Wall clock time and date at job start Tue Mar 31 2020 12:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.58487 * 2 1 4 4 C 1.53191 * 109.58708 * 120.28495 * 2 1 3 5 5 C 1.53046 * 109.31305 * 174.56756 * 4 2 1 6 6 C 1.53042 * 109.53294 * 298.63444 * 5 4 2 7 7 H 1.09002 * 109.49106 * 181.31744 * 6 5 4 8 8 N 1.46502 * 109.50002 * 301.41102 * 6 5 4 9 9 C 1.34770 * 120.00416 * 205.00346 * 8 6 5 10 10 O 1.21736 * 119.99628 * 359.97438 * 9 8 6 11 11 C 1.46493 * 120.00332 * 180.02562 * 9 8 6 12 12 C 1.37780 * 125.85801 * 180.02562 * 11 9 8 13 13 C 1.39933 * 107.68543 * 179.97438 * 12 11 9 14 14 O 1.35121 * 145.13747 * 180.02562 * 13 12 11 15 15 C 1.34380 * 109.61993 * 179.97438 * 14 13 12 16 16 C 1.34462 * 109.44992 * 359.97438 * 15 14 13 17 17 C 1.39138 * 107.40568 * 359.97438 * 13 12 11 18 18 N 1.37106 * 108.10721 * 359.77279 * 17 13 12 19 19 H 0.97003 * 125.74649 * 180.26330 * 18 17 13 20 20 C 1.53184 * 109.31326 * 61.36731 * 6 5 4 21 21 N 1.46924 * 109.58805 * 239.71911 * 2 1 3 22 22 C 1.36937 * 120.63296 * 6.46665 * 21 2 1 23 23 H 1.07999 * 119.99696 * 330.41388 * 22 21 2 24 24 C 1.38810 * 120.00670 * 150.40904 * 22 21 2 25 25 N 1.31624 * 119.99291 * 344.61395 * 24 22 21 26 26 Si 1.86796 * 120.00435 * 164.61027 * 24 22 21 27 27 H 1.48498 * 109.46975 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47091 * 119.99903 * 26 24 22 29 29 H 1.48491 * 109.47212 * 240.00025 * 26 24 22 30 30 H 1.09000 * 109.47414 * 299.99641 * 1 2 3 31 31 H 1.09005 * 109.46954 * 59.99805 * 1 2 3 32 32 H 1.09002 * 109.47095 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.49579 * 294.51851 * 4 2 1 34 34 H 1.08998 * 109.49786 * 54.61606 * 4 2 1 35 35 H 1.08997 * 109.46144 * 58.65742 * 5 4 2 36 36 H 1.09005 * 109.45761 * 178.61770 * 5 4 2 37 37 H 0.97003 * 119.99582 * 25.00522 * 8 6 5 38 38 H 1.08003 * 126.15715 * 359.94178 * 12 11 9 39 39 H 1.08006 * 125.27229 * 179.97438 * 15 14 13 40 40 H 1.07997 * 126.41536 * 180.02562 * 16 15 14 41 41 H 1.08998 * 109.58804 * 65.14991 * 20 6 5 42 42 H 1.09005 * 109.58608 * 185.43108 * 20 6 5 43 43 H 0.97004 * 119.99680 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5679 -0.8433 1.1729 6 6 3.9603 -1.6608 -0.0600 7 1 5.0449 -1.7624 -0.0988 8 7 3.3466 -2.9887 0.0181 9 6 3.9060 -4.0289 -0.6311 10 8 4.9210 -3.8648 -1.2829 11 6 3.2919 -5.3567 -0.5535 12 6 3.7594 -6.4991 -1.1657 13 6 2.8875 -7.5436 -0.8388 14 8 2.6254 -8.8597 -0.9973 15 6 1.5110 -9.1826 -0.3194 16 6 1.0263 -8.0880 0.2928 17 6 1.8920 -7.0151 -0.0231 18 7 2.1486 -5.6796 0.1514 19 1 1.6158 -5.0644 0.6793 20 6 3.4685 -0.9435 -1.3210 21 7 2.0225 -0.6980 -1.1954 22 6 1.1534 -1.1128 -2.1689 23 1 0.1391 -1.3782 -1.9098 24 6 1.5760 -1.1920 -3.4888 25 7 2.6886 -0.5950 -3.8604 26 14 0.5657 -2.1459 -4.7373 27 1 -0.6316 -2.7187 -4.0714 28 1 0.1363 -1.2335 -5.8274 29 1 1.3890 -3.2432 -5.3057 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7638 -0.1655 2.1371 34 1 1.6050 -1.7246 1.2921 35 1 4.0045 0.1528 1.1023 36 1 3.9381 -1.3391 2.0703 37 1 2.5376 -3.1193 0.5371 38 1 4.6399 -6.5746 -1.7866 39 1 1.0727 -10.1687 -0.2734 40 1 0.1417 -8.0375 0.9102 41 1 3.9920 0.0065 -1.4287 42 1 3.6599 -1.5672 -2.1943 43 1 2.9837 -0.6500 -4.7828 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071546986.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:10 Heat of formation + Delta-G solvation = 26.874776 kcal Electronic energy + Delta-G solvation = -27448.626109 eV Core-core repulsion = 23689.331423 eV Total energy + Delta-G solvation = -3759.294686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.90267 -41.36284 -40.05070 -38.91137 -35.87564 -34.53962 -33.33622 -32.49203 -31.76245 -31.51849 -29.31571 -27.84380 -26.78876 -24.78455 -23.87433 -22.67929 -22.15842 -21.72317 -21.36517 -20.42774 -19.47395 -18.33360 -18.06718 -17.28535 -17.25997 -16.75303 -16.43870 -16.05467 -15.84174 -15.58448 -15.23939 -14.88925 -14.75887 -14.60179 -14.47014 -14.16538 -14.02953 -13.68179 -13.62793 -13.02374 -12.90233 -12.77818 -12.66128 -12.55715 -12.43333 -12.14018 -12.08242 -11.59782 -11.33163 -11.17458 -11.06430 -11.05990 -10.55592 -10.09365 -9.65183 -8.88118 -8.57840 -7.84167 -5.28874 -0.02848 1.22542 1.36717 1.41274 1.47541 1.49805 1.70385 1.82451 2.27060 2.40216 2.47971 3.32573 3.61522 3.62822 3.77315 3.96120 4.01730 4.08638 4.17078 4.31802 4.47334 4.49136 4.63768 4.68997 4.75138 4.76939 4.79813 4.94912 5.01310 5.03073 5.05782 5.11256 5.25004 5.30697 5.44508 5.52673 5.56498 5.59474 5.63487 5.72214 5.74325 6.13820 6.33636 6.43066 6.55508 7.15690 7.17425 7.91596 8.42679 9.21348 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.004947 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.866907 B = 5659.139767 C = 6477.039120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.014 0.986 4 C -0.119 4.119 5 C -0.111 4.111 6 C 0.128 3.872 7 H 0.072 0.928 8 N -0.683 5.683 9 C 0.584 3.416 10 O -0.572 6.572 11 C 0.001 3.999 12 C -0.102 4.102 13 C -0.076 4.076 14 O -0.186 6.186 15 C 0.027 3.973 16 C -0.212 4.212 17 C 0.012 3.988 18 N -0.516 5.516 19 H 0.432 0.568 20 C 0.170 3.830 21 N -0.594 5.594 22 C -0.234 4.234 23 H 0.076 0.924 24 C -0.052 4.052 25 N -0.934 5.934 26 Si 0.943 3.057 27 H -0.261 1.261 28 H -0.293 1.293 29 H -0.306 1.306 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.403 0.597 38 H 0.151 0.849 39 H 0.262 0.738 40 H 0.186 0.814 41 H 0.001 0.999 42 H 0.046 0.954 43 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.240 -12.054 16.305 20.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.032 0.968 4 C -0.158 4.158 5 C -0.149 4.149 6 C 0.022 3.978 7 H 0.090 0.910 8 N -0.333 5.333 9 C 0.371 3.629 10 O -0.452 6.452 11 C -0.112 4.112 12 C -0.130 4.130 13 C -0.127 4.127 14 O -0.085 6.085 15 C -0.040 4.040 16 C -0.233 4.233 17 C -0.102 4.102 18 N -0.121 5.121 19 H 0.273 0.727 20 C 0.043 3.957 21 N -0.318 5.318 22 C -0.364 4.364 23 H 0.094 0.906 24 C -0.247 4.247 25 N -0.581 5.581 26 Si 0.774 3.226 27 H -0.185 1.185 28 H -0.220 1.220 29 H -0.234 1.234 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.240 0.760 38 H 0.169 0.831 39 H 0.278 0.722 40 H 0.203 0.797 41 H 0.019 0.981 42 H 0.064 0.936 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.380 -11.918 15.631 20.138 hybrid contribution -0.661 0.236 -1.211 1.400 sum -5.040 -11.682 14.419 19.230 Atomic orbital electron populations 1.21729 0.94742 1.01331 1.00809 1.20781 0.94131 0.93307 0.86999 0.96805 1.21968 0.94675 1.01017 0.98167 1.21686 0.97323 1.00041 0.95802 1.21584 0.96681 0.81641 0.97887 0.91040 1.45565 1.29225 1.07960 1.50571 1.17057 0.83604 0.83006 0.79236 1.90827 1.26650 1.84757 1.42966 1.20053 0.92250 0.94178 1.04758 1.19974 1.01253 0.87164 1.04615 1.19311 1.01719 0.83898 1.07761 1.84016 1.41186 1.21763 1.61512 1.25142 0.84712 1.01648 0.92512 1.21011 1.03829 0.88585 1.09826 1.19574 1.00558 0.85805 1.04283 1.41017 1.22137 1.07252 1.41692 0.72712 1.20907 0.84245 0.95480 0.95105 1.44308 1.02104 1.65559 1.19859 1.19398 0.95279 1.35477 0.86292 0.90611 1.25695 0.98865 1.01213 0.98945 1.70148 1.25740 1.46109 1.16152 0.85546 0.78775 0.78166 0.80143 1.18497 1.22036 1.23449 0.90556 0.94779 0.92971 0.88938 0.91903 0.90544 0.89399 0.75979 0.83129 0.72207 0.79656 0.98123 0.93597 0.94837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 7.95 71.98 0.57 -3.55 16 2 C 0.15 5.48 3.49 44.97 0.16 5.64 16 3 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 4 C -0.12 -3.08 5.21 30.67 0.16 -2.92 16 5 C -0.11 -2.97 5.59 30.62 0.17 -2.80 16 6 C 0.13 4.67 2.81 45.07 0.13 4.80 16 7 H 0.07 2.75 7.58 -2.39 -0.02 2.73 16 8 N -0.68 -23.20 4.91 -446.29 -2.19 -25.39 16 9 C 0.58 22.87 7.75 86.40 0.67 23.54 16 10 O -0.57 -27.25 16.53 -4.46 -0.07 -27.33 16 11 C 0.00 0.02 7.03 40.19 0.28 0.30 16 12 C -0.10 -3.54 10.58 22.57 0.24 -3.30 16 13 C -0.08 -2.34 8.20 22.90 0.19 -2.15 16 14 O -0.19 -4.81 10.68 -11.48 -0.12 -4.94 16 15 C 0.03 0.42 12.02 66.96 0.80 1.22 16 16 C -0.21 -3.76 10.89 22.19 0.24 -3.52 16 17 C 0.01 0.32 8.11 39.32 0.32 0.64 16 18 N -0.52 -13.69 6.08 -176.20 -1.07 -14.76 16 19 H 0.43 8.68 8.16 -92.71 -0.76 7.92 16 20 C 0.17 8.19 4.90 86.31 0.42 8.61 16 21 N -0.59 -27.56 2.92 -674.54 -1.97 -29.53 16 22 C -0.23 -12.22 8.58 84.03 0.72 -11.50 16 23 H 0.08 3.79 6.23 -2.91 -0.02 3.77 16 24 C -0.05 -2.97 4.95 84.86 0.42 -2.55 16 25 N -0.93 -57.66 11.23 21.65 0.24 -57.42 16 26 Si 0.94 46.88 29.58 68.60 2.03 48.91 16 27 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 28 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 29 H -0.31 -16.01 7.11 99.48 0.71 -15.31 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.03 1.26 7.64 -2.38 -0.02 1.24 16 32 H 0.05 1.65 7.42 -2.39 -0.02 1.63 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.50 6.40 -2.39 -0.02 1.49 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.40 11.20 5.86 -92.71 -0.54 10.65 16 38 H 0.15 5.20 8.06 -2.91 -0.02 5.18 16 39 H 0.26 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.19 1.96 8.06 -2.91 -0.02 1.93 16 41 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 42 H 0.05 2.70 6.16 -2.38 -0.01 2.68 16 43 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -78.16 348.06 2.10 -76.06 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.24 Total: 21.91 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 5.49 Total: 12.48 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -4.99 Total: -127.09 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.20 Total: -32.26 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -78.16 2.10 -76.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071546986.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.935 kcal (2) G-P(sol) polarization free energy of solvation -78.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds