091 -29.54243 -28.34944 -27.05611 -24.63289 -23.80478 -23.14781 -21.69958 -21.45943 -20.80457 -20.26572 -19.25447 -17.99521 -17.26759 -17.08847 -16.44202 -16.14766 -15.85281 -15.03546 -14.90473 -14.70250 -14.13798 -14.00770 -13.83571 -13.67989 -13.64177 -13.29066 -12.99554 -12.86084 -12.71417 -12.18329 -12.12103 -11.89434 -11.69033 -11.47783 -11.00147 -10.93168 -10.89052 -10.56562 -10.30910 -10.25099 -9.97679 -9.82043 -9.29903 -9.02749 -8.73261 -8.60859 -8.01888 -7.08519 -5.86717 -3.16699 0.87359 2.04989 2.34378 2.51242 2.63690 3.01063 3.24513 3.35830 3.41577 3.44011 4.30721 4.42066 4.48554 4.73632 4.78771 5.05788 5.09557 5.12021 5.17790 5.27589 5.35340 5.38239 5.43368 5.50361 5.63008 5.69949 5.78072 5.89973 5.92092 6.02355 6.13620 6.13971 6.19151 6.29948 6.34498 6.39803 6.52040 6.62303 6.75798 6.89014 6.97125 7.11536 7.34883 7.60012 8.05609 8.31123 9.42771 9.98964 10.33656 11.35620 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015126 B = 0.003409 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.714993 B = 8212.522238 C = 9721.619022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.149 3.851 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.180 3.820 6 H 0.050 0.950 7 N -0.723 5.723 8 C -0.243 4.243 9 H 0.071 0.929 10 C -0.011 4.011 11 N -0.930 5.930 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.291 1.291 16 C -0.156 4.156 17 C 0.086 3.914 18 N -0.598 5.598 19 C 0.588 3.412 20 O -0.518 6.518 21 C 0.014 3.986 22 C -0.088 4.088 23 C -0.040 4.040 24 O -0.170 6.170 25 C 0.007 3.993 26 C -0.200 4.200 27 C 0.004 3.996 28 N -0.531 5.531 29 H 0.428 0.572 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.158 0.842 42 H 0.211 0.789 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.027 0.309 -19.820 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 H 0.093 0.907 4 C -0.175 4.175 5 C 0.070 3.930 6 H 0.068 0.932 7 N -0.363 5.363 8 C -0.374 4.374 9 H 0.089 0.911 10 C -0.208 4.208 11 N -0.578 5.578 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.218 1.218 15 H -0.219 1.219 16 C -0.197 4.197 17 C -0.038 4.038 18 N -0.331 5.331 19 C 0.375 3.625 20 O -0.395 6.395 21 C -0.098 4.098 22 C -0.116 4.116 23 C -0.091 4.091 24 O -0.068 6.068 25 C -0.061 4.061 26 C -0.221 4.221 27 C -0.109 4.109 28 N -0.142 5.142 29 H 0.274 0.726 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.176 0.824 42 H 0.228 0.772 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.576 0.601 -19.787 20.566 hybrid contribution 1.571 -0.511 0.986 1.924 sum -4.005 0.090 -18.801 19.223 Atomic orbital electron populations 1.22193 0.92651 1.03745 1.01001 1.21366 0.95577 0.95254 0.83162 0.90701 1.22320 0.97465 1.01094 0.96608 1.20128 0.91009 0.94999 0.86890 0.93205 1.42436 1.12963 1.54345 1.26563 1.19266 0.88998 1.22575 1.06577 0.91089 1.24761 0.98202 0.99692 0.98124 1.69673 1.35344 1.33379 1.19430 0.86140 0.84385 0.77311 0.78459 1.20529 1.21784 1.21859 1.22780 1.01981 0.99972 0.95016 1.22368 0.79978 1.01773 0.99713 1.48143 1.07287 1.57451 1.20248 1.16937 0.85538 0.79549 0.80429 1.90910 1.16410 1.57236 1.74952 1.20431 0.91788 1.00968 0.96623 1.19821 1.01530 1.00866 0.89370 1.19286 1.01480 1.03892 0.84465 1.84013 1.43325 1.48619 1.30800 1.24023 0.87575 0.95556 0.98927 1.20597 1.04287 1.04050 0.93181 1.19140 1.01349 1.02720 0.87686 1.42197 1.25035 1.35611 1.11335 0.72625 0.93290 0.90666 0.91643 0.91713 0.90234 0.78204 0.93463 0.90247 0.92247 0.90171 0.90567 0.82395 0.77225 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.62 37.16 0.28 -1.60 16 2 C 0.15 2.04 3.49 -67.59 -0.24 1.80 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C -0.14 -2.13 4.83 -26.61 -0.13 -2.26 16 5 C 0.18 3.24 2.73 -67.89 -0.19 3.05 16 6 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 7 N -0.72 -16.97 5.12 -53.39 -0.27 -17.24 16 8 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 11 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 12 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 13 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 C -0.16 -2.38 5.57 -26.61 -0.15 -2.53 16 17 C 0.09 1.05 5.87 -3.71 -0.02 1.03 16 18 N -0.60 -8.01 2.97 -166.81 -0.50 -8.50 16 19 C 0.59 8.37 7.39 -12.93 -0.10 8.28 16 20 O -0.52 -8.33 12.58 5.16 0.06 -8.27 16 21 C 0.01 0.19 6.40 -81.86 -0.52 -0.33 16 22 C -0.09 -1.13 10.68 -39.12 -0.42 -1.55 16 23 C -0.04 -0.51 8.20 -38.62 -0.32 -0.82 16 24 O -0.17 -1.94 10.68 3.19 0.03 -1.91 16 25 C 0.01 0.06 12.02 29.40 0.35 0.41 16 26 C -0.20 -1.87 10.89 -39.70 -0.43 -2.30 16 27 C 0.00 0.05 8.11 -83.95 -0.68 -0.63 16 28 N -0.53 -6.32 4.87 -7.04 -0.03 -6.35 16 29 H 0.43 4.61 6.34 -40.82 -0.26 4.35 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.06 6.68 -51.93 -0.35 0.72 16 32 H 0.06 0.99 6.82 -51.93 -0.35 0.63 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.38 9.78 7.80 -40.82 -0.32 9.46 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.88 3.49 -51.93 -0.18 0.70 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.16 1.80 8.06 -52.49 -0.42 1.37 16 42 H 0.21 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.15 1.08 8.06 -52.48 -0.42 0.65 16 LS Contribution 345.87 15.07 5.21 5.21 Total: -1.00 -31.42 345.87 -8.24 -39.66 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.65 Total: 11.76 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -2.80 Total: -4.41 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -0.08 Total: -58.63 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.10 Total: -10.18 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.42 -8.24 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.277 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds