Wall clock time and date at job start Tue Mar 31 2020 12:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.70175 * 2 1 4 4 C 1.53191 * 109.58768 * 120.36012 * 2 1 3 5 5 C 1.53034 * 109.31095 * 174.41761 * 4 2 1 6 6 H 1.08998 * 109.46300 * 58.64271 * 5 4 2 7 7 N 1.46508 * 109.45943 * 178.61126 * 5 4 2 8 8 C 1.36937 * 120.00168 * 204.99971 * 7 5 4 9 9 H 1.08000 * 119.99628 * 359.72923 * 8 7 5 10 10 C 1.38815 * 119.99783 * 179.97438 * 8 7 5 11 11 N 1.31618 * 119.99864 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99647 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47128 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47059 * 120.00413 * 12 10 8 15 15 H 1.48504 * 109.47031 * 240.00329 * 12 10 8 16 16 C 1.53035 * 109.53926 * 298.63040 * 5 4 2 17 17 C 1.53195 * 109.31167 * 61.36927 * 16 5 4 18 18 N 1.46921 * 108.77341 * 305.36269 * 17 16 5 19 19 C 1.34780 * 120.63114 * 233.63281 * 18 17 16 20 20 O 1.21728 * 119.99679 * 187.03742 * 19 18 17 21 21 C 1.46493 * 119.99906 * 7.03310 * 19 18 17 22 22 C 1.37776 * 125.85782 * 206.36330 * 21 19 18 23 23 C 1.39927 * 107.68796 * 179.97438 * 22 21 19 24 24 O 1.35119 * 145.14224 * 180.02562 * 23 22 21 25 25 C 1.34386 * 109.62605 * 179.97438 * 24 23 22 26 26 C 1.34454 * 109.44611 * 0.02562 * 25 24 23 27 27 C 1.39138 * 107.40662 * 359.97438 * 23 22 21 28 28 N 1.37115 * 108.10393 * 359.75816 * 27 23 22 29 29 H 0.97006 * 125.73859 * 180.27496 * 28 27 23 30 30 H 1.08998 * 109.46618 * 292.22194 * 1 2 3 31 31 H 1.09001 * 109.47305 * 52.21796 * 1 2 3 32 32 H 1.08990 * 109.47324 * 172.22212 * 1 2 3 33 33 H 1.08997 * 109.49825 * 54.46324 * 4 2 1 34 34 H 1.09004 * 109.49432 * 294.36803 * 4 2 1 35 35 H 0.97003 * 119.99552 * 24.99783 * 7 5 4 36 36 H 0.97000 * 119.99183 * 179.97438 * 11 10 8 37 37 H 1.09006 * 109.49819 * 181.31960 * 16 5 4 38 38 H 1.08994 * 109.50073 * 301.41595 * 16 5 4 39 39 H 1.08999 * 109.58611 * 185.57286 * 17 16 5 40 40 H 1.09003 * 109.70024 * 65.22022 * 17 16 5 41 41 H 1.08000 * 126.15596 * 0.02562 * 22 21 19 42 42 H 1.08005 * 125.27390 * 179.97438 * 25 24 23 43 43 H 1.08004 * 126.41532 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0436 -0.7295 1.2453 5 6 3.5675 -0.8481 1.1699 6 1 4.0062 0.1471 1.0989 7 7 4.0653 -1.5159 2.3752 8 6 5.3498 -1.2990 2.7972 9 1 5.9973 -0.6390 2.2390 10 6 5.8212 -1.9314 3.9395 11 7 5.0337 -2.7399 4.6166 12 14 7.5733 -1.6349 4.5155 13 1 8.2468 -0.6921 3.5867 14 1 7.5535 -1.0548 5.8824 15 1 8.3126 -2.9227 4.5349 16 6 3.9568 -1.6659 -0.0636 17 6 3.4649 -0.9470 -1.3239 18 7 2.0225 -0.6996 -1.1946 19 6 1.1672 -1.1070 -2.1532 20 8 -0.0057 -0.7857 -2.0990 21 6 1.6491 -1.9363 -3.2605 22 6 1.0912 -2.0068 -4.5182 23 6 1.8506 -2.9101 -5.2702 24 8 1.9907 -3.5080 -6.4737 25 6 3.0514 -4.3327 -6.4473 26 6 3.6217 -4.2896 -5.2305 27 6 2.8709 -3.3803 -4.4494 28 7 2.7450 -2.7766 -3.2247 29 1 3.3263 -2.9176 -2.4610 30 1 -0.3632 0.3887 0.9513 31 1 -0.3634 0.6296 -0.8122 32 1 -0.3633 -1.0181 -0.1391 33 1 1.6030 -1.7253 1.2913 34 1 1.7661 -0.1669 2.1368 35 1 3.4849 -2.1118 2.8743 36 1 5.3633 -3.1820 5.4146 37 1 5.0411 -1.7698 -0.1039 38 1 3.4982 -2.6529 -0.0054 39 1 3.6517 -1.5718 -2.1973 40 1 3.9900 0.0018 -1.4343 41 1 0.2242 -1.4623 -4.8622 42 1 3.3923 -4.9370 -7.2750 43 1 4.4913 -4.8442 -4.9100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044626441.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:22 Heat of formation + Delta-G solvation = 52.838188 kcal Electronic energy + Delta-G solvation = -26764.649014 eV Core-core repulsion = 23006.480186 eV Total energy + Delta-G solvation = -3758.168828 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.95995 -41.90654 -40.03747 -38.78097 -36.26513 -34.19528 -33.74312 -33.25346 -31.68133 -31.14385 -29.37804 -28.28111 -26.12587 -25.03115 -24.50239 -22.65608 -22.51814 -21.69450 -21.58394 -20.35901 -19.18590 -18.81911 -18.12433 -17.40220 -17.15138 -16.82285 -16.75287 -16.07609 -15.75095 -15.51658 -15.32553 -15.14081 -15.03780 -14.56086 -14.44597 -14.30465 -13.90711 -13.66489 -13.45153 -13.34057 -13.09261 -12.91522 -12.81163 -12.66664 -12.63321 -12.13067 -12.06497 -12.00223 -11.73297 -11.43253 -11.06336 -10.93327 -10.45783 -9.76324 -9.63325 -9.02958 -8.87941 -7.94447 -5.23312 -0.03028 1.16765 1.47828 1.48599 1.49472 1.57992 1.64396 1.68479 2.05141 2.26493 2.55643 3.32312 3.38660 3.63976 3.68884 3.74339 3.88664 3.96087 4.00779 4.17677 4.26121 4.31407 4.44625 4.49153 4.54766 4.64218 4.67797 4.71337 4.76512 4.81388 4.92385 5.00501 5.04008 5.12538 5.21920 5.36971 5.43307 5.43693 5.52576 5.58243 5.62381 6.12057 6.21227 6.27132 6.30873 6.95449 7.33700 8.08548 8.31433 9.29168 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015126 B = 0.003409 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.714993 B = 8212.522238 C = 9721.619022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.091 0.909 4 C -0.124 4.124 5 C 0.174 3.826 6 H 0.052 0.948 7 N -0.736 5.736 8 C -0.234 4.234 9 H 0.080 0.920 10 C -0.076 4.076 11 N -0.971 5.971 12 Si 0.969 3.031 13 H -0.263 1.263 14 H -0.298 1.298 15 H -0.296 1.296 16 C -0.144 4.144 17 C 0.096 3.904 18 N -0.598 5.598 19 C 0.589 3.411 20 O -0.541 6.541 21 C -0.006 4.006 22 C -0.090 4.090 23 C -0.070 4.070 24 O -0.183 6.183 25 C 0.030 3.970 26 C -0.219 4.219 27 C 0.002 3.998 28 N -0.529 5.529 29 H 0.431 0.569 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.371 0.629 36 H 0.249 0.751 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.164 0.836 42 H 0.260 0.740 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 0.477 -22.100 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.051 3.949 3 H 0.109 0.891 4 C -0.163 4.163 5 C 0.066 3.934 6 H 0.070 0.930 7 N -0.375 5.375 8 C -0.366 4.366 9 H 0.098 0.902 10 C -0.268 4.268 11 N -0.622 5.622 12 Si 0.798 3.202 13 H -0.187 1.187 14 H -0.225 1.225 15 H -0.224 1.224 16 C -0.185 4.185 17 C -0.028 4.028 18 N -0.330 5.330 19 C 0.378 3.622 20 O -0.420 6.420 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.122 4.122 24 O -0.081 6.081 25 C -0.037 4.037 26 C -0.240 4.240 27 C -0.112 4.112 28 N -0.140 5.140 29 H 0.278 0.722 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.202 0.798 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.181 0.819 42 H 0.276 0.724 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.356 0.808 -22.116 22.555 hybrid contribution 1.162 -0.605 1.535 2.018 sum -3.194 0.204 -20.580 20.828 Atomic orbital electron populations 1.22063 0.92435 1.02583 1.01521 1.21328 0.95655 0.95665 0.82273 0.89071 1.22173 0.95784 1.00684 0.97693 1.20377 0.92292 0.94823 0.85926 0.93034 1.42647 1.12123 1.54528 1.28240 1.19659 0.89980 1.21072 1.05865 0.90191 1.25526 1.01866 1.00488 0.98962 1.69827 1.37084 1.35234 1.20018 0.85138 0.80289 0.77023 0.77706 1.18730 1.22505 1.22382 1.22528 1.01545 0.99320 0.95065 1.22328 0.79310 1.02520 0.98601 1.48149 1.07630 1.57263 1.20004 1.17053 0.85227 0.79304 0.80618 1.90895 1.17298 1.58158 1.75635 1.20207 0.92940 1.02136 0.96471 1.19995 1.01548 1.00708 0.89504 1.19417 1.02323 1.05001 0.85418 1.84023 1.44633 1.49190 1.30289 1.25060 0.85313 0.93511 0.99800 1.21017 1.05396 1.04384 0.93253 1.19655 1.01459 1.02630 0.87422 1.42111 1.24777 1.35498 1.11586 0.72245 0.92031 0.90992 0.93446 0.92949 0.90607 0.79781 0.94200 0.90800 0.93128 0.88483 0.88945 0.81850 0.72438 0.80517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 7.62 71.98 0.55 -2.88 16 2 C 0.15 4.03 3.49 44.97 0.16 4.19 16 3 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.12 -3.85 4.83 30.67 0.15 -3.70 16 5 C 0.17 6.14 2.73 45.01 0.12 6.27 16 6 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 7 N -0.74 -34.75 5.12 -322.81 -1.65 -36.40 16 8 C -0.23 -12.20 9.93 84.03 0.83 -11.37 16 9 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 10 C -0.08 -4.22 5.50 84.86 0.47 -3.75 16 11 N -0.97 -58.03 13.06 21.65 0.28 -57.75 16 12 Si 0.97 44.53 29.55 68.60 2.03 46.56 16 13 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 14 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 15 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 16 C -0.14 -4.24 5.57 30.67 0.17 -4.07 16 17 C 0.10 2.19 5.87 86.36 0.51 2.69 16 18 N -0.60 -15.36 2.97 -799.87 -2.38 -17.74 16 19 C 0.59 16.49 7.39 86.39 0.64 17.13 16 20 O -0.54 -17.38 12.58 -4.44 -0.06 -17.44 16 21 C -0.01 -0.14 6.40 40.19 0.26 0.11 16 22 C -0.09 -2.27 10.68 22.57 0.24 -2.03 16 23 C -0.07 -1.73 8.20 22.90 0.19 -1.54 16 24 O -0.18 -3.82 10.68 -11.51 -0.12 -3.94 16 25 C 0.03 0.38 12.02 66.95 0.80 1.19 16 26 C -0.22 -3.48 10.89 22.19 0.24 -3.24 16 27 C 0.00 0.04 8.11 39.32 0.32 0.36 16 28 N -0.53 -11.99 4.87 -176.19 -0.86 -12.85 16 29 H 0.43 8.76 6.34 -92.70 -0.59 8.17 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.98 6.68 -2.39 -0.02 1.97 16 32 H 0.05 1.43 6.82 -2.39 -0.02 1.42 16 33 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.37 19.31 7.80 -92.71 -0.72 18.59 16 36 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 37 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 1.96 3.49 -2.39 -0.01 1.95 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 42 H 0.26 0.42 8.06 -2.91 -0.02 0.39 16 43 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -68.60 345.87 2.64 -65.96 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.25 Total: 34.24 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 5.64 Total: -0.64 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -4.61 Total: -124.74 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.18 Total: -21.38 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -68.60 2.64 -65.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626441.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.802 kcal (2) G-P(sol) polarization free energy of solvation -68.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds