Wall clock time and date at job start Tue Mar 31 2020 12:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58799 * 2 1 4 4 C 1.53164 * 109.59043 * 239.56567 * 2 1 3 5 5 C 1.53041 * 109.33174 * 185.56843 * 4 2 1 6 6 C 1.53041 * 109.52064 * 61.37251 * 5 4 2 7 7 H 1.09006 * 109.49082 * 178.69110 * 6 5 4 8 8 N 1.46496 * 109.49787 * 58.59740 * 6 5 4 9 9 C 1.34775 * 120.00185 * 154.99455 * 8 6 5 10 10 O 1.21734 * 119.99913 * 0.02562 * 9 8 6 11 11 C 1.46496 * 120.00185 * 179.97438 * 9 8 6 12 12 C 1.37782 * 125.85515 * 180.02562 * 11 9 8 13 13 C 1.39941 * 107.68027 * 179.97438 * 12 11 9 14 14 O 1.35120 * 145.13673 * 180.02562 * 13 12 11 15 15 C 1.34374 * 109.62465 * 179.97438 * 14 13 12 16 16 C 1.34464 * 109.44494 * 359.97438 * 15 14 13 17 17 C 1.39134 * 107.40554 * 359.97438 * 13 12 11 18 18 N 1.37108 * 108.11223 * 359.77676 * 17 13 12 19 19 H 0.96991 * 125.74479 * 180.22351 * 18 17 13 20 20 C 1.53191 * 109.31761 * 298.64109 * 6 5 4 21 21 N 1.46924 * 109.58887 * 120.28490 * 2 1 3 22 22 C 1.36943 * 120.63047 * 353.37615 * 21 2 1 23 23 H 1.07994 * 119.99694 * 29.03344 * 22 21 2 24 24 C 1.38804 * 119.99860 * 209.04061 * 22 21 2 25 25 N 1.31617 * 120.00554 * 15.00542 * 24 22 21 26 26 Si 1.86804 * 119.99695 * 195.01258 * 24 22 21 27 27 H 1.48496 * 109.47404 * 89.99845 * 26 24 22 28 28 H 1.48509 * 109.46800 * 209.99626 * 26 24 22 29 29 H 1.48502 * 109.47190 * 329.99526 * 26 24 22 30 30 H 1.09004 * 109.47092 * 299.71657 * 1 2 3 31 31 H 1.09005 * 109.47173 * 59.71579 * 1 2 3 32 32 H 1.09001 * 109.47141 * 179.71731 * 1 2 3 33 33 H 1.09003 * 109.47698 * 65.62364 * 4 2 1 34 34 H 1.08998 * 109.50641 * 305.54009 * 4 2 1 35 35 H 1.09006 * 109.46056 * 301.36483 * 5 4 2 36 36 H 1.08993 * 109.46309 * 181.38908 * 5 4 2 37 37 H 0.96999 * 119.99997 * 334.99818 * 8 6 5 38 38 H 1.08001 * 126.16010 * 359.93946 * 12 11 9 39 39 H 1.07997 * 125.27789 * 180.02562 * 15 14 13 40 40 H 1.08006 * 126.41002 * 180.02562 * 16 15 14 41 41 H 1.08993 * 109.58865 * 174.42189 * 20 6 5 42 42 H 1.08998 * 109.58512 * 294.85100 * 20 6 5 43 43 H 0.96998 * 120.00355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2441 5 6 3.5675 -0.8494 -1.1692 6 6 3.9568 -1.6656 0.0655 7 1 5.0412 -1.7694 0.1057 8 7 3.3405 -2.9924 -0.0112 9 6 3.8970 -4.0327 0.6404 10 8 4.9116 -3.8697 1.2930 11 6 3.2804 -5.3593 0.5642 12 6 3.7443 -6.5015 1.1795 13 6 2.8701 -7.5447 0.8539 14 8 2.6041 -8.8595 1.0156 15 6 1.4895 -9.1812 0.3375 16 6 1.0079 -8.0866 -0.2772 17 6 1.8763 -7.0152 0.0368 18 7 2.1303 -5.6784 -0.1317 19 1 1.5943 -5.0612 -0.6536 20 6 3.4651 -0.9454 1.3249 21 7 2.0226 -0.6981 1.1953 22 6 1.1537 -1.1101 2.1703 23 1 0.1360 -1.3649 1.9142 24 6 1.5812 -1.2000 3.4879 25 7 2.7045 -0.6215 3.8564 26 14 0.5621 -2.1425 4.7380 27 1 0.9960 -3.5624 4.7610 28 1 0.7531 -1.5446 6.0840 29 1 -0.8729 -2.0694 4.3631 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5183 -0.8875 32 1 -0.3633 -1.0277 -0.0051 33 1 1.7658 -0.1694 -2.1361 34 1 1.6029 -1.7269 -1.2890 35 1 4.0061 0.1460 -1.0995 36 1 3.9376 -1.3474 -2.0653 37 1 2.5319 -3.1222 -0.5309 38 1 4.6244 -6.5780 1.8008 39 1 1.0485 -10.1660 0.2937 40 1 0.1234 -8.0351 -0.8948 41 1 3.6518 -1.5691 2.1990 42 1 3.9903 0.0037 1.4316 43 1 3.0033 -0.6847 4.7770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071546984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:02 Heat of formation + Delta-G solvation = 50.084419 kcal Electronic energy + Delta-G solvation = -27459.604726 eV Core-core repulsion = 23701.316486 eV Total energy + Delta-G solvation = -3758.288240 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.86174 -40.01273 -38.73844 -37.38598 -34.23569 -32.79946 -32.34704 -31.08807 -30.32488 -29.92456 -28.16455 -26.25208 -25.04950 -23.52287 -22.21933 -21.61584 -20.74569 -20.53757 -20.02295 -18.81741 -18.34341 -17.08577 -16.34317 -16.20470 -15.79850 -15.24611 -15.03343 -14.55028 -14.26908 -14.02398 -13.79929 -13.51839 -13.42775 -13.30383 -13.09880 -12.81622 -12.74668 -12.52174 -11.94737 -11.69697 -11.29819 -11.21881 -10.99365 -10.93890 -10.72862 -10.43400 -10.37210 -10.04663 -9.99578 -9.75839 -9.53543 -9.49687 -8.54804 -8.51974 -8.46675 -7.78107 -6.63680 -5.76571 -3.21560 1.12433 2.33759 2.54632 2.72290 2.98236 3.38790 3.44569 3.47639 3.58311 3.76571 4.49013 4.58338 4.83015 5.10547 5.25164 5.29183 5.30118 5.36420 5.44771 5.49573 5.54493 5.58743 5.86727 5.94272 6.03545 6.08920 6.15216 6.25786 6.28720 6.34780 6.37418 6.44375 6.52235 6.60481 6.65343 6.82513 6.99040 7.04905 7.18389 7.32342 7.36296 7.66952 7.81198 7.94892 8.46881 8.59473 9.21502 9.85738 10.41119 11.31185 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011889 B = 0.004955 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.496132 B = 5649.221138 C = 6463.430033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.119 3.881 7 H 0.080 0.920 8 N -0.695 5.695 9 C 0.586 3.414 10 O -0.525 6.525 11 C 0.027 3.973 12 C -0.091 4.091 13 C -0.038 4.038 14 O -0.170 6.170 15 C 0.002 3.998 16 C -0.199 4.199 17 C 0.003 3.997 18 N -0.529 5.529 19 H 0.419 0.581 20 C 0.160 3.840 21 N -0.583 5.583 22 C -0.254 4.254 23 H 0.067 0.933 24 C 0.009 3.991 25 N -0.897 5.897 26 Si 0.894 3.106 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.390 0.610 38 H 0.159 0.841 39 H 0.209 0.791 40 H 0.151 0.849 41 H 0.099 0.901 42 H 0.027 0.973 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.440 -10.178 -12.650 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.013 3.987 7 H 0.098 0.902 8 N -0.345 5.345 9 C 0.372 3.628 10 O -0.402 6.402 11 C -0.086 4.086 12 C -0.118 4.118 13 C -0.089 4.089 14 O -0.068 6.068 15 C -0.066 4.066 16 C -0.221 4.221 17 C -0.110 4.110 18 N -0.133 5.133 19 H 0.257 0.743 20 C 0.034 3.966 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.085 0.915 24 C -0.191 4.191 25 N -0.541 5.541 26 Si 0.725 3.275 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.224 0.776 38 H 0.177 0.823 39 H 0.226 0.774 40 H 0.169 0.831 41 H 0.117 0.883 42 H 0.045 0.955 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.518 -10.058 -11.891 15.648 hybrid contribution -1.500 -0.227 0.144 1.524 sum -3.018 -10.284 -11.747 15.902 Atomic orbital electron populations 1.21796 0.96148 1.01086 1.00269 1.20458 0.92862 0.93720 0.87170 0.95656 1.22062 0.95187 1.00419 0.99264 1.21704 0.96965 1.00330 0.96728 1.21865 0.97144 0.81193 0.98486 0.90200 1.45721 1.28984 1.08901 1.50898 1.16731 0.84116 0.81927 0.80067 1.90860 1.24525 1.83837 1.40941 1.20541 0.90230 0.95356 1.02522 1.19876 1.01094 0.86167 1.04648 1.19297 1.00926 0.82906 1.05819 1.84001 1.39443 1.22856 1.60463 1.23963 0.87109 0.99812 0.95678 1.20521 1.02858 0.89992 1.08708 1.18987 1.00658 0.85662 1.05705 1.41162 1.22586 1.06727 1.42825 0.74256 1.21221 0.83750 0.97198 0.94462 1.44054 1.02712 1.64874 1.18983 1.19053 0.94629 1.38489 0.86173 0.91511 1.25041 0.97637 0.99412 0.96970 1.69965 1.23084 1.44047 1.17009 0.86421 0.79700 0.80143 0.81279 1.21373 1.21687 1.20611 0.91963 0.94426 0.93134 0.92759 0.93081 0.90839 0.92971 0.77623 0.82317 0.77412 0.83101 0.88282 0.95465 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.94 37.16 0.30 -2.07 16 2 C 0.16 3.11 3.50 -67.62 -0.24 2.87 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -1.94 5.20 -26.63 -0.14 -2.08 16 5 C -0.12 -1.77 5.59 -26.69 -0.15 -1.92 16 6 C 0.12 2.17 2.81 -67.81 -0.19 1.98 16 7 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 8 N -0.70 -11.96 4.91 -55.05 -0.27 -12.23 16 9 C 0.59 11.14 7.75 -12.93 -0.10 11.04 16 10 O -0.53 -11.76 16.53 5.16 0.09 -11.67 16 11 C 0.03 0.45 7.03 -81.86 -0.58 -0.13 16 12 C -0.09 -1.52 10.58 -39.11 -0.41 -1.93 16 13 C -0.04 -0.59 8.20 -38.61 -0.32 -0.91 16 14 O -0.17 -2.37 10.68 3.21 0.03 -2.33 16 15 C 0.00 0.02 12.02 29.40 0.35 0.37 16 16 C -0.20 -2.20 10.89 -39.70 -0.43 -2.63 16 17 C 0.00 0.04 8.11 -83.95 -0.68 -0.64 16 18 N -0.53 -7.44 6.08 -7.04 -0.04 -7.48 16 19 H 0.42 4.75 8.16 -40.82 -0.33 4.42 16 20 C 0.16 3.71 4.89 -3.71 -0.02 3.69 16 21 N -0.58 -13.42 2.91 -164.80 -0.48 -13.90 16 22 C -0.25 -6.57 8.60 -15.06 -0.13 -6.70 16 23 H 0.07 1.70 6.21 -52.49 -0.33 1.37 16 24 C 0.01 0.24 4.96 -17.43 -0.09 0.16 16 25 N -0.90 -26.13 11.14 55.49 0.62 -25.51 16 26 Si 0.89 22.13 29.58 -169.99 -5.03 17.11 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 30 H 0.06 1.21 7.62 -51.93 -0.40 0.81 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.88 7.45 -51.93 -0.39 0.49 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.73 6.40 -51.93 -0.33 0.40 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 5.82 5.86 -40.82 -0.24 5.58 16 38 H 0.16 2.52 8.06 -52.49 -0.42 2.09 16 39 H 0.21 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 41 H 0.10 2.74 6.06 -51.93 -0.31 2.42 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -32.74 347.86 -8.32 -41.07 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.66 Total: 8.61 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -2.82 Total: 1.11 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.17 Total: -59.13 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.12 Total: -14.00 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.74 -8.32 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071546984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.150 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds