Wall clock time and date at job start Tue Mar 31 2020 12:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.58799 * 2 1 4 4 C 1.53164 * 109.59043 * 239.56567 * 2 1 3 5 5 C 1.53041 * 109.33174 * 185.56843 * 4 2 1 6 6 C 1.53041 * 109.52064 * 61.37251 * 5 4 2 7 7 H 1.09006 * 109.49082 * 178.69110 * 6 5 4 8 8 N 1.46496 * 109.49787 * 58.59740 * 6 5 4 9 9 C 1.34775 * 120.00185 * 154.99455 * 8 6 5 10 10 O 1.21734 * 119.99913 * 0.02562 * 9 8 6 11 11 C 1.46496 * 120.00185 * 179.97438 * 9 8 6 12 12 C 1.37782 * 125.85515 * 180.02562 * 11 9 8 13 13 C 1.39941 * 107.68027 * 179.97438 * 12 11 9 14 14 O 1.35120 * 145.13673 * 180.02562 * 13 12 11 15 15 C 1.34374 * 109.62465 * 179.97438 * 14 13 12 16 16 C 1.34464 * 109.44494 * 359.97438 * 15 14 13 17 17 C 1.39134 * 107.40554 * 359.97438 * 13 12 11 18 18 N 1.37108 * 108.11223 * 359.77676 * 17 13 12 19 19 H 0.96991 * 125.74479 * 180.22351 * 18 17 13 20 20 C 1.53191 * 109.31761 * 298.64109 * 6 5 4 21 21 N 1.46924 * 109.58887 * 120.28490 * 2 1 3 22 22 C 1.36943 * 120.63047 * 353.37615 * 21 2 1 23 23 H 1.07994 * 119.99694 * 29.03344 * 22 21 2 24 24 C 1.38804 * 119.99860 * 209.04061 * 22 21 2 25 25 N 1.31617 * 120.00554 * 15.00542 * 24 22 21 26 26 Si 1.86804 * 119.99695 * 195.01258 * 24 22 21 27 27 H 1.48496 * 109.47404 * 89.99845 * 26 24 22 28 28 H 1.48509 * 109.46800 * 209.99626 * 26 24 22 29 29 H 1.48502 * 109.47190 * 329.99526 * 26 24 22 30 30 H 1.09004 * 109.47092 * 299.71657 * 1 2 3 31 31 H 1.09005 * 109.47173 * 59.71579 * 1 2 3 32 32 H 1.09001 * 109.47141 * 179.71731 * 1 2 3 33 33 H 1.09003 * 109.47698 * 65.62364 * 4 2 1 34 34 H 1.08998 * 109.50641 * 305.54009 * 4 2 1 35 35 H 1.09006 * 109.46056 * 301.36483 * 5 4 2 36 36 H 1.08993 * 109.46309 * 181.38908 * 5 4 2 37 37 H 0.96999 * 119.99997 * 334.99818 * 8 6 5 38 38 H 1.08001 * 126.16010 * 359.93946 * 12 11 9 39 39 H 1.07997 * 125.27789 * 180.02562 * 15 14 13 40 40 H 1.08006 * 126.41002 * 180.02562 * 16 15 14 41 41 H 1.08993 * 109.58865 * 174.42189 * 20 6 5 42 42 H 1.08998 * 109.58512 * 294.85100 * 20 6 5 43 43 H 0.96998 * 120.00355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2441 5 6 3.5675 -0.8494 -1.1692 6 6 3.9568 -1.6656 0.0655 7 1 5.0412 -1.7694 0.1057 8 7 3.3405 -2.9924 -0.0112 9 6 3.8970 -4.0327 0.6404 10 8 4.9116 -3.8697 1.2930 11 6 3.2804 -5.3593 0.5642 12 6 3.7443 -6.5015 1.1795 13 6 2.8701 -7.5447 0.8539 14 8 2.6041 -8.8595 1.0156 15 6 1.4895 -9.1812 0.3375 16 6 1.0079 -8.0866 -0.2772 17 6 1.8763 -7.0152 0.0368 18 7 2.1303 -5.6784 -0.1317 19 1 1.5943 -5.0612 -0.6536 20 6 3.4651 -0.9454 1.3249 21 7 2.0226 -0.6981 1.1953 22 6 1.1537 -1.1101 2.1703 23 1 0.1360 -1.3649 1.9142 24 6 1.5812 -1.2000 3.4879 25 7 2.7045 -0.6215 3.8564 26 14 0.5621 -2.1425 4.7380 27 1 0.9960 -3.5624 4.7610 28 1 0.7531 -1.5446 6.0840 29 1 -0.8729 -2.0694 4.3631 30 1 -0.3633 0.5094 0.8925 31 1 -0.3634 0.5183 -0.8875 32 1 -0.3633 -1.0277 -0.0051 33 1 1.7658 -0.1694 -2.1361 34 1 1.6029 -1.7269 -1.2890 35 1 4.0061 0.1460 -1.0995 36 1 3.9376 -1.3474 -2.0653 37 1 2.5319 -3.1222 -0.5309 38 1 4.6244 -6.5780 1.8008 39 1 1.0485 -10.1660 0.2937 40 1 0.1234 -8.0351 -0.8948 41 1 3.6518 -1.5691 2.1990 42 1 3.9903 0.0037 1.4316 43 1 3.0033 -0.6847 4.7770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071546984.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:02 Heat of formation + Delta-G solvation = 27.349187 kcal Electronic energy + Delta-G solvation = -27460.590600 eV Core-core repulsion = 23701.316486 eV Total energy + Delta-G solvation = -3759.274114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.90467 -41.36486 -40.05788 -38.91851 -35.87691 -34.55134 -33.33739 -32.49337 -31.76047 -31.52097 -29.31752 -27.83985 -26.79125 -24.78428 -23.86640 -22.68175 -22.16367 -21.72571 -21.36602 -20.42486 -19.47583 -18.33560 -18.06653 -17.29073 -17.26516 -16.75036 -16.44146 -16.05215 -15.84372 -15.58066 -15.24102 -14.89115 -14.76310 -14.59854 -14.46929 -14.16438 -14.02763 -13.68163 -13.62683 -13.03328 -12.87393 -12.78064 -12.65897 -12.58063 -12.42366 -12.13406 -12.08650 -11.59899 -11.33005 -11.17501 -11.06658 -11.06060 -10.54383 -10.09205 -9.65372 -8.88330 -8.58385 -7.83252 -5.28266 -0.02965 1.22394 1.37343 1.41835 1.46943 1.49503 1.70237 1.82253 2.27284 2.40196 2.48309 3.32975 3.62154 3.62742 3.77351 3.95990 4.01950 4.08682 4.17256 4.31624 4.47801 4.48975 4.63716 4.68894 4.75038 4.76758 4.79961 4.95267 5.01081 5.03201 5.06013 5.11198 5.24943 5.31002 5.44361 5.52678 5.56417 5.59537 5.64300 5.72033 5.75995 6.13606 6.33543 6.43400 6.55599 7.15829 7.18068 7.92540 8.42325 9.21635 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011889 B = 0.004955 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.496132 B = 5649.221138 C = 6463.430033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.015 0.985 4 C -0.119 4.119 5 C -0.111 4.111 6 C 0.127 3.873 7 H 0.071 0.929 8 N -0.683 5.683 9 C 0.584 3.416 10 O -0.572 6.572 11 C 0.000 4.000 12 C -0.102 4.102 13 C -0.076 4.076 14 O -0.186 6.186 15 C 0.027 3.973 16 C -0.211 4.211 17 C 0.012 3.988 18 N -0.516 5.516 19 H 0.432 0.568 20 C 0.169 3.831 21 N -0.594 5.594 22 C -0.235 4.235 23 H 0.077 0.923 24 C -0.052 4.052 25 N -0.935 5.935 26 Si 0.945 3.055 27 H -0.301 1.301 28 H -0.300 1.300 29 H -0.261 1.261 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.403 0.597 38 H 0.151 0.849 39 H 0.262 0.738 40 H 0.186 0.814 41 H 0.049 0.951 42 H 0.000 1.000 43 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.347 -11.926 -16.195 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.032 0.968 4 C -0.158 4.158 5 C -0.149 4.149 6 C 0.022 3.978 7 H 0.089 0.911 8 N -0.333 5.333 9 C 0.371 3.629 10 O -0.452 6.452 11 C -0.113 4.113 12 C -0.130 4.130 13 C -0.127 4.127 14 O -0.085 6.085 15 C -0.040 4.040 16 C -0.232 4.232 17 C -0.102 4.102 18 N -0.121 5.121 19 H 0.273 0.727 20 C 0.042 3.958 21 N -0.318 5.318 22 C -0.365 4.365 23 H 0.094 0.906 24 C -0.247 4.247 25 N -0.582 5.582 26 Si 0.775 3.225 27 H -0.229 1.229 28 H -0.227 1.227 29 H -0.185 1.185 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.240 0.760 38 H 0.169 0.831 39 H 0.278 0.722 40 H 0.204 0.796 41 H 0.067 0.933 42 H 0.018 0.982 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.491 -11.780 -15.509 19.986 hybrid contribution -0.662 0.216 1.188 1.377 sum -5.153 -11.564 -14.320 19.114 Atomic orbital electron populations 1.21732 0.94726 1.01350 1.00817 1.20779 0.94142 0.93303 0.86981 0.96761 1.21960 0.94671 1.00997 0.98181 1.21683 0.97341 1.00042 0.95785 1.21595 0.96628 0.81674 0.97952 0.91101 1.45560 1.29259 1.08024 1.50457 1.17056 0.83619 0.82989 0.79247 1.90825 1.26682 1.84734 1.42948 1.20064 0.92021 0.94245 1.04924 1.19978 1.01303 0.87254 1.04503 1.19313 1.01815 0.83955 1.07623 1.84013 1.41161 1.21876 1.61430 1.25143 0.84741 1.01655 0.92478 1.21015 1.03788 0.88618 1.09824 1.19577 1.00571 0.85741 1.04340 1.41013 1.21692 1.07138 1.42261 0.72713 1.20889 0.84222 0.95487 0.95208 1.44266 1.02183 1.65561 1.19813 1.19392 0.95039 1.35694 0.86403 0.90556 1.25682 0.98807 1.01329 0.98932 1.70133 1.25031 1.46627 1.16381 0.85591 0.79585 0.78035 0.79294 1.22878 1.22685 1.18514 0.94766 0.90559 0.92946 0.88953 0.91903 0.90555 0.89431 0.75993 0.83127 0.72192 0.79632 0.93292 0.98210 0.94836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 7.94 71.98 0.57 -3.55 16 2 C 0.15 5.48 3.50 44.96 0.16 5.64 16 3 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 4 C -0.12 -3.08 5.20 30.66 0.16 -2.92 16 5 C -0.11 -2.98 5.59 30.62 0.17 -2.81 16 6 C 0.13 4.67 2.81 45.07 0.13 4.80 16 7 H 0.07 2.74 7.58 -2.38 -0.02 2.72 16 8 N -0.68 -23.32 4.91 -446.28 -2.19 -25.51 16 9 C 0.58 23.01 7.75 86.40 0.67 23.68 16 10 O -0.57 -27.37 16.53 -4.46 -0.07 -27.44 16 11 C 0.00 0.01 7.03 40.19 0.28 0.30 16 12 C -0.10 -3.58 10.58 22.57 0.24 -3.34 16 13 C -0.08 -2.36 8.20 22.90 0.19 -2.18 16 14 O -0.19 -4.85 10.68 -11.41 -0.12 -4.97 16 15 C 0.03 0.42 12.02 66.96 0.80 1.23 16 16 C -0.21 -3.79 10.89 22.19 0.24 -3.54 16 17 C 0.01 0.32 8.11 39.32 0.32 0.64 16 18 N -0.52 -13.82 6.08 -176.19 -1.07 -14.89 16 19 H 0.43 8.78 8.16 -92.72 -0.76 8.02 16 20 C 0.17 8.17 4.89 86.36 0.42 8.60 16 21 N -0.59 -27.55 2.91 -675.31 -1.96 -29.51 16 22 C -0.23 -12.25 8.60 84.03 0.72 -11.53 16 23 H 0.08 3.80 6.21 -2.91 -0.02 3.78 16 24 C -0.05 -2.98 4.96 84.86 0.42 -2.56 16 25 N -0.93 -57.61 11.14 21.65 0.24 -57.37 16 26 Si 0.94 46.88 29.58 68.60 2.03 48.91 16 27 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 28 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 29 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 30 H 0.03 1.26 7.62 -2.39 -0.02 1.25 16 31 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.05 1.65 7.45 -2.39 -0.02 1.63 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.51 6.40 -2.39 -0.02 1.49 16 35 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.40 11.26 5.86 -92.71 -0.54 10.72 16 38 H 0.15 5.24 8.06 -2.91 -0.02 5.22 16 39 H 0.26 1.03 8.06 -2.91 -0.02 1.00 16 40 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 41 H 0.05 2.88 6.06 -2.39 -0.01 2.87 16 42 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 43 H 0.24 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -78.09 347.86 2.11 -75.98 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -0.24 Total: 22.35 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 5.50 Total: 12.45 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -4.99 Total: -127.29 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.20 Total: -32.41 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -78.09 2.11 -75.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071546984.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.331 kcal (2) G-P(sol) polarization free energy of solvation -78.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds