Wall clock time and date at job start Tue Mar 31 2020 12:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.70224 * 2 1 4 4 C 1.53187 * 109.58910 * 120.35835 * 2 1 3 5 5 C 1.53045 * 109.31344 * 65.15024 * 4 2 1 6 6 H 1.08998 * 109.44702 * 301.35523 * 5 4 2 7 7 N 1.46496 * 109.46203 * 181.38452 * 5 4 2 8 8 C 1.36939 * 119.99827 * 154.93146 * 7 5 4 9 9 H 1.07997 * 119.99945 * 359.73155 * 8 7 5 10 10 C 1.38811 * 119.99889 * 179.72342 * 8 7 5 11 11 N 1.31619 * 120.00314 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 120.00261 * 0.02562 * 10 8 7 13 13 H 1.48505 * 109.46873 * 89.99359 * 12 10 8 14 14 H 1.48495 * 109.47504 * 209.99706 * 12 10 8 15 15 H 1.48506 * 109.46794 * 330.00064 * 12 10 8 16 16 C 1.53046 * 109.53409 * 61.36548 * 5 4 2 17 17 C 1.53191 * 109.31547 * 298.63340 * 16 5 4 18 18 N 1.46930 * 109.58500 * 239.64987 * 2 1 3 19 19 C 1.34774 * 120.62894 * 113.80186 * 18 2 1 20 20 O 1.21726 * 120.00313 * 359.85845 * 19 18 2 21 21 C 1.46505 * 119.99480 * 179.86652 * 19 18 2 22 22 C 1.37781 * 125.85027 * 209.24231 * 21 19 18 23 23 C 1.39934 * 107.68074 * 179.87883 * 22 21 19 24 24 O 1.35128 * 145.13472 * 179.97438 * 23 22 21 25 25 C 1.34382 * 109.61913 * 180.43758 * 24 23 22 26 26 C 1.34463 * 109.45172 * 359.97438 * 25 24 23 27 27 C 1.39139 * 107.40867 * 0.38011 * 23 22 21 28 28 N 1.37109 * 108.10492 * 359.76801 * 27 23 22 29 29 H 0.96999 * 125.73962 * 180.02562 * 28 27 23 30 30 H 1.08997 * 109.46599 * 180.35239 * 1 2 3 31 31 H 1.09003 * 109.46620 * 300.35210 * 1 2 3 32 32 H 1.08996 * 109.46797 * 60.35166 * 1 2 3 33 33 H 1.09001 * 109.49983 * 305.19980 * 4 2 1 34 34 H 1.09004 * 109.50050 * 185.10069 * 4 2 1 35 35 H 0.96998 * 119.99803 * 334.65780 * 7 5 4 36 36 H 0.96992 * 120.00407 * 180.02562 * 11 10 8 37 37 H 1.09001 * 109.49855 * 58.59199 * 16 5 4 38 38 H 1.09002 * 109.49557 * 178.68640 * 16 5 4 39 39 H 1.08998 * 109.59012 * 174.42340 * 17 16 5 40 40 H 1.08996 * 109.58690 * 294.70829 * 17 16 5 41 41 H 1.07993 * 126.16096 * 0.02562 * 22 21 19 42 42 H 1.07998 * 125.27261 * 180.02562 * 25 24 23 43 43 H 1.07994 * 126.41811 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 1.6415 -2.2042 1.1700 6 1 0.5566 -2.2813 1.0991 7 7 2.1024 -2.8979 2.3752 8 6 1.4642 -4.0333 2.7979 9 1 0.6183 -4.4148 2.2454 10 6 1.9045 -4.6939 3.9366 11 7 1.2908 -5.7849 4.3433 12 14 3.3673 -4.0337 4.8927 13 1 2.8924 -3.0826 5.9296 14 1 4.0820 -5.1604 5.5444 15 1 4.2902 -3.3330 3.9638 16 6 2.2801 -2.8464 -0.0637 17 6 1.7692 -2.1410 -1.3239 18 7 2.0225 -0.6995 -1.1946 19 6 2.6937 -0.0314 -2.1536 20 8 2.8947 1.1634 -2.0361 21 6 3.1811 -0.7433 -3.3377 22 6 4.2929 -0.4087 -4.0796 23 6 4.4073 -1.3403 -5.1174 24 8 5.1319 -1.7175 -6.1939 25 6 4.5753 -2.8048 -6.7539 26 6 3.4813 -3.1575 -6.0563 27 6 3.3466 -2.2324 -4.9949 28 7 2.6016 -1.8615 -3.9053 29 1 1.8023 -2.3091 -3.5865 30 1 -0.3632 -1.0277 0.0063 31 1 -0.3633 0.5193 0.8869 32 1 -0.3633 0.5083 -0.8931 33 1 1.6076 -0.2785 2.1368 34 1 3.1298 -0.6504 1.2912 35 1 2.8622 -2.5552 2.8713 36 1 1.5982 -6.2463 5.1392 37 1 3.3640 -2.7474 -0.0055 38 1 2.0123 -3.9022 -0.1040 39 1 2.2944 -2.5273 -2.1974 40 1 0.6992 -2.3177 -1.4332 41 1 4.9577 0.4214 -3.8923 42 1 4.9493 -3.3166 -7.6283 43 1 2.8278 -3.9912 -6.2668 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044626442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:26 Heat of formation + Delta-G solvation = 39.642611 kcal Electronic energy + Delta-G solvation = -26749.276938 eV Core-core repulsion = 22990.535907 eV Total energy + Delta-G solvation = -3758.741031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.96140 -41.82608 -40.07871 -38.91948 -36.44086 -34.14927 -33.62211 -33.25790 -31.68269 -31.62820 -29.39122 -28.66740 -26.03272 -24.91418 -24.56263 -22.83337 -22.51233 -21.76476 -21.49369 -20.31515 -19.45606 -18.67578 -18.43463 -17.36251 -17.13514 -16.83782 -16.66268 -16.27755 -15.88759 -15.55190 -15.23824 -14.99607 -14.74232 -14.65259 -14.61667 -14.40533 -14.16326 -13.87213 -13.66740 -13.48471 -13.07545 -12.99329 -12.85473 -12.67088 -12.49249 -12.22927 -12.07539 -11.96519 -11.79927 -11.32236 -11.16220 -11.06461 -10.93253 -9.88413 -9.64765 -9.31635 -8.88478 -8.02033 -5.34821 -0.03367 1.14996 1.38273 1.39442 1.46613 1.47941 1.58944 1.68760 2.01035 2.24779 2.48056 3.28975 3.30876 3.48080 3.64732 3.73274 3.85388 3.95130 3.98825 4.17134 4.19824 4.29489 4.41594 4.44064 4.48991 4.55587 4.65230 4.69030 4.73454 4.76301 4.96631 4.99377 5.01104 5.02416 5.18964 5.27315 5.40363 5.44628 5.51942 5.58522 5.78283 6.12729 6.17087 6.22262 6.31019 6.87488 7.08108 7.84881 8.02437 9.19217 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016007 B = 0.003387 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.856122 B = 8265.450165 C = 9147.851800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.147 3.853 3 H 0.098 0.902 4 C -0.129 4.129 5 C 0.177 3.823 6 H 0.061 0.939 7 N -0.752 5.752 8 C -0.223 4.223 9 H 0.064 0.936 10 C -0.062 4.062 11 N -0.983 5.983 12 Si 0.948 3.052 13 H -0.279 1.279 14 H -0.299 1.299 15 H -0.257 1.257 16 C -0.142 4.142 17 C 0.093 3.907 18 N -0.592 5.592 19 C 0.592 3.408 20 O -0.560 6.560 21 C -0.001 4.001 22 C -0.096 4.096 23 C -0.073 4.073 24 O -0.186 6.186 25 C 0.027 3.973 26 C -0.215 4.215 27 C 0.006 3.994 28 N -0.523 5.523 29 H 0.435 0.565 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.362 0.638 36 H 0.256 0.744 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.159 0.841 42 H 0.259 0.741 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.624 8.656 -22.622 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.044 3.956 3 H 0.116 0.884 4 C -0.168 4.168 5 C 0.070 3.930 6 H 0.079 0.921 7 N -0.395 5.395 8 C -0.354 4.354 9 H 0.082 0.918 10 C -0.253 4.253 11 N -0.634 5.634 12 Si 0.776 3.224 13 H -0.206 1.206 14 H -0.226 1.226 15 H -0.182 1.182 16 C -0.183 4.183 17 C -0.030 4.030 18 N -0.323 5.323 19 C 0.381 3.619 20 O -0.439 6.439 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.124 4.124 24 O -0.084 6.084 25 C -0.040 4.040 26 C -0.236 4.236 27 C -0.107 4.107 28 N -0.133 5.133 29 H 0.281 0.719 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.195 0.805 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.176 0.824 42 H 0.274 0.726 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.654 9.223 -22.530 24.489 hybrid contribution 0.458 -0.523 1.287 1.463 sum 3.112 8.700 -21.243 23.166 Atomic orbital electron populations 1.22120 0.92978 1.03108 1.03224 1.21217 0.95429 0.96641 0.82341 0.88443 1.22166 1.01132 0.95402 0.98119 1.20418 0.97480 0.90105 0.85037 0.92125 1.42857 1.37033 1.29754 1.29806 1.19028 1.09515 1.00414 1.06419 0.91782 1.25404 1.02167 0.97858 0.99893 1.69857 1.44917 1.21441 1.27144 0.85513 0.80410 0.77293 0.79142 1.20567 1.22643 1.18216 1.22434 1.00428 1.00224 0.95179 1.22328 1.02717 0.78657 0.99268 1.48188 1.54251 1.09681 1.20203 1.17025 0.77485 0.85796 0.81601 1.90831 1.58738 1.14930 1.79360 1.19948 0.99149 0.92800 0.99433 1.19986 0.99074 1.00399 0.92948 1.19405 0.95963 1.02201 0.94821 1.84027 1.47815 1.41258 1.35296 1.25082 0.93082 0.86298 0.99535 1.21016 1.03340 1.03497 0.95751 1.19597 0.95568 1.01043 0.94530 1.41885 1.25147 1.23759 1.22532 0.71931 0.91713 0.90022 0.91807 0.89635 0.92387 0.80495 0.93470 0.93174 0.91460 0.88450 0.88380 0.82370 0.72550 0.80088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.03 71.98 0.65 -2.55 16 2 C 0.15 3.57 3.21 44.97 0.14 3.72 16 3 H 0.10 2.52 7.00 -2.39 -0.02 2.50 16 4 C -0.13 -3.64 5.02 30.67 0.15 -3.48 16 5 C 0.18 5.95 2.53 45.02 0.11 6.06 16 6 H 0.06 2.06 6.43 -2.39 -0.02 2.05 16 7 N -0.75 -32.93 4.92 -322.81 -1.59 -34.52 16 8 C -0.22 -11.99 10.41 84.03 0.87 -11.12 16 9 H 0.06 3.73 8.06 -2.91 -0.02 3.70 16 10 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 11 N -0.98 -61.47 13.97 21.65 0.30 -61.17 16 12 Si 0.95 44.85 27.74 68.60 1.90 46.75 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 15 H -0.26 -11.15 6.52 99.48 0.65 -10.50 16 16 C -0.14 -4.23 5.66 30.67 0.17 -4.06 16 17 C 0.09 2.03 5.12 86.36 0.44 2.47 16 18 N -0.59 -14.38 2.68 -799.87 -2.14 -16.52 16 19 C 0.59 16.25 7.62 86.40 0.66 16.91 16 20 O -0.56 -18.61 16.40 -4.43 -0.07 -18.69 16 21 C 0.00 -0.03 6.34 40.20 0.25 0.23 16 22 C -0.10 -2.47 10.70 22.57 0.24 -2.23 16 23 C -0.07 -1.77 8.20 22.90 0.19 -1.58 16 24 O -0.19 -3.87 10.68 -11.56 -0.12 -4.00 16 25 C 0.03 0.33 12.02 66.96 0.80 1.13 16 26 C -0.22 -3.06 10.89 22.20 0.24 -2.82 16 27 C 0.01 0.13 8.11 39.32 0.32 0.45 16 28 N -0.52 -10.44 4.80 -176.18 -0.85 -11.29 16 29 H 0.43 6.52 6.48 -92.71 -0.60 5.92 16 30 H 0.06 1.36 5.73 -2.39 -0.01 1.34 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.36 15.69 5.66 -92.71 -0.53 15.17 16 36 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.10 1.87 3.89 -2.39 -0.01 1.86 16 40 H 0.10 1.73 7.51 -2.39 -0.02 1.71 16 41 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 42 H 0.26 0.31 8.06 -2.91 -0.02 0.28 16 43 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -74.01 344.35 3.04 -70.97 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.12 Total: 28.38 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 5.73 Total: 0.07 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -4.28 Total: -123.49 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.20 Total: -22.68 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.75 kcal Total: -74.01 3.04 -70.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044626442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.617 kcal (2) G-P(sol) polarization free energy of solvation -74.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds