Wall clock time and date at job start Tue Mar 31 2020 12:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70056 * 2 1 4 4 C 1.53186 * 109.58892 * 239.64243 * 2 1 3 5 5 C 1.53042 * 109.31541 * 185.57889 * 4 2 1 6 6 C 1.53042 * 109.53746 * 61.36077 * 5 4 2 7 7 H 1.08997 * 109.52565 * 58.60794 * 6 5 4 8 8 N 1.46504 * 109.49683 * 178.68642 * 6 5 4 9 9 C 1.34776 * 119.99631 * 204.56643 * 8 6 5 10 10 O 1.21723 * 120.00243 * 0.26739 * 9 8 6 11 11 C 1.46500 * 119.99916 * 180.27784 * 9 8 6 12 12 C 1.37769 * 125.86103 * 180.02562 * 11 9 8 13 13 C 1.39933 * 107.69119 * 179.97438 * 12 11 9 14 14 O 1.35115 * 145.14592 * 179.97438 * 13 12 11 15 15 C 1.34385 * 109.62821 * 180.02562 * 14 13 12 16 16 C 1.34466 * 109.44263 * 0.02562 * 15 14 13 17 17 C 1.39139 * 107.39918 * 0.02562 * 13 12 11 18 18 N 1.37106 * 108.11146 * 359.76827 * 17 13 12 19 19 H 0.97004 * 125.74093 * 180.22595 * 18 17 13 20 20 C 1.53192 * 109.31523 * 298.63574 * 6 5 4 21 21 N 1.46926 * 108.77120 * 54.63488 * 20 6 5 22 22 C 1.36945 * 120.62998 * 126.37073 * 21 20 6 23 23 H 1.07995 * 119.99832 * 209.02291 * 22 21 20 24 24 C 1.38811 * 119.99840 * 29.02353 * 22 21 20 25 25 N 1.31621 * 120.00013 * 15.03029 * 24 22 21 26 26 Si 1.86800 * 119.99855 * 195.02897 * 24 22 21 27 27 H 1.48498 * 109.47101 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.46912 * 119.99732 * 26 24 22 29 29 H 1.48499 * 109.46952 * 239.99624 * 26 24 22 30 30 H 1.08995 * 109.47113 * 299.64930 * 1 2 3 31 31 H 1.08994 * 109.47036 * 59.64965 * 1 2 3 32 32 H 1.08998 * 109.47107 * 179.64508 * 1 2 3 33 33 H 1.09008 * 109.49795 * 305.52771 * 4 2 1 34 34 H 1.08998 * 109.50159 * 65.59181 * 4 2 1 35 35 H 1.08997 * 109.45776 * 301.34372 * 5 4 2 36 36 H 1.08998 * 109.46403 * 181.37895 * 5 4 2 37 37 H 0.96996 * 119.99902 * 24.84026 * 8 6 5 38 38 H 1.08005 * 126.15759 * 359.97438 * 12 11 9 39 39 H 1.07999 * 125.27488 * 180.02562 * 15 14 13 40 40 H 1.08001 * 126.40770 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.58761 * 174.41789 * 20 6 5 42 42 H 1.08994 * 109.58963 * 294.70972 * 20 6 5 43 43 H 0.97005 * 119.99705 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 3.5675 -0.8480 -1.1700 6 6 3.9569 -1.6656 0.0637 7 1 3.4988 -2.6530 0.0058 8 7 5.4143 -1.8052 0.1178 9 6 5.9678 -2.8432 0.7755 10 8 5.2568 -3.6674 1.3204 11 6 7.4253 -2.9795 0.8348 12 6 8.1164 -3.9879 1.4701 13 6 9.4828 -3.7472 1.2878 14 8 10.7315 -4.1918 1.5496 15 6 11.6316 -3.3609 0.9970 16 6 10.9902 -2.3613 0.3667 17 6 9.6034 -2.5824 0.5363 18 7 8.3423 -2.1215 0.2590 19 1 8.1298 -1.3259 -0.2536 20 6 3.4651 -0.9468 1.3239 21 7 2.0226 -0.6994 1.1945 22 6 1.1536 -1.1133 2.1687 23 1 0.1360 -1.3679 1.9118 24 6 1.5807 -1.2056 3.4862 25 7 2.7037 -0.6272 3.8560 26 14 0.5618 -2.1508 4.7343 27 1 -0.6469 -2.7022 4.0709 28 1 1.3712 -3.2633 5.2934 29 1 0.1509 -1.2377 5.8311 30 1 -0.3633 0.5084 0.8931 31 1 -0.3633 0.5192 -0.8868 32 1 -0.3633 -1.0276 -0.0064 33 1 1.6030 -1.7254 -1.2912 34 1 1.7656 -0.1672 -2.1368 35 1 4.0061 0.1473 -1.0993 36 1 3.9379 -1.3450 -2.0667 37 1 5.9808 -1.1484 -0.3164 38 1 7.6818 -4.8153 2.0114 39 1 12.7039 -3.4780 1.0508 40 1 11.4481 -1.5431 -0.1693 41 1 3.6518 -1.5716 2.1973 42 1 3.9921 0.0010 1.4332 43 1 3.0024 -0.6920 4.7766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071546982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:58 Heat of formation + Delta-G solvation = 24.078435 kcal Electronic energy + Delta-G solvation = -26573.971596 eV Core-core repulsion = 22814.555652 eV Total energy + Delta-G solvation = -3759.415944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.92178 -41.36279 -40.00732 -39.01905 -36.13250 -34.68497 -33.34822 -32.50100 -31.77382 -31.54848 -29.40877 -27.72114 -26.79724 -24.68459 -23.89146 -22.68580 -22.17154 -21.72605 -21.37683 -20.77719 -19.40412 -18.36541 -18.11035 -17.47954 -17.27598 -16.84961 -16.47738 -16.07903 -15.80190 -15.53659 -15.24163 -15.04203 -14.83475 -14.61605 -14.47075 -14.23890 -14.09403 -13.66497 -13.51154 -13.09891 -12.79589 -12.77611 -12.72233 -12.56773 -12.28038 -12.12721 -11.99186 -11.70125 -11.50601 -11.20522 -11.12039 -11.07671 -10.55088 -10.22972 -9.66887 -8.90805 -8.62980 -7.85678 -5.31571 -0.07140 1.19933 1.40493 1.45371 1.47848 1.52933 1.69030 1.74818 2.20681 2.28872 2.50877 3.31351 3.58464 3.64944 3.77332 3.93493 3.96754 4.08269 4.23018 4.30898 4.37895 4.47479 4.59552 4.69273 4.71042 4.75749 4.78954 4.88122 5.00503 5.00909 5.06183 5.17085 5.25960 5.30849 5.36058 5.44644 5.54419 5.55479 5.61867 5.70717 5.78844 6.12969 6.31111 6.41092 6.50546 7.08177 7.16959 7.89937 8.38295 9.19470 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.003463 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.590247 B = 8084.361246 C = 9310.105295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.057 0.943 8 N -0.701 5.701 9 C 0.584 3.416 10 O -0.567 6.567 11 C -0.001 4.001 12 C -0.098 4.098 13 C -0.077 4.077 14 O -0.187 6.187 15 C 0.028 3.972 16 C -0.211 4.211 17 C 0.017 3.983 18 N -0.515 5.515 19 H 0.435 0.565 20 C 0.178 3.822 21 N -0.603 5.603 22 C -0.248 4.248 23 H 0.076 0.924 24 C -0.054 4.054 25 N -0.934 5.934 26 Si 0.955 3.045 27 H -0.262 1.262 28 H -0.301 1.301 29 H -0.289 1.289 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.409 0.591 38 H 0.149 0.851 39 H 0.262 0.738 40 H 0.188 0.812 41 H 0.044 0.956 42 H -0.001 1.001 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.552 0.602 -14.550 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.025 3.975 7 H 0.075 0.925 8 N -0.351 5.351 9 C 0.371 3.629 10 O -0.446 6.446 11 C -0.114 4.114 12 C -0.127 4.127 13 C -0.128 4.128 14 O -0.086 6.086 15 C -0.039 4.039 16 C -0.232 4.232 17 C -0.098 4.098 18 N -0.120 5.120 19 H 0.276 0.724 20 C 0.050 3.950 21 N -0.327 5.327 22 C -0.379 4.379 23 H 0.094 0.906 24 C -0.249 4.249 25 N -0.581 5.581 26 Si 0.784 3.216 27 H -0.186 1.186 28 H -0.229 1.229 29 H -0.216 1.216 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.245 0.755 38 H 0.167 0.833 39 H 0.277 0.723 40 H 0.205 0.795 41 H 0.062 0.938 42 H 0.017 0.983 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.007 -0.085 -13.957 21.237 hybrid contribution -0.357 0.218 1.061 1.141 sum 15.650 0.133 -12.896 20.279 Atomic orbital electron populations 1.21738 0.94780 1.01167 1.01075 1.20823 0.94296 0.93425 0.86698 0.95931 1.21957 0.94469 1.00982 0.98337 1.21660 0.97226 0.99982 0.95648 1.21630 0.78193 0.99622 0.98018 0.92517 1.45699 1.08243 1.26547 1.54639 1.17136 0.85452 0.81788 0.78480 1.90892 1.62532 1.44128 1.46998 1.19902 0.88459 0.95647 1.07356 1.19991 0.87219 1.00881 1.04564 1.19306 0.86428 0.98601 1.08483 1.84026 1.12600 1.47745 1.64183 1.25164 0.96401 0.88068 0.94262 1.21022 0.86769 1.05192 1.10250 1.19553 0.88600 0.97326 1.04287 1.40985 1.02338 1.23897 1.44829 0.72369 1.20781 0.83847 0.95373 0.94958 1.44325 1.02476 1.65635 1.20266 1.19522 0.95173 1.36474 0.86695 0.90640 1.25780 0.99001 1.01104 0.98993 1.70156 1.25077 1.46453 1.16414 0.85377 0.78666 0.78044 0.79516 1.18568 1.22882 1.21592 0.94352 0.90235 0.93546 0.92838 0.88447 0.90623 0.89412 0.75462 0.83284 0.72276 0.79508 0.93778 0.98319 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 7.94 71.98 0.57 -4.03 16 2 C 0.15 5.93 3.50 44.97 0.16 6.09 16 3 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -3.52 5.37 30.67 0.16 -3.36 16 5 C -0.11 -2.99 5.35 30.62 0.16 -2.83 16 6 C 0.13 4.98 2.60 45.07 0.12 5.10 16 7 H 0.06 2.52 7.58 -2.39 -0.02 2.50 16 8 N -0.70 -22.17 5.08 -446.28 -2.27 -24.44 16 9 C 0.58 21.77 7.74 86.40 0.67 22.44 16 10 O -0.57 -27.24 16.53 -4.42 -0.07 -27.32 16 11 C 0.00 -0.03 7.03 40.19 0.28 0.26 16 12 C -0.10 -3.17 10.58 22.57 0.24 -2.93 16 13 C -0.08 -2.18 8.20 22.90 0.19 -1.99 16 14 O -0.19 -4.41 10.68 -11.47 -0.12 -4.53 16 15 C 0.03 0.37 12.02 66.96 0.80 1.18 16 16 C -0.21 -3.13 10.89 22.20 0.24 -2.89 16 17 C 0.02 0.39 8.11 39.32 0.32 0.71 16 18 N -0.51 -11.55 6.08 -176.19 -1.07 -12.62 16 19 H 0.44 6.46 8.16 -92.71 -0.76 5.71 16 20 C 0.18 8.82 4.86 86.36 0.42 9.24 16 21 N -0.60 -30.27 2.99 -675.24 -2.02 -32.29 16 22 C -0.25 -13.89 8.60 84.03 0.72 -13.17 16 23 H 0.08 4.07 6.21 -2.91 -0.02 4.05 16 24 C -0.05 -3.17 4.96 84.86 0.42 -2.75 16 25 N -0.93 -58.40 11.14 21.65 0.24 -58.16 16 26 Si 0.95 47.94 29.58 68.60 2.03 49.97 16 27 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 28 H -0.30 -15.65 7.11 99.48 0.71 -14.94 16 29 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 30 H 0.04 1.51 7.62 -2.39 -0.02 1.49 16 31 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 1.69 7.44 -2.39 -0.02 1.67 16 33 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16 34 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.41 9.10 7.69 -92.71 -0.71 8.39 16 38 H 0.15 4.89 8.06 -2.91 -0.02 4.86 16 39 H 0.26 0.45 8.06 -2.91 -0.02 0.43 16 40 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.04 2.67 6.06 -2.39 -0.01 2.65 16 42 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 43 H 0.24 14.99 8.31 -92.70 -0.77 14.22 16 Total: -1.00 -82.27 351.39 1.79 -80.48 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -0.41 Total: 17.83 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 5.48 Total: 11.06 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -5.12 Total: -127.50 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.20 Total: -31.85 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -82.27 1.79 -80.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071546982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.560 kcal (2) G-P(sol) polarization free energy of solvation -82.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds