Wall clock time and date at job start Tue Mar 31 2020 12:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.70224 * 2 1 4 4 C 1.53187 * 109.58910 * 120.35835 * 2 1 3 5 5 C 1.53045 * 109.31344 * 65.15024 * 4 2 1 6 6 H 1.08998 * 109.44702 * 301.35523 * 5 4 2 7 7 N 1.46496 * 109.46203 * 181.38452 * 5 4 2 8 8 C 1.36939 * 119.99827 * 154.93146 * 7 5 4 9 9 H 1.07997 * 119.99945 * 359.73155 * 8 7 5 10 10 C 1.38811 * 119.99889 * 179.72342 * 8 7 5 11 11 N 1.31619 * 120.00314 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 120.00261 * 0.02562 * 10 8 7 13 13 H 1.48505 * 109.46873 * 89.99359 * 12 10 8 14 14 H 1.48495 * 109.47504 * 209.99706 * 12 10 8 15 15 H 1.48506 * 109.46794 * 330.00064 * 12 10 8 16 16 C 1.53046 * 109.53409 * 61.36548 * 5 4 2 17 17 C 1.53191 * 109.31547 * 298.63340 * 16 5 4 18 18 N 1.46930 * 109.58500 * 239.64987 * 2 1 3 19 19 C 1.34774 * 120.62894 * 113.80186 * 18 2 1 20 20 O 1.21726 * 120.00313 * 359.85845 * 19 18 2 21 21 C 1.46505 * 119.99480 * 179.86652 * 19 18 2 22 22 C 1.37781 * 125.85027 * 209.24231 * 21 19 18 23 23 C 1.39934 * 107.68074 * 179.87883 * 22 21 19 24 24 O 1.35128 * 145.13472 * 179.97438 * 23 22 21 25 25 C 1.34382 * 109.61913 * 180.43758 * 24 23 22 26 26 C 1.34463 * 109.45172 * 359.97438 * 25 24 23 27 27 C 1.39139 * 107.40867 * 0.38011 * 23 22 21 28 28 N 1.37109 * 108.10492 * 359.76801 * 27 23 22 29 29 H 0.96999 * 125.73962 * 180.02562 * 28 27 23 30 30 H 1.08997 * 109.46599 * 180.35239 * 1 2 3 31 31 H 1.09003 * 109.46620 * 300.35210 * 1 2 3 32 32 H 1.08996 * 109.46797 * 60.35166 * 1 2 3 33 33 H 1.09001 * 109.49983 * 305.19980 * 4 2 1 34 34 H 1.09004 * 109.50050 * 185.10069 * 4 2 1 35 35 H 0.96998 * 119.99803 * 334.65780 * 7 5 4 36 36 H 0.96992 * 120.00407 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.49855 * 58.59199 * 16 5 4 38 38 H 1.09002 * 109.49557 * 178.68640 * 16 5 4 39 39 H 1.08998 * 109.59012 * 174.42340 * 17 16 5 40 40 H 1.08996 * 109.58690 * 294.70829 * 17 16 5 41 41 H 1.07993 * 126.16096 * 0.02562 * 22 21 19 42 42 H 1.07998 * 125.27261 * 180.02562 * 25 24 23 43 43 H 1.07994 * 126.41811 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 1.6415 -2.2042 1.1700 6 1 0.5566 -2.2813 1.0991 7 7 2.1024 -2.8979 2.3752 8 6 1.4642 -4.0333 2.7979 9 1 0.6183 -4.4148 2.2454 10 6 1.9045 -4.6939 3.9366 11 7 1.2908 -5.7849 4.3433 12 14 3.3673 -4.0337 4.8927 13 1 2.8924 -3.0826 5.9296 14 1 4.0820 -5.1604 5.5444 15 1 4.2902 -3.3330 3.9638 16 6 2.2801 -2.8464 -0.0637 17 6 1.7692 -2.1410 -1.3239 18 7 2.0225 -0.6995 -1.1946 19 6 2.6937 -0.0314 -2.1536 20 8 2.8947 1.1634 -2.0361 21 6 3.1811 -0.7433 -3.3377 22 6 4.2929 -0.4087 -4.0796 23 6 4.4073 -1.3403 -5.1174 24 8 5.1319 -1.7175 -6.1939 25 6 4.5753 -2.8048 -6.7539 26 6 3.4813 -3.1575 -6.0563 27 6 3.3466 -2.2324 -4.9949 28 7 2.6016 -1.8615 -3.9053 29 1 1.8023 -2.3091 -3.5865 30 1 -0.3632 -1.0277 0.0063 31 1 -0.3633 0.5193 0.8869 32 1 -0.3633 0.5083 -0.8931 33 1 1.6076 -0.2785 2.1368 34 1 3.1298 -0.6504 1.2912 35 1 2.8622 -2.5552 2.8713 36 1 1.5982 -6.2463 5.1392 37 1 3.3640 -2.7474 -0.0055 38 1 2.0123 -3.9022 -0.1040 39 1 2.2944 -2.5273 -2.1974 40 1 0.6992 -2.3177 -1.4332 41 1 4.9577 0.4214 -3.8923 42 1 4.9493 -3.3166 -7.6283 43 1 2.8278 -3.9912 -6.2668 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044626442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:27 Heat of formation + Delta-G solvation = 61.886512 kcal Electronic energy + Delta-G solvation = -26748.312370 eV Core-core repulsion = 22990.535907 eV Total energy + Delta-G solvation = -3757.776463 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.15877 -40.80080 -39.11057 -37.69509 -34.83454 -32.90839 -32.48631 -31.96205 -30.78601 -30.01244 -28.45128 -27.54221 -24.69332 -23.81456 -23.11116 -21.80390 -21.32372 -20.92994 -20.41756 -19.02635 -18.03328 -17.63342 -17.27461 -16.49113 -16.08205 -15.76766 -15.28771 -15.12229 -14.61099 -14.14232 -13.92566 -13.82479 -13.77264 -13.70616 -13.34851 -13.02439 -12.98327 -12.85823 -12.58557 -12.13600 -11.98223 -11.84880 -11.52401 -11.13642 -11.03287 -10.93383 -10.64120 -10.32794 -10.27427 -10.13818 -9.84025 -9.66092 -9.01342 -8.78310 -8.76897 -8.06137 -7.36452 -5.84858 -3.21171 0.83868 2.00892 2.29179 2.46750 2.56395 2.91779 3.19260 3.32913 3.36281 3.41264 4.25127 4.36795 4.52634 4.68802 4.74437 4.91525 4.99524 5.06310 5.07275 5.20617 5.26681 5.30484 5.35818 5.45819 5.54695 5.60465 5.62498 5.69401 5.86383 5.88192 5.93221 6.08489 6.09420 6.14165 6.25242 6.26419 6.36007 6.47873 6.68040 6.83371 6.92585 7.06107 7.25571 7.89733 7.95490 8.34102 9.12040 9.84981 10.04379 11.33206 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016007 B = 0.003387 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.856122 B = 8265.450165 C = 9147.851800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.101 0.899 4 C -0.138 4.138 5 C 0.184 3.816 6 H 0.061 0.939 7 N -0.747 5.747 8 C -0.247 4.247 9 H 0.090 0.910 10 C 0.007 3.993 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.283 1.283 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.150 4.150 17 C 0.084 3.916 18 N -0.595 5.595 19 C 0.589 3.411 20 O -0.528 6.528 21 C 0.017 3.983 22 C -0.087 4.087 23 C -0.038 4.038 24 O -0.169 6.169 25 C 0.009 3.991 26 C -0.200 4.200 27 C 0.005 3.995 28 N -0.532 5.532 29 H 0.425 0.575 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.361 0.639 36 H 0.260 0.740 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.159 0.841 42 H 0.212 0.788 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.263 8.283 -20.598 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.119 0.881 4 C -0.177 4.177 5 C 0.074 3.926 6 H 0.079 0.921 7 N -0.389 5.389 8 C -0.376 4.376 9 H 0.108 0.892 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.203 1.203 16 C -0.191 4.191 17 C -0.039 4.039 18 N -0.327 5.327 19 C 0.377 3.623 20 O -0.404 6.404 21 C -0.095 4.095 22 C -0.114 4.114 23 C -0.090 4.090 24 O -0.067 6.067 25 C -0.059 4.059 26 C -0.222 4.222 27 C -0.108 4.108 28 N -0.141 5.141 29 H 0.269 0.731 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.083 0.917 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.176 0.824 42 H 0.228 0.772 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.305 8.814 -20.471 22.407 hybrid contribution 0.583 -0.377 0.841 1.090 sum 2.887 8.437 -19.631 21.561 Atomic orbital electron populations 1.22163 0.94597 1.02991 1.02266 1.21246 0.94266 0.97178 0.83248 0.88144 1.22276 1.01476 0.97210 0.96780 1.20169 0.97410 0.88819 0.86212 0.92112 1.42795 1.37253 1.30707 1.28139 1.19040 1.10967 0.99985 1.07648 0.89213 1.24669 0.98880 0.97166 0.98221 1.69692 1.42627 1.19418 1.26251 0.86567 0.83489 0.78167 0.80384 1.21008 1.21729 1.20336 1.22638 1.01287 1.00841 0.94317 1.22339 1.01203 0.79666 1.00735 1.48180 1.54658 1.09436 1.20463 1.16908 0.78040 0.86146 0.81243 1.90854 1.57483 1.13558 1.78552 1.20216 0.98434 0.91647 0.99220 1.19832 0.98881 1.00162 0.92568 1.19268 0.94631 1.01274 0.93796 1.84023 1.47268 1.39920 1.35457 1.24038 0.94171 0.88214 0.99506 1.20571 1.02276 1.02867 0.96455 1.19101 0.96286 1.00954 0.94476 1.41998 1.25007 1.24362 1.22748 0.73058 0.91513 0.90968 0.92675 0.90154 0.91734 0.80593 0.92985 0.92020 0.90037 0.89973 0.90774 0.82381 0.77198 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.03 37.16 0.34 -1.50 16 2 C 0.14 1.86 3.21 -67.60 -0.22 1.64 16 3 H 0.10 1.36 7.00 -51.93 -0.36 1.00 16 4 C -0.14 -2.04 5.02 -26.61 -0.13 -2.18 16 5 C 0.18 3.17 2.53 -67.89 -0.17 3.00 16 6 H 0.06 1.07 6.43 -51.93 -0.33 0.74 16 7 N -0.75 -16.63 4.92 -53.38 -0.26 -16.90 16 8 C -0.25 -6.60 10.41 -15.06 -0.16 -6.76 16 9 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 10 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -28.50 13.97 55.49 0.78 -27.73 16 12 Si 0.88 21.65 27.74 -169.99 -4.71 16.93 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 16 C -0.15 -2.31 5.66 -26.61 -0.15 -2.46 16 17 C 0.08 0.99 5.12 -3.71 -0.02 0.97 16 18 N -0.59 -7.65 2.68 -166.81 -0.45 -8.09 16 19 C 0.59 8.30 7.62 -12.93 -0.10 8.20 16 20 O -0.53 -8.83 16.40 5.17 0.08 -8.74 16 21 C 0.02 0.22 6.34 -81.86 -0.52 -0.30 16 22 C -0.09 -1.12 10.70 -39.11 -0.42 -1.53 16 23 C -0.04 -0.48 8.20 -38.61 -0.32 -0.80 16 24 O -0.17 -1.91 10.68 3.17 0.03 -1.87 16 25 C 0.01 0.07 12.02 29.40 0.35 0.42 16 26 C -0.20 -1.74 10.89 -39.70 -0.43 -2.17 16 27 C 0.00 0.05 8.11 -83.95 -0.68 -0.63 16 28 N -0.53 -5.74 4.80 -7.04 -0.03 -5.77 16 29 H 0.43 3.66 6.48 -40.82 -0.26 3.39 16 30 H 0.07 0.77 5.73 -51.93 -0.30 0.48 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.36 8.08 5.66 -40.82 -0.23 7.85 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.08 0.87 3.89 -51.93 -0.20 0.67 16 40 H 0.07 0.76 7.51 -51.93 -0.39 0.37 16 41 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.21 0.65 8.06 -52.49 -0.42 0.22 16 43 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -33.46 344.35 -7.57 -41.03 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -5.48 Total: 9.95 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -2.72 Total: -3.99 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.03 Total: -58.49 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.12 Total: -10.62 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.46 -7.57 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.919 kcal (2) G-P(sol) polarization free energy of solvation -33.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds