Wall clock time and date at job start Tue Mar 31 2020 12:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.58487 * 2 1 4 4 C 1.53191 * 109.58708 * 120.28495 * 2 1 3 5 5 C 1.53046 * 109.31305 * 174.56756 * 4 2 1 6 6 C 1.53042 * 109.53294 * 298.63444 * 5 4 2 7 7 H 1.09002 * 109.49106 * 181.31744 * 6 5 4 8 8 N 1.46502 * 109.50002 * 301.41102 * 6 5 4 9 9 C 1.34770 * 120.00416 * 205.00346 * 8 6 5 10 10 O 1.21736 * 119.99628 * 359.97438 * 9 8 6 11 11 C 1.46493 * 120.00332 * 180.02562 * 9 8 6 12 12 C 1.37780 * 125.85801 * 180.02562 * 11 9 8 13 13 C 1.39933 * 107.68543 * 179.97438 * 12 11 9 14 14 O 1.35121 * 145.13747 * 180.02562 * 13 12 11 15 15 C 1.34380 * 109.61993 * 179.97438 * 14 13 12 16 16 C 1.34462 * 109.44992 * 359.97438 * 15 14 13 17 17 C 1.39138 * 107.40568 * 359.97438 * 13 12 11 18 18 N 1.37106 * 108.10721 * 359.77279 * 17 13 12 19 19 H 0.97003 * 125.74649 * 180.26330 * 18 17 13 20 20 C 1.53184 * 109.31326 * 61.36731 * 6 5 4 21 21 N 1.46924 * 109.58805 * 239.71911 * 2 1 3 22 22 C 1.36937 * 120.63296 * 6.46665 * 21 2 1 23 23 H 1.07999 * 119.99696 * 330.41388 * 22 21 2 24 24 C 1.38810 * 120.00670 * 150.40904 * 22 21 2 25 25 N 1.31624 * 119.99291 * 344.61395 * 24 22 21 26 26 Si 1.86796 * 120.00435 * 164.61027 * 24 22 21 27 27 H 1.48498 * 109.46975 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47091 * 119.99903 * 26 24 22 29 29 H 1.48491 * 109.47212 * 240.00025 * 26 24 22 30 30 H 1.09000 * 109.47414 * 299.99641 * 1 2 3 31 31 H 1.09005 * 109.46954 * 59.99805 * 1 2 3 32 32 H 1.09002 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.49579 * 294.51851 * 4 2 1 34 34 H 1.08998 * 109.49786 * 54.61606 * 4 2 1 35 35 H 1.08997 * 109.46144 * 58.65742 * 5 4 2 36 36 H 1.09005 * 109.45761 * 178.61770 * 5 4 2 37 37 H 0.97003 * 119.99582 * 25.00522 * 8 6 5 38 38 H 1.08003 * 126.15715 * 359.94178 * 12 11 9 39 39 H 1.08006 * 125.27229 * 179.97438 * 15 14 13 40 40 H 1.07997 * 126.41536 * 180.02562 * 16 15 14 41 41 H 1.08998 * 109.58804 * 65.14991 * 20 6 5 42 42 H 1.09005 * 109.58608 * 185.43108 * 20 6 5 43 43 H 0.97004 * 119.99680 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1729 6 6 3.9603 -1.6608 -0.0600 7 1 5.0449 -1.7624 -0.0988 8 7 3.3466 -2.9887 0.0181 9 6 3.9060 -4.0289 -0.6311 10 8 4.9210 -3.8648 -1.2829 11 6 3.2919 -5.3567 -0.5535 12 6 3.7594 -6.4991 -1.1657 13 6 2.8875 -7.5436 -0.8388 14 8 2.6254 -8.8597 -0.9973 15 6 1.5110 -9.1826 -0.3194 16 6 1.0263 -8.0880 0.2928 17 6 1.8920 -7.0151 -0.0231 18 7 2.1486 -5.6796 0.1514 19 1 1.6158 -5.0644 0.6793 20 6 3.4685 -0.9435 -1.3210 21 7 2.0225 -0.6980 -1.1954 22 6 1.1534 -1.1128 -2.1689 23 1 0.1391 -1.3782 -1.9098 24 6 1.5760 -1.1920 -3.4888 25 7 2.6886 -0.5950 -3.8604 26 14 0.5657 -2.1459 -4.7373 27 1 -0.6316 -2.7187 -4.0714 28 1 0.1363 -1.2335 -5.8274 29 1 1.3890 -3.2432 -5.3057 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7638 -0.1655 2.1371 34 1 1.6050 -1.7246 1.2921 35 1 4.0045 0.1528 1.1023 36 1 3.9381 -1.3391 2.0703 37 1 2.5376 -3.1193 0.5371 38 1 4.6399 -6.5746 -1.7866 39 1 1.0727 -10.1687 -0.2734 40 1 0.1417 -8.0375 0.9102 41 1 3.9920 0.0065 -1.4287 42 1 3.6599 -1.5672 -2.1943 43 1 2.9837 -0.6500 -4.7828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071546986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:11 Heat of formation + Delta-G solvation = 49.654029 kcal Electronic energy + Delta-G solvation = -27447.638326 eV Core-core repulsion = 23689.331423 eV Total energy + Delta-G solvation = -3758.306903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.86645 -40.01769 -38.73758 -37.38254 -34.23773 -32.78534 -32.35205 -31.08999 -30.32937 -29.92746 -28.16869 -26.25620 -25.04700 -23.52821 -22.22805 -21.62038 -20.74743 -20.53694 -20.02815 -18.82288 -18.34820 -17.09032 -16.34388 -16.20889 -15.79732 -15.24569 -15.03807 -14.55845 -14.27149 -14.02867 -13.79848 -13.52220 -13.42771 -13.30585 -13.10579 -12.82099 -12.75213 -12.52501 -11.94835 -11.70159 -11.30142 -11.21494 -11.00829 -10.93846 -10.73393 -10.43213 -10.36319 -10.05145 -9.99851 -9.76446 -9.54028 -9.49494 -8.55381 -8.52713 -8.47562 -7.78633 -6.62839 -5.77286 -3.21947 1.11862 2.33231 2.54262 2.71748 2.97723 3.38154 3.45060 3.47921 3.57532 3.75756 4.48834 4.57868 4.82518 5.09928 5.24737 5.28731 5.29805 5.36064 5.44385 5.49218 5.54142 5.58178 5.86204 5.93818 6.03316 6.08880 6.14753 6.25743 6.28899 6.34320 6.37101 6.43916 6.51984 6.59871 6.64784 6.81835 6.99213 7.05033 7.17898 7.31105 7.35625 7.64933 7.81449 7.93947 8.46316 8.58642 9.20707 9.85162 10.41596 11.30941 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.004947 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.866907 B = 5659.139767 C = 6477.039120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.119 3.881 7 H 0.080 0.920 8 N -0.695 5.695 9 C 0.586 3.414 10 O -0.525 6.525 11 C 0.026 3.974 12 C -0.090 4.090 13 C -0.038 4.038 14 O -0.170 6.170 15 C 0.002 3.998 16 C -0.199 4.199 17 C 0.003 3.997 18 N -0.529 5.529 19 H 0.419 0.581 20 C 0.161 3.839 21 N -0.583 5.583 22 C -0.253 4.253 23 H 0.067 0.933 24 C 0.009 3.991 25 N -0.896 5.896 26 Si 0.894 3.106 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.288 1.288 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.390 0.610 38 H 0.159 0.841 39 H 0.209 0.791 40 H 0.151 0.849 41 H 0.028 0.972 42 H 0.097 0.903 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 -10.253 12.725 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.014 3.986 7 H 0.098 0.902 8 N -0.345 5.345 9 C 0.372 3.628 10 O -0.402 6.402 11 C -0.087 4.087 12 C -0.118 4.118 13 C -0.090 4.090 14 O -0.068 6.068 15 C -0.065 4.065 16 C -0.221 4.221 17 C -0.110 4.110 18 N -0.133 5.133 19 H 0.257 0.743 20 C 0.034 3.966 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.085 0.915 24 C -0.190 4.190 25 N -0.540 5.540 26 Si 0.724 3.276 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.214 1.214 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.224 0.776 38 H 0.177 0.823 39 H 0.226 0.774 40 H 0.169 0.831 41 H 0.046 0.954 42 H 0.115 0.885 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.435 -10.140 11.976 15.757 hybrid contribution -1.491 -0.225 -0.155 1.516 sum -2.926 -10.365 11.821 15.992 Atomic orbital electron populations 1.21794 0.96150 1.01111 1.00234 1.20462 0.92862 0.93731 0.87164 0.95681 1.22070 0.95169 1.00432 0.99287 1.21706 0.96973 1.00330 0.96720 1.21854 0.97180 0.81143 0.98462 0.90167 1.45727 1.28948 1.08838 1.51009 1.16732 0.84107 0.81942 0.80066 1.90862 1.24491 1.83860 1.40958 1.20534 0.90451 0.95301 1.02373 1.19875 1.01054 0.86084 1.04768 1.19296 1.00832 0.82859 1.05968 1.84004 1.39474 1.22735 1.60550 1.23966 0.87073 0.99799 0.95711 1.20520 1.02893 0.89951 1.08711 1.18987 1.00652 0.85720 1.05632 1.41168 1.23023 1.06857 1.42260 0.74255 1.21234 0.83797 0.97204 0.94359 1.44099 1.02617 1.64869 1.19024 1.19067 0.94915 1.38252 0.86056 0.91531 1.25056 0.97692 0.99293 0.96991 1.69988 1.23757 1.43541 1.16727 0.86368 0.79626 0.79825 0.81806 1.20464 1.21709 1.21443 0.94433 0.91982 0.93120 0.92740 0.93087 0.90824 0.92960 0.77605 0.82314 0.77409 0.83101 0.95390 0.88537 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.95 37.16 0.30 -2.07 16 2 C 0.16 3.11 3.49 -67.60 -0.24 2.87 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -1.95 5.21 -26.61 -0.14 -2.08 16 5 C -0.12 -1.77 5.59 -26.69 -0.15 -1.92 16 6 C 0.12 2.17 2.81 -67.81 -0.19 1.98 16 7 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 8 N -0.70 -11.92 4.91 -55.05 -0.27 -12.19 16 9 C 0.59 11.09 7.75 -12.94 -0.10 10.99 16 10 O -0.53 -11.71 16.53 5.16 0.09 -11.63 16 11 C 0.03 0.44 7.03 -81.86 -0.58 -0.13 16 12 C -0.09 -1.51 10.58 -39.11 -0.41 -1.92 16 13 C -0.04 -0.59 8.20 -38.61 -0.32 -0.91 16 14 O -0.17 -2.35 10.68 3.20 0.03 -2.32 16 15 C 0.00 0.02 12.02 29.40 0.35 0.38 16 16 C -0.20 -2.19 10.89 -39.70 -0.43 -2.62 16 17 C 0.00 0.04 8.11 -83.96 -0.68 -0.64 16 18 N -0.53 -7.39 6.08 -7.04 -0.04 -7.44 16 19 H 0.42 4.72 8.16 -40.82 -0.33 4.38 16 20 C 0.16 3.71 4.90 -3.56 -0.02 3.70 16 21 N -0.58 -13.42 2.92 -164.56 -0.48 -13.90 16 22 C -0.25 -6.57 8.58 -15.06 -0.13 -6.69 16 23 H 0.07 1.70 6.23 -52.49 -0.33 1.37 16 24 C 0.01 0.25 4.95 -17.43 -0.09 0.17 16 25 N -0.90 -26.13 11.23 55.49 0.62 -25.51 16 26 Si 0.89 22.14 29.58 -169.99 -5.03 17.11 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.20 7.64 -51.93 -0.40 0.81 16 32 H 0.05 0.88 7.42 -51.93 -0.39 0.50 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.73 6.40 -51.93 -0.33 0.40 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 5.80 5.86 -40.82 -0.24 5.56 16 38 H 0.16 2.50 8.06 -52.48 -0.42 2.08 16 39 H 0.21 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.10 2.66 6.16 -51.93 -0.32 2.34 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 348.06 15.07 5.25 5.25 Total: -1.00 -32.79 348.06 -8.32 -41.11 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.67 Total: 8.42 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.82 Total: 1.10 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.17 Total: -59.03 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.12 Total: -13.95 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.79 -8.32 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071546986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.760 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds