Wall clock time and date at job start Tue Mar 31 2020 12:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 O 1.42904 * 109.47353 * 239.99978 * 2 1 3 5 5 C 1.35659 * 116.99959 * 274.11016 * 4 2 1 6 6 C 1.38944 * 120.58093 * 5.79240 * 5 4 2 7 7 N 1.31628 * 120.79356 * 179.73314 * 6 5 4 8 8 C 1.31908 * 122.14934 * 0.59068 * 7 6 5 9 9 C 1.37959 * 121.06875 * 359.68082 * 8 7 6 10 10 C 1.39958 * 119.07608 * 0.02562 * 9 8 7 11 11 C 1.47835 * 120.96821 * 180.02562 * 10 9 8 12 12 O 1.21550 * 119.99915 * 238.11478 * 11 10 9 13 13 N 1.34778 * 120.00116 * 58.10610 * 11 10 9 14 14 C 1.46503 * 119.99795 * 174.91450 * 13 11 10 15 15 C 1.50708 * 109.46891 * 90.00685 * 14 13 11 16 16 H 1.08005 * 119.99765 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00089 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00004 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 120.00097 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47185 * 89.99901 * 19 17 15 21 21 H 1.48502 * 109.47251 * 210.00367 * 19 17 15 22 22 H 1.48499 * 109.46748 * 330.00223 * 19 17 15 23 23 C 1.46493 * 119.99959 * 354.92030 * 13 11 10 24 24 C 1.52999 * 109.47237 * 91.78894 * 23 13 11 25 25 C 1.47197 * 109.47533 * 179.97438 * 24 23 13 26 26 N 7.48507 * 67.43660 * 223.89315 * 2 1 3 27 27 H 1.09001 * 109.46784 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47084 * 60.00090 * 1 2 3 29 29 H 1.08996 * 109.46887 * 300.00067 * 1 2 3 30 30 H 1.08995 * 109.47591 * 119.99772 * 2 1 3 31 31 H 1.08996 * 109.47751 * 59.99831 * 3 2 1 32 32 H 1.09006 * 109.47345 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47359 * 299.99967 * 3 2 1 34 34 H 1.08006 * 119.60408 * 0.02562 * 6 5 4 35 35 H 1.07991 * 119.46215 * 179.70282 * 8 7 6 36 36 H 1.08005 * 120.46628 * 180.02562 * 9 8 7 37 37 H 1.08992 * 109.47184 * 210.00096 * 14 13 11 38 38 H 1.08993 * 109.47257 * 330.00902 * 14 13 11 39 39 H 0.97005 * 120.00061 * 180.02562 * 18 17 15 40 40 H 1.09008 * 109.47321 * 211.78027 * 23 13 11 41 41 H 1.08996 * 109.47615 * 331.78667 * 23 13 11 42 42 H 1.09007 * 109.46990 * 299.99910 * 24 23 13 43 43 H 1.09004 * 109.47565 * 59.99590 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.1301 -2.0225 -1.0918 6 6 1.6910 -2.7112 0.0322 7 7 1.8041 -4.0205 0.1071 8 6 2.3429 -4.7351 -0.8619 9 6 2.8112 -4.1356 -2.0128 10 6 2.7094 -2.7460 -2.1457 11 6 3.1972 -2.0604 -3.3612 12 8 4.0454 -1.1944 -3.2714 13 7 2.7014 -2.3955 -4.5688 14 6 3.1013 -1.6417 -5.7597 15 6 4.3264 -2.2752 -6.3672 16 1 4.7636 -3.1514 -5.9115 17 6 4.8897 -1.7356 -7.5040 18 7 5.9590 -2.2881 -8.0339 19 14 4.1340 -0.2197 -8.2918 20 1 4.7487 0.9998 -7.7085 21 1 4.3814 -0.2471 -9.7558 22 1 2.6710 -0.2068 -8.0371 23 6 1.7626 -3.5135 -4.6906 24 6 0.3293 -2.9907 -4.5754 25 6 -0.6141 -4.1139 -4.6984 26 7 -1.3420 -4.9811 -4.7923 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9564 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.2472 -2.1662 0.8523 35 1 2.4183 -5.8068 -0.7526 36 1 3.2503 -4.7302 -2.8003 37 1 2.2888 -1.6521 -6.4861 38 1 3.3254 -0.6124 -5.4798 39 1 6.3556 -1.9083 -8.8336 40 1 1.8963 -3.9965 -5.6586 41 1 1.9512 -4.2347 -3.8955 42 1 0.1954 -2.5076 -3.6074 43 1 0.1405 -2.2694 -5.3706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199157807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:30 Heat of formation + Delta-G solvation = -0.056772 kcal Electronic energy + Delta-G solvation = -26995.895114 eV Core-core repulsion = 23235.432589 eV Total energy + Delta-G solvation = -3760.462525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09518 -39.17899 -38.41755 -36.90670 -35.37063 -33.72386 -32.95327 -32.14100 -31.03784 -30.33044 -28.08880 -27.54979 -25.04635 -24.04449 -23.83488 -22.23775 -21.40622 -19.53153 -18.09851 -17.85105 -17.09914 -16.96160 -16.78405 -16.09275 -15.61265 -15.21527 -14.89023 -14.72379 -14.57164 -14.31757 -14.02161 -13.71161 -13.51116 -13.33159 -13.08248 -12.84792 -12.64535 -12.60657 -12.47724 -12.34101 -12.29491 -12.02582 -11.78655 -11.63444 -11.32179 -11.10594 -11.08394 -10.90916 -10.61117 -10.24816 -9.95915 -9.70610 -9.59366 -9.11083 -8.64043 -8.55108 -7.96257 -6.13438 -4.13195 0.84208 1.03432 2.67114 2.77325 2.87870 3.12447 3.24985 3.30077 3.32788 3.43998 3.67895 4.02537 4.27246 4.34602 4.41990 4.55693 4.62874 4.71881 4.77748 4.83008 4.96414 5.04344 5.11411 5.19440 5.26471 5.32632 5.39913 5.43280 5.50197 5.54118 5.61317 5.72648 5.82567 5.89331 5.95482 5.99546 6.34604 6.54501 6.81635 7.10287 7.14358 7.52057 7.53586 7.77228 7.97857 8.38527 8.72092 8.90032 9.45738 10.99746 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.004804 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.248710 B = 5826.570467 C = 6774.722557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.073 3.927 3 C -0.149 4.149 4 O -0.286 6.286 5 C 0.120 3.880 6 C 0.013 3.987 7 N -0.442 5.442 8 C 0.055 3.945 9 C -0.106 4.106 10 C -0.107 4.107 11 C 0.562 3.438 12 O -0.507 6.507 13 N -0.584 5.584 14 C 0.216 3.784 15 C -0.531 4.531 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.895 5.895 19 Si 0.874 3.126 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.265 1.265 23 C 0.108 3.892 24 C -0.049 4.049 25 C 0.216 3.784 26 N -0.441 5.441 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.035 0.965 38 H 0.040 0.960 39 H 0.265 0.735 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.887 2.291 15.874 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.017 3.983 3 C -0.206 4.206 4 O -0.198 6.198 5 C 0.070 3.930 6 C -0.146 4.146 7 N -0.152 5.152 8 C -0.101 4.101 9 C -0.126 4.126 10 C -0.119 4.119 11 C 0.347 3.653 12 O -0.381 6.381 13 N -0.315 5.315 14 C 0.097 3.903 15 C -0.570 4.570 16 H 0.094 0.906 17 C -0.128 4.128 18 N -0.533 5.533 19 Si 0.700 3.300 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.190 1.190 23 C -0.018 4.018 24 C -0.091 4.091 25 C -0.102 4.102 26 N -0.118 5.118 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.179 0.821 35 H 0.179 0.821 36 H 0.170 0.830 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.622 1.250 16.161 20.544 hybrid contribution 0.261 1.425 -1.075 1.804 sum -12.361 2.675 15.086 19.686 Atomic orbital electron populations 1.22411 0.94766 1.03123 1.03553 1.22559 0.94409 0.94256 0.87075 1.21849 1.02672 0.93018 1.03067 1.86253 1.80016 1.15198 1.38318 1.19982 0.94558 0.84235 0.94180 1.22929 1.03428 0.91067 0.97211 1.67353 1.11735 1.06801 1.29304 1.22545 0.97587 1.00491 0.89478 1.22294 0.98029 0.92745 0.99549 1.20007 1.02068 0.93653 0.96156 1.17753 0.82190 0.83013 0.82362 1.90812 1.30033 1.31504 1.85728 1.47786 1.43390 1.32581 1.07716 1.19766 0.96343 0.92694 0.81542 1.21281 1.10572 1.14701 1.10400 0.90556 1.24837 0.94588 0.96786 0.96625 1.69886 1.20912 1.40699 1.21787 0.86896 0.80179 0.84091 0.78794 1.19871 1.21068 1.18956 1.21599 0.85428 0.89719 1.05075 1.19845 0.91652 0.91837 1.05761 1.29024 0.93888 0.94361 0.92924 1.81212 1.10515 1.10838 1.09224 0.91877 0.91057 0.90728 0.90759 0.90495 0.91229 0.91167 0.82134 0.82065 0.83037 0.94730 0.94251 0.92486 0.88219 0.89758 0.87847 0.86633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 9.20 37.16 0.34 -1.00 16 2 C 0.07 0.68 2.84 -26.73 -0.08 0.61 16 3 C -0.15 -1.27 9.56 37.16 0.36 -0.92 16 4 O -0.29 -3.92 9.25 -18.68 -0.17 -4.10 16 5 C 0.12 1.64 6.65 -38.53 -0.26 1.38 16 6 C 0.01 0.15 9.48 -17.38 -0.16 -0.01 16 7 N -0.44 -5.45 10.32 -13.17 -0.14 -5.58 16 8 C 0.06 0.62 11.16 -17.62 -0.20 0.43 16 9 C -0.11 -1.32 7.78 -39.04 -0.30 -1.63 16 10 C -0.11 -1.61 5.05 -104.53 -0.53 -2.14 16 11 C 0.56 10.76 6.84 -12.33 -0.08 10.68 16 12 O -0.51 -12.07 16.64 5.32 0.09 -11.98 16 13 N -0.58 -10.64 2.46 -176.18 -0.43 -11.07 16 14 C 0.22 4.78 4.20 -5.19 -0.02 4.76 16 15 C -0.53 -14.27 9.94 -34.44 -0.34 -14.61 16 16 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 17 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 18 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 19 Si 0.87 20.49 27.47 -169.99 -4.67 15.82 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 23 C 0.11 1.46 5.14 -4.05 -0.02 1.44 16 24 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 25 C 0.22 2.68 15.43 -20.76 -0.32 2.36 16 26 N -0.44 -6.53 18.54 42.16 0.78 -5.75 16 27 H 0.06 0.47 7.01 -51.93 -0.36 0.11 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.60 6.29 -51.93 -0.33 0.27 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.16 1.44 5.49 -52.48 -0.29 1.16 16 35 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.15 1.71 7.11 -52.48 -0.37 1.33 16 37 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 38 H 0.04 0.94 6.92 -51.93 -0.36 0.58 16 39 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.10 1.40 8.09 -51.92 -0.42 0.98 16 41 H 0.08 1.01 4.17 -51.93 -0.22 0.79 16 42 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 43 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 367.79 15.07 5.54 5.54 Total: -1.00 -34.89 367.79 -5.81 -40.70 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.69 Total: -0.30 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.89 Total: 2.59 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 0.99 Total: -48.27 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.08 Total: -16.08 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.89 -5.81 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199157807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.640 kcal (2) G-P(sol) polarization free energy of solvation -34.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds