Wall clock time and date at job start Tue Mar 31 2020 12:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70056 * 2 1 4 4 C 1.53186 * 109.58892 * 239.64243 * 2 1 3 5 5 C 1.53042 * 109.31541 * 185.57889 * 4 2 1 6 6 C 1.53042 * 109.53746 * 61.36077 * 5 4 2 7 7 H 1.08997 * 109.52565 * 58.60794 * 6 5 4 8 8 N 1.46504 * 109.49683 * 178.68642 * 6 5 4 9 9 C 1.34776 * 119.99631 * 204.56643 * 8 6 5 10 10 O 1.21723 * 120.00243 * 0.26739 * 9 8 6 11 11 C 1.46500 * 119.99916 * 180.27784 * 9 8 6 12 12 C 1.37769 * 125.86103 * 180.02562 * 11 9 8 13 13 C 1.39933 * 107.69119 * 179.97438 * 12 11 9 14 14 O 1.35115 * 145.14592 * 179.97438 * 13 12 11 15 15 C 1.34385 * 109.62821 * 180.02562 * 14 13 12 16 16 C 1.34466 * 109.44263 * 0.02562 * 15 14 13 17 17 C 1.39139 * 107.39918 * 0.02562 * 13 12 11 18 18 N 1.37106 * 108.11146 * 359.76827 * 17 13 12 19 19 H 0.97004 * 125.74093 * 180.22595 * 18 17 13 20 20 C 1.53192 * 109.31523 * 298.63574 * 6 5 4 21 21 N 1.46926 * 108.77120 * 54.63488 * 20 6 5 22 22 C 1.36945 * 120.62998 * 126.37073 * 21 20 6 23 23 H 1.07995 * 119.99832 * 209.02291 * 22 21 20 24 24 C 1.38811 * 119.99840 * 29.02353 * 22 21 20 25 25 N 1.31621 * 120.00013 * 15.03029 * 24 22 21 26 26 Si 1.86800 * 119.99855 * 195.02897 * 24 22 21 27 27 H 1.48498 * 109.47101 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.46912 * 119.99732 * 26 24 22 29 29 H 1.48499 * 109.46952 * 239.99624 * 26 24 22 30 30 H 1.08995 * 109.47113 * 299.64930 * 1 2 3 31 31 H 1.08994 * 109.47036 * 59.64965 * 1 2 3 32 32 H 1.08998 * 109.47107 * 179.64508 * 1 2 3 33 33 H 1.09008 * 109.49795 * 305.52771 * 4 2 1 34 34 H 1.08998 * 109.50159 * 65.59181 * 4 2 1 35 35 H 1.08997 * 109.45776 * 301.34372 * 5 4 2 36 36 H 1.08998 * 109.46403 * 181.37895 * 5 4 2 37 37 H 0.96996 * 119.99902 * 24.84026 * 8 6 5 38 38 H 1.08005 * 126.15759 * 359.97438 * 12 11 9 39 39 H 1.07999 * 125.27488 * 180.02562 * 15 14 13 40 40 H 1.08001 * 126.40770 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.58761 * 174.41789 * 20 6 5 42 42 H 1.08994 * 109.58963 * 294.70972 * 20 6 5 43 43 H 0.97005 * 119.99705 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 3.5675 -0.8480 -1.1700 6 6 3.9569 -1.6656 0.0637 7 1 3.4988 -2.6530 0.0058 8 7 5.4143 -1.8052 0.1178 9 6 5.9678 -2.8432 0.7755 10 8 5.2568 -3.6674 1.3204 11 6 7.4253 -2.9795 0.8348 12 6 8.1164 -3.9879 1.4701 13 6 9.4828 -3.7472 1.2878 14 8 10.7315 -4.1918 1.5496 15 6 11.6316 -3.3609 0.9970 16 6 10.9902 -2.3613 0.3667 17 6 9.6034 -2.5824 0.5363 18 7 8.3423 -2.1215 0.2590 19 1 8.1298 -1.3259 -0.2536 20 6 3.4651 -0.9468 1.3239 21 7 2.0226 -0.6994 1.1945 22 6 1.1536 -1.1133 2.1687 23 1 0.1360 -1.3679 1.9118 24 6 1.5807 -1.2056 3.4862 25 7 2.7037 -0.6272 3.8560 26 14 0.5618 -2.1508 4.7343 27 1 -0.6469 -2.7022 4.0709 28 1 1.3712 -3.2633 5.2934 29 1 0.1509 -1.2377 5.8311 30 1 -0.3633 0.5084 0.8931 31 1 -0.3633 0.5192 -0.8868 32 1 -0.3633 -1.0276 -0.0064 33 1 1.6030 -1.7254 -1.2912 34 1 1.7656 -0.1672 -2.1368 35 1 4.0061 0.1473 -1.0993 36 1 3.9379 -1.3450 -2.0667 37 1 5.9808 -1.1484 -0.3164 38 1 7.6818 -4.8153 2.0114 39 1 12.7039 -3.4780 1.0508 40 1 11.4481 -1.5431 -0.1693 41 1 3.6518 -1.5716 2.1973 42 1 3.9921 0.0010 1.4332 43 1 3.0024 -0.6920 4.7766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071546982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:58 Heat of formation + Delta-G solvation = 48.672872 kcal Electronic energy + Delta-G solvation = -26572.905101 eV Core-core repulsion = 22814.555652 eV Total energy + Delta-G solvation = -3758.349449 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.99551 -40.10311 -38.72187 -37.47021 -34.53812 -32.84784 -32.47120 -31.10688 -30.45075 -29.86675 -28.32882 -26.07067 -25.06310 -23.41323 -22.26981 -21.72413 -20.84398 -20.56683 -19.94160 -19.27247 -18.36122 -17.08721 -16.50830 -16.32448 -15.92063 -15.34710 -15.13232 -14.59803 -14.35917 -13.86080 -13.81711 -13.65736 -13.50488 -13.38891 -13.20463 -12.93124 -12.72903 -12.41373 -11.90787 -11.82104 -11.48628 -11.14655 -10.89386 -10.71366 -10.58772 -10.41201 -10.26876 -10.17484 -9.99731 -9.91249 -9.54901 -9.49216 -8.69074 -8.67086 -8.42250 -7.92638 -6.62426 -5.73600 -3.18418 0.97924 2.20547 2.40996 2.58510 2.83094 3.39958 3.45315 3.51721 3.52947 3.55911 4.45079 4.54247 4.69144 4.94703 5.16575 5.27952 5.33888 5.36595 5.40292 5.49004 5.54640 5.62858 5.74202 5.92920 6.03408 6.04970 6.22364 6.23437 6.26163 6.36155 6.41999 6.44344 6.51125 6.60137 6.68400 6.82756 7.02293 7.05440 7.10760 7.20004 7.29851 7.72498 7.76447 7.87764 8.42674 8.50942 9.24659 9.88862 10.43405 11.34546 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.003463 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.590247 B = 8084.361246 C = 9310.105295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.086 0.914 8 N -0.716 5.716 9 C 0.583 3.417 10 O -0.510 6.510 11 C 0.020 3.980 12 C -0.086 4.086 13 C -0.038 4.038 14 O -0.169 6.169 15 C 0.006 3.994 16 C -0.201 4.201 17 C 0.004 3.996 18 N -0.532 5.532 19 H 0.419 0.581 20 C 0.167 3.833 21 N -0.583 5.583 22 C -0.253 4.253 23 H 0.072 0.928 24 C 0.006 3.994 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.277 1.277 28 H -0.288 1.288 29 H -0.291 1.291 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.386 0.614 38 H 0.161 0.839 39 H 0.210 0.790 40 H 0.152 0.848 41 H 0.097 0.903 42 H 0.016 0.984 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.689 -0.593 -11.435 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.104 0.896 8 N -0.366 5.366 9 C 0.368 3.632 10 O -0.384 6.384 11 C -0.092 4.092 12 C -0.113 4.113 13 C -0.090 4.090 14 O -0.067 6.067 15 C -0.062 4.062 16 C -0.223 4.223 17 C -0.109 4.109 18 N -0.137 5.137 19 H 0.257 0.743 20 C 0.040 3.960 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.089 0.911 24 C -0.193 4.193 25 N -0.545 5.545 26 Si 0.730 3.270 27 H -0.202 1.202 28 H -0.214 1.214 29 H -0.218 1.218 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.219 0.781 38 H 0.178 0.822 39 H 0.227 0.773 40 H 0.170 0.830 41 H 0.115 0.885 42 H 0.034 0.966 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.154 -1.337 -10.764 17.832 hybrid contribution 0.059 0.573 0.131 0.591 sum 14.213 -0.764 -10.633 17.767 Atomic orbital electron populations 1.21800 0.95929 1.01433 1.00244 1.20493 0.93136 0.93526 0.87047 0.95776 1.22050 0.94113 1.01441 0.98980 1.21685 0.97620 0.99542 0.96608 1.22095 0.76886 1.01269 0.98550 0.89580 1.45974 1.09075 1.26466 1.55120 1.16793 0.84445 0.82331 0.79587 1.90930 1.60896 1.41986 1.44573 1.20544 0.89684 0.94071 1.04921 1.19925 0.85802 1.00943 1.04641 1.19300 0.86199 0.97008 1.06462 1.84017 1.12813 1.46467 1.63353 1.24006 0.94962 0.89928 0.97332 1.20530 0.88718 1.03670 1.09363 1.18999 0.87469 0.98419 1.05982 1.41158 1.02970 1.24039 1.45483 0.74291 1.21099 0.83636 0.96946 0.94338 1.44030 1.02578 1.64712 1.19311 1.19188 0.94714 1.38271 0.86114 0.91086 1.25078 0.97713 0.99414 0.97050 1.69998 1.23302 1.44340 1.16828 0.86256 0.79654 0.79649 0.81411 1.20214 1.21414 1.21822 0.91955 0.94347 0.92748 0.91954 0.92625 0.92325 0.93042 0.78113 0.82159 0.77321 0.83037 0.88471 0.96556 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.94 37.16 0.30 -2.22 16 2 C 0.16 3.30 3.50 -67.60 -0.24 3.06 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.08 5.37 -26.61 -0.14 -2.22 16 5 C -0.12 -1.79 5.35 -26.69 -0.14 -1.94 16 6 C 0.12 2.20 2.60 -67.81 -0.18 2.02 16 7 H 0.09 1.85 7.58 -51.93 -0.39 1.45 16 8 N -0.72 -11.26 5.08 -55.05 -0.28 -11.54 16 9 C 0.58 10.33 7.74 -12.93 -0.10 10.23 16 10 O -0.51 -11.31 16.53 5.17 0.09 -11.22 16 11 C 0.02 0.31 7.03 -81.86 -0.58 -0.27 16 12 C -0.09 -1.30 10.58 -39.12 -0.41 -1.72 16 13 C -0.04 -0.54 8.20 -38.61 -0.32 -0.85 16 14 O -0.17 -2.11 10.68 3.20 0.03 -2.08 16 15 C 0.01 0.05 12.02 29.40 0.35 0.40 16 16 C -0.20 -1.88 10.89 -39.69 -0.43 -2.31 16 17 C 0.00 0.05 8.11 -83.95 -0.68 -0.63 16 18 N -0.53 -6.26 6.08 -7.04 -0.04 -6.31 16 19 H 0.42 3.56 8.16 -40.82 -0.33 3.23 16 20 C 0.17 3.97 4.86 -3.71 -0.02 3.95 16 21 N -0.58 -14.31 2.99 -164.78 -0.49 -14.80 16 22 C -0.25 -6.88 8.60 -15.06 -0.13 -7.01 16 23 H 0.07 1.88 6.21 -52.49 -0.33 1.56 16 24 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16 25 N -0.90 -26.64 11.14 55.49 0.62 -26.02 16 26 Si 0.90 22.39 29.58 -169.99 -5.03 17.36 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H 0.06 1.25 7.62 -51.93 -0.40 0.85 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 1.02 7.44 -51.93 -0.39 0.64 16 33 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.39 4.58 7.69 -40.82 -0.31 4.27 16 38 H 0.16 2.34 8.06 -52.48 -0.42 1.92 16 39 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.10 2.75 6.06 -51.93 -0.31 2.44 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -34.19 351.39 -8.44 -42.63 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -5.83 Total: 6.11 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -2.80 Total: 0.58 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.20 Total: -58.67 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.12 Total: -13.30 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.19 -8.44 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071546982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.300 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds