Wall clock time and date at job start Tue Mar 31 2020 12:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.58301 * 2 1 4 4 C 1.53193 * 109.58587 * 120.43023 * 2 1 3 5 5 C 1.53044 * 109.31142 * 174.42054 * 4 2 1 6 6 C 1.53043 * 109.53900 * 298.63512 * 5 4 2 7 7 H 1.08995 * 109.49583 * 301.41030 * 6 5 4 8 8 N 1.46500 * 109.49629 * 181.34835 * 6 5 4 9 9 C 1.34776 * 120.00015 * 155.00224 * 8 6 5 10 10 O 1.21725 * 119.99810 * 359.97438 * 9 8 6 11 11 C 1.46492 * 119.99858 * 180.02562 * 9 8 6 12 12 C 1.37779 * 125.85520 * 180.02562 * 11 9 8 13 13 C 1.39939 * 107.68499 * 179.97438 * 12 11 9 14 14 O 1.35119 * 145.13594 * 179.97438 * 13 12 11 15 15 C 1.34385 * 109.61861 * 179.97438 * 14 13 12 16 16 C 1.34456 * 109.44943 * 0.02562 * 15 14 13 17 17 C 1.39141 * 107.40446 * 359.97438 * 13 12 11 18 18 N 1.37111 * 108.10685 * 359.77156 * 17 13 12 19 19 H 0.96998 * 125.73874 * 180.25647 * 18 17 13 20 20 C 1.52762 * 109.38024 * 61.24120 * 6 5 4 21 21 N 1.46923 * 109.00850 * 305.58475 * 20 6 5 22 22 C 1.36936 * 120.63133 * 233.58986 * 21 20 6 23 23 H 1.08002 * 120.00023 * 150.98059 * 22 21 20 24 24 C 1.38812 * 119.99954 * 330.97980 * 22 21 20 25 25 N 1.31617 * 120.00004 * 343.83473 * 24 22 21 26 26 Si 1.86803 * 120.00251 * 163.83832 * 24 22 21 27 27 H 1.48501 * 109.47213 * 84.97931 * 26 24 22 28 28 H 1.48499 * 109.47048 * 324.98080 * 26 24 22 29 29 H 1.48501 * 109.47429 * 204.97882 * 26 24 22 30 30 H 1.09002 * 109.46963 * 180.28259 * 1 2 3 31 31 H 1.08998 * 109.47113 * 300.28088 * 1 2 3 32 32 H 1.09000 * 109.46839 * 60.28497 * 1 2 3 33 33 H 1.09000 * 109.49669 * 294.37320 * 4 2 1 34 34 H 1.08999 * 109.49890 * 54.43813 * 4 2 1 35 35 H 1.09003 * 109.45591 * 58.65791 * 5 4 2 36 36 H 1.09002 * 109.45854 * 178.62237 * 5 4 2 37 37 H 0.97003 * 119.99556 * 334.99727 * 8 6 5 38 38 H 1.07997 * 126.16098 * 359.97438 * 12 11 9 39 39 H 1.08003 * 125.27491 * 180.02562 * 15 14 13 40 40 H 1.08000 * 126.41604 * 179.97438 * 16 15 14 41 41 H 1.09006 * 109.50749 * 185.70770 * 20 6 5 42 42 H 1.08994 * 109.43486 * 65.42636 * 20 6 5 43 43 H 0.96999 * 119.99900 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6657 -0.0657 7 1 3.4984 -2.6528 -0.0087 8 7 5.4142 -1.8059 -0.1195 9 6 5.9674 -2.8480 -0.7710 10 8 5.2561 -3.6729 -1.3143 11 6 7.4246 -2.9884 -0.8243 12 6 8.1153 -4.0007 -1.4539 13 6 9.4817 -3.7625 -1.2682 14 8 10.7302 -4.2116 -1.5240 15 6 11.6305 -3.3805 -0.9720 16 6 10.9895 -2.3771 -0.3473 17 6 9.6028 -2.5954 -0.5204 18 7 8.3421 -2.1250 -0.2575 19 1 8.1300 -1.3222 0.2440 20 6 3.4645 -0.9502 -1.3223 21 7 2.0226 -0.6980 -1.1954 22 6 1.1537 -1.1107 -2.1700 23 1 0.1348 -1.3616 -1.9141 24 6 1.5824 -1.2067 -3.4867 25 7 2.6962 -0.6138 -3.8611 26 14 0.5784 -2.1773 -4.7275 27 1 -0.4892 -1.3100 -5.2874 28 1 -0.0377 -3.3502 -4.0568 29 1 1.4638 -2.6431 -5.8249 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.7660 -0.1696 2.1366 34 1 1.6025 -1.7268 1.2894 35 1 4.0061 0.1459 1.0995 36 1 3.9378 -1.3477 2.0650 37 1 5.9810 -1.1486 0.3138 38 1 7.6805 -4.8290 -1.9937 39 1 12.7027 -3.5000 -1.0225 40 1 11.4477 -1.5578 0.1868 41 1 3.6504 -1.5769 -2.1946 42 1 3.9929 -0.0031 -1.4310 43 1 2.9959 -0.6811 -4.7811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071546985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:07 Heat of formation + Delta-G solvation = 48.824855 kcal Electronic energy + Delta-G solvation = -26571.065255 eV Core-core repulsion = 22812.722396 eV Total energy + Delta-G solvation = -3758.342859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.99826 -40.10977 -38.73248 -37.47746 -34.54469 -32.84402 -32.47492 -31.11525 -30.45487 -29.87913 -28.33234 -26.08328 -25.05698 -23.41831 -22.27765 -21.72745 -20.84595 -20.56632 -19.94707 -19.27084 -18.36381 -17.09105 -16.51044 -16.32623 -15.92400 -15.34693 -15.13668 -14.59825 -14.36127 -13.87097 -13.81676 -13.66271 -13.50800 -13.39046 -13.20991 -12.93479 -12.73048 -12.42401 -11.90650 -11.82425 -11.48706 -11.14773 -10.90897 -10.67888 -10.58803 -10.41948 -10.28355 -10.17889 -10.01636 -9.91224 -9.55104 -9.49238 -8.69569 -8.67691 -8.41537 -7.92975 -6.62372 -5.73801 -3.17612 0.97543 2.20202 2.40675 2.58233 2.82752 3.39468 3.45249 3.51607 3.53491 3.55105 4.44804 4.54646 4.68834 4.94298 5.16307 5.27531 5.33830 5.36381 5.39927 5.48597 5.54692 5.62674 5.73838 5.92779 6.03080 6.04849 6.22073 6.23266 6.26081 6.36149 6.41789 6.44519 6.50873 6.60106 6.68405 6.82237 7.02361 7.05138 7.10705 7.19705 7.29454 7.70743 7.75783 7.87620 8.42043 8.50672 9.24552 9.89158 10.43796 11.34659 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.003462 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.707938 B = 8085.056513 C = 9307.802138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.086 0.914 8 N -0.716 5.716 9 C 0.583 3.417 10 O -0.510 6.510 11 C 0.020 3.980 12 C -0.086 4.086 13 C -0.038 4.038 14 O -0.169 6.169 15 C 0.006 3.994 16 C -0.201 4.201 17 C 0.004 3.996 18 N -0.532 5.532 19 H 0.419 0.581 20 C 0.167 3.833 21 N -0.582 5.582 22 C -0.255 4.255 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.279 1.279 29 H -0.289 1.289 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.387 0.613 38 H 0.161 0.839 39 H 0.210 0.790 40 H 0.152 0.848 41 H 0.095 0.905 42 H 0.016 0.984 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.750 -0.637 11.441 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.104 0.896 8 N -0.366 5.366 9 C 0.368 3.632 10 O -0.384 6.384 11 C -0.092 4.092 12 C -0.113 4.113 13 C -0.090 4.090 14 O -0.066 6.066 15 C -0.062 4.062 16 C -0.223 4.223 17 C -0.109 4.109 18 N -0.136 5.136 19 H 0.257 0.743 20 C 0.040 3.960 21 N -0.306 5.306 22 C -0.385 4.385 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.204 1.204 29 H -0.215 1.215 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.219 0.781 38 H 0.178 0.822 39 H 0.227 0.773 40 H 0.170 0.830 41 H 0.114 0.886 42 H 0.034 0.966 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.226 -1.378 10.760 17.890 hybrid contribution 0.051 0.556 -0.127 0.573 sum 14.277 -0.822 10.633 17.821 Atomic orbital electron populations 1.21807 0.95947 1.01432 1.00244 1.20491 0.93144 0.93540 0.87011 0.95761 1.22049 0.94109 1.01443 0.98980 1.21689 0.97624 0.99551 0.96600 1.21999 0.76925 1.01317 0.98535 0.89586 1.45970 1.09061 1.26213 1.55375 1.16794 0.84455 0.82328 0.79576 1.90929 1.60872 1.42072 1.44537 1.20540 0.89671 0.93872 1.05154 1.19927 0.85806 1.00987 1.04580 1.19304 0.86211 0.96988 1.06474 1.84020 1.12819 1.46309 1.63499 1.24004 0.94962 0.89914 0.97341 1.20527 0.88721 1.03625 1.09407 1.19000 0.87484 0.98241 1.06138 1.41155 1.02983 1.23257 1.46244 0.74288 1.20992 0.83728 0.96929 0.94329 1.43999 1.02599 1.64764 1.19213 1.19110 0.94609 1.38590 0.86147 0.91189 1.25059 0.97762 0.99353 0.96999 1.69996 1.23854 1.43633 1.16877 0.86357 0.79283 0.80231 0.81149 1.21424 1.20439 1.21535 0.92753 0.94348 0.91946 0.92617 0.91943 0.92309 0.93029 0.78095 0.82157 0.77320 0.83035 0.88648 0.96570 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.94 37.16 0.30 -2.23 16 2 C 0.16 3.30 3.50 -67.60 -0.24 3.07 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.08 5.37 -26.61 -0.14 -2.22 16 5 C -0.12 -1.80 5.36 -26.69 -0.14 -1.94 16 6 C 0.12 2.20 2.59 -68.03 -0.18 2.02 16 7 H 0.09 1.84 7.57 -51.93 -0.39 1.45 16 8 N -0.72 -11.24 5.08 -55.27 -0.28 -11.52 16 9 C 0.58 10.30 7.75 -12.94 -0.10 10.20 16 10 O -0.51 -11.28 16.53 5.17 0.09 -11.20 16 11 C 0.02 0.30 7.03 -81.86 -0.58 -0.27 16 12 C -0.09 -1.30 10.58 -39.11 -0.41 -1.71 16 13 C -0.04 -0.54 8.20 -38.61 -0.32 -0.85 16 14 O -0.17 -2.11 10.68 3.19 0.03 -2.07 16 15 C 0.01 0.05 12.02 29.40 0.35 0.40 16 16 C -0.20 -1.88 10.89 -39.70 -0.43 -2.31 16 17 C 0.00 0.05 8.11 -83.95 -0.68 -0.63 16 18 N -0.53 -6.25 6.08 -7.04 -0.04 -6.29 16 19 H 0.42 3.55 8.16 -40.82 -0.33 3.22 16 20 C 0.17 3.98 4.84 -3.93 -0.02 3.96 16 21 N -0.58 -14.30 3.00 -165.04 -0.49 -14.79 16 22 C -0.26 -6.94 8.60 -15.06 -0.13 -7.07 16 23 H 0.07 1.85 6.21 -52.49 -0.33 1.52 16 24 C 0.01 0.21 4.93 -17.43 -0.09 0.12 16 25 N -0.90 -26.62 11.21 55.49 0.62 -25.99 16 26 Si 0.90 22.39 29.58 -169.99 -5.03 17.36 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H 0.05 1.02 7.45 -51.93 -0.39 0.63 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.25 7.62 -51.93 -0.40 0.85 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.39 4.57 7.69 -40.82 -0.31 4.26 16 38 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.21 0.78 8.06 -52.48 -0.42 0.35 16 40 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.10 2.70 6.10 -51.93 -0.32 2.38 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -34.17 351.43 -8.44 -42.61 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.83 Total: 6.05 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -2.80 Total: 0.55 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.20 Total: -58.60 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.12 Total: -13.27 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.17 -8.44 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071546985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.439 kcal (2) G-P(sol) polarization free energy of solvation -34.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds