Wall clock time and date at job start Tue Mar 31 2020 12:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.58301 * 2 1 4 4 C 1.53193 * 109.58587 * 120.43023 * 2 1 3 5 5 C 1.53044 * 109.31142 * 174.42054 * 4 2 1 6 6 C 1.53043 * 109.53900 * 298.63512 * 5 4 2 7 7 H 1.08995 * 109.49583 * 301.41030 * 6 5 4 8 8 N 1.46500 * 109.49629 * 181.34835 * 6 5 4 9 9 C 1.34776 * 120.00015 * 155.00224 * 8 6 5 10 10 O 1.21725 * 119.99810 * 359.97438 * 9 8 6 11 11 C 1.46492 * 119.99858 * 180.02562 * 9 8 6 12 12 C 1.37779 * 125.85520 * 180.02562 * 11 9 8 13 13 C 1.39939 * 107.68499 * 179.97438 * 12 11 9 14 14 O 1.35119 * 145.13594 * 179.97438 * 13 12 11 15 15 C 1.34385 * 109.61861 * 179.97438 * 14 13 12 16 16 C 1.34456 * 109.44943 * 0.02562 * 15 14 13 17 17 C 1.39141 * 107.40446 * 359.97438 * 13 12 11 18 18 N 1.37111 * 108.10685 * 359.77156 * 17 13 12 19 19 H 0.96998 * 125.73874 * 180.25647 * 18 17 13 20 20 C 1.52762 * 109.38024 * 61.24120 * 6 5 4 21 21 N 1.46923 * 109.00850 * 305.58475 * 20 6 5 22 22 C 1.36936 * 120.63133 * 233.58986 * 21 20 6 23 23 H 1.08002 * 120.00023 * 150.98059 * 22 21 20 24 24 C 1.38812 * 119.99954 * 330.97980 * 22 21 20 25 25 N 1.31617 * 120.00004 * 343.83473 * 24 22 21 26 26 Si 1.86803 * 120.00251 * 163.83832 * 24 22 21 27 27 H 1.48501 * 109.47213 * 84.97931 * 26 24 22 28 28 H 1.48499 * 109.47048 * 324.98080 * 26 24 22 29 29 H 1.48501 * 109.47429 * 204.97882 * 26 24 22 30 30 H 1.09002 * 109.46963 * 180.28259 * 1 2 3 31 31 H 1.08998 * 109.47113 * 300.28088 * 1 2 3 32 32 H 1.09000 * 109.46839 * 60.28497 * 1 2 3 33 33 H 1.09000 * 109.49669 * 294.37320 * 4 2 1 34 34 H 1.08999 * 109.49890 * 54.43813 * 4 2 1 35 35 H 1.09003 * 109.45591 * 58.65791 * 5 4 2 36 36 H 1.09002 * 109.45854 * 178.62237 * 5 4 2 37 37 H 0.97003 * 119.99556 * 334.99727 * 8 6 5 38 38 H 1.07997 * 126.16098 * 359.97438 * 12 11 9 39 39 H 1.08003 * 125.27491 * 180.02562 * 15 14 13 40 40 H 1.08000 * 126.41604 * 179.97438 * 16 15 14 41 41 H 1.09006 * 109.50749 * 185.70770 * 20 6 5 42 42 H 1.08994 * 109.43486 * 65.42636 * 20 6 5 43 43 H 0.96999 * 119.99900 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5675 -0.8495 1.1690 6 6 3.9569 -1.6657 -0.0657 7 1 3.4984 -2.6528 -0.0087 8 7 5.4142 -1.8059 -0.1195 9 6 5.9674 -2.8480 -0.7710 10 8 5.2561 -3.6729 -1.3143 11 6 7.4246 -2.9884 -0.8243 12 6 8.1153 -4.0007 -1.4539 13 6 9.4817 -3.7625 -1.2682 14 8 10.7302 -4.2116 -1.5240 15 6 11.6305 -3.3805 -0.9720 16 6 10.9895 -2.3771 -0.3473 17 6 9.6028 -2.5954 -0.5204 18 7 8.3421 -2.1250 -0.2575 19 1 8.1300 -1.3222 0.2440 20 6 3.4645 -0.9502 -1.3223 21 7 2.0226 -0.6980 -1.1954 22 6 1.1537 -1.1107 -2.1700 23 1 0.1348 -1.3616 -1.9141 24 6 1.5824 -1.2067 -3.4867 25 7 2.6962 -0.6138 -3.8611 26 14 0.5784 -2.1773 -4.7275 27 1 -0.4892 -1.3100 -5.2874 28 1 -0.0377 -3.3502 -4.0568 29 1 1.4638 -2.6431 -5.8249 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3633 0.5182 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.7660 -0.1696 2.1366 34 1 1.6025 -1.7268 1.2894 35 1 4.0061 0.1459 1.0995 36 1 3.9378 -1.3477 2.0650 37 1 5.9810 -1.1486 0.3138 38 1 7.6805 -4.8290 -1.9937 39 1 12.7027 -3.5000 -1.0225 40 1 11.4477 -1.5578 0.1868 41 1 3.6504 -1.5769 -2.1946 42 1 3.9929 -0.0031 -1.4310 43 1 2.9959 -0.6811 -4.7811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071546985.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:06 Heat of formation + Delta-G solvation = 24.246280 kcal Electronic energy + Delta-G solvation = -26572.131062 eV Core-core repulsion = 22812.722396 eV Total energy + Delta-G solvation = -3759.408666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.92156 -41.36796 -40.01515 -39.02281 -36.13700 -34.68233 -33.34950 -32.50836 -31.78334 -31.55201 -29.40979 -27.73010 -26.79302 -24.68821 -23.89690 -22.68603 -22.16952 -21.72613 -21.37856 -20.77567 -19.40473 -18.36454 -18.11112 -17.47801 -17.27650 -16.84796 -16.47930 -16.07967 -15.81189 -15.54134 -15.24102 -15.03972 -14.83677 -14.61727 -14.47332 -14.23952 -14.10557 -13.66515 -13.50561 -13.09152 -12.79490 -12.78563 -12.69926 -12.55444 -12.29925 -12.14760 -12.01985 -11.70367 -11.50547 -11.20390 -11.12330 -11.07655 -10.53241 -10.23591 -9.66890 -8.90812 -8.62966 -7.86102 -5.30881 -0.07214 1.19915 1.40622 1.45822 1.47832 1.52404 1.69060 1.74654 2.20823 2.28373 2.51139 3.31031 3.58369 3.64897 3.77209 3.93242 3.96514 4.08121 4.23079 4.30911 4.37671 4.47521 4.59995 4.69261 4.71054 4.75776 4.78687 4.87898 5.00518 5.00752 5.06056 5.16851 5.25731 5.30729 5.35730 5.44577 5.54375 5.55341 5.61202 5.70639 5.77842 6.12952 6.31006 6.40731 6.50293 7.07891 7.16897 7.90095 8.38612 9.19311 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.003462 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.707938 B = 8085.056513 C = 9307.802138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.056 0.944 8 N -0.700 5.700 9 C 0.584 3.416 10 O -0.567 6.567 11 C -0.001 4.001 12 C -0.098 4.098 13 C -0.077 4.077 14 O -0.187 6.187 15 C 0.028 3.972 16 C -0.211 4.211 17 C 0.017 3.983 18 N -0.515 5.515 19 H 0.435 0.565 20 C 0.178 3.822 21 N -0.602 5.602 22 C -0.251 4.251 23 H 0.075 0.925 24 C -0.052 4.052 25 N -0.933 5.933 26 Si 0.955 3.045 27 H -0.277 1.277 28 H -0.274 1.274 29 H -0.300 1.300 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.409 0.591 38 H 0.150 0.850 39 H 0.262 0.738 40 H 0.188 0.812 41 H 0.042 0.958 42 H -0.001 1.001 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.647 0.531 14.518 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.026 3.974 7 H 0.075 0.925 8 N -0.351 5.351 9 C 0.371 3.629 10 O -0.445 6.445 11 C -0.114 4.114 12 C -0.126 4.126 13 C -0.128 4.128 14 O -0.086 6.086 15 C -0.039 4.039 16 C -0.232 4.232 17 C -0.098 4.098 18 N -0.121 5.121 19 H 0.276 0.724 20 C 0.051 3.949 21 N -0.327 5.327 22 C -0.381 4.381 23 H 0.093 0.907 24 C -0.248 4.248 25 N -0.580 5.580 26 Si 0.783 3.217 27 H -0.203 1.203 28 H -0.199 1.199 29 H -0.227 1.227 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.246 0.754 38 H 0.167 0.833 39 H 0.277 0.723 40 H 0.205 0.795 41 H 0.061 0.939 42 H 0.017 0.983 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 16.114 -0.153 13.911 21.289 hybrid contribution -0.380 0.210 -1.044 1.130 sum 15.735 0.058 12.867 20.326 Atomic orbital electron populations 1.21744 0.94805 1.01166 1.01064 1.20822 0.94302 0.93439 0.86675 0.95924 1.21955 0.94475 1.00969 0.98339 1.21664 0.97219 1.00003 0.95636 1.21536 0.78237 0.99659 0.98016 0.92532 1.45695 1.08222 1.26303 1.54904 1.17135 0.85461 0.81788 0.78466 1.90892 1.62502 1.44196 1.46956 1.19898 0.88444 0.95419 1.07606 1.19995 0.87213 1.00927 1.04497 1.19312 0.86442 0.98570 1.08496 1.84029 1.12610 1.47587 1.64325 1.25160 0.96399 0.88069 0.94265 1.21018 0.86781 1.05148 1.10289 1.19553 0.88609 0.97163 1.04438 1.40984 1.02357 1.23130 1.45583 0.72373 1.20677 0.83914 0.95356 0.94939 1.44297 1.02508 1.65686 1.20168 1.19458 0.95107 1.36824 0.86746 0.90716 1.25762 0.99047 1.01035 0.98916 1.70154 1.25649 1.45728 1.16439 0.85478 0.78017 0.79236 0.78937 1.20301 1.19895 1.22714 0.93541 0.90233 0.94370 0.88439 0.92839 0.90601 0.89405 0.75447 0.83260 0.72281 0.79516 0.93946 0.98327 0.94702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 7.94 71.98 0.57 -4.05 16 2 C 0.15 5.94 3.50 44.98 0.16 6.10 16 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -3.52 5.37 30.67 0.16 -3.36 16 5 C -0.11 -2.99 5.36 30.62 0.16 -2.83 16 6 C 0.13 4.99 2.59 44.93 0.12 5.10 16 7 H 0.06 2.51 7.57 -2.39 -0.02 2.49 16 8 N -0.70 -22.13 5.08 -446.98 -2.27 -24.40 16 9 C 0.58 21.70 7.75 86.39 0.67 22.37 16 10 O -0.57 -27.14 16.53 -4.43 -0.07 -27.21 16 11 C 0.00 -0.03 7.03 40.19 0.28 0.25 16 12 C -0.10 -3.15 10.58 22.57 0.24 -2.91 16 13 C -0.08 -2.17 8.20 22.90 0.19 -1.98 16 14 O -0.19 -4.40 10.68 -11.50 -0.12 -4.52 16 15 C 0.03 0.37 12.02 66.95 0.80 1.18 16 16 C -0.21 -3.12 10.89 22.19 0.24 -2.88 16 17 C 0.02 0.39 8.11 39.32 0.32 0.71 16 18 N -0.52 -11.52 6.08 -176.19 -1.07 -12.59 16 19 H 0.44 6.45 8.16 -92.71 -0.76 5.70 16 20 C 0.18 8.85 4.84 86.22 0.42 9.26 16 21 N -0.60 -30.28 3.00 -676.05 -2.03 -32.30 16 22 C -0.25 -14.07 8.60 84.03 0.72 -13.35 16 23 H 0.08 4.03 6.21 -2.91 -0.02 4.01 16 24 C -0.05 -3.09 4.93 84.86 0.42 -2.67 16 25 N -0.93 -58.32 11.21 21.65 0.24 -58.08 16 26 Si 0.95 47.94 29.58 68.60 2.03 49.97 16 27 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 28 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 29 H -0.30 -15.48 7.11 99.48 0.71 -14.77 16 30 H 0.05 1.69 7.45 -2.39 -0.02 1.68 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.04 1.50 7.62 -2.39 -0.02 1.49 16 33 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.41 9.08 7.69 -92.71 -0.71 8.37 16 38 H 0.15 4.87 8.06 -2.91 -0.02 4.85 16 39 H 0.26 0.44 8.06 -2.91 -0.02 0.42 16 40 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.04 2.56 6.10 -2.38 -0.01 2.54 16 42 H 0.00 -0.07 8.14 -2.39 -0.02 -0.08 16 43 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -82.15 351.43 1.77 -80.38 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -0.41 Total: 17.80 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 5.48 Total: 10.95 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -5.12 Total: -127.36 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.20 Total: -31.73 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -82.15 1.77 -80.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071546985.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.622 kcal (2) G-P(sol) polarization free energy of solvation -82.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds