Wall clock time and date at job start Tue Mar 31 2020 12:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46917 * 2 1 4 4 O 1.42898 * 109.47176 * 120.00385 * 2 1 3 5 5 C 1.35640 * 116.99981 * 154.98351 * 4 2 1 6 6 C 1.39342 * 120.54569 * 5.20877 * 5 4 2 7 7 C 1.38296 * 118.44303 * 180.28135 * 6 5 4 8 8 C 1.38773 * 119.44511 * 359.46930 * 7 6 5 9 9 N 1.31369 * 121.06269 * 0.27628 * 8 7 6 10 10 C 1.32854 * 121.70119 * 359.97438 * 9 8 7 11 11 C 1.47836 * 119.78812 * 180.02562 * 10 9 8 12 12 O 1.21553 * 120.00294 * 173.92677 * 11 10 9 13 13 N 1.34773 * 119.99497 * 353.92200 * 11 10 9 14 14 C 1.46500 * 120.00395 * 3.25952 * 13 11 10 15 15 C 1.50701 * 109.47294 * 82.76689 * 14 13 11 16 16 H 1.07997 * 119.99854 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99878 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00295 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99799 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46768 * 60.00086 * 19 17 15 21 21 H 1.48496 * 109.47211 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47050 * 300.00192 * 19 17 15 23 23 C 1.46505 * 119.99802 * 183.25913 * 13 11 10 24 24 C 1.52996 * 109.47338 * 94.93979 * 23 13 11 25 25 C 1.47193 * 109.47183 * 179.97438 * 24 23 13 26 26 N 8.99761 * 81.22611 * 124.51928 * 2 1 3 27 27 H 1.08997 * 109.47265 * 300.00076 * 1 2 3 28 28 H 1.09006 * 109.47154 * 59.99847 * 1 2 3 29 29 H 1.08996 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46648 * 240.00286 * 2 1 3 31 31 H 1.09004 * 109.46773 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47318 * 299.99708 * 3 2 1 33 33 H 1.08994 * 109.47096 * 60.00420 * 3 2 1 34 34 H 1.08007 * 120.77727 * 0.03036 * 6 5 4 35 35 H 1.08004 * 120.27662 * 179.73527 * 7 6 5 36 36 H 1.08000 * 119.46764 * 180.25003 * 8 7 6 37 37 H 1.09002 * 109.47710 * 202.77300 * 14 13 11 38 38 H 1.08999 * 109.46859 * 322.76970 * 14 13 11 39 39 H 0.96999 * 120.00332 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.46753 * 214.94025 * 23 13 11 41 41 H 1.08999 * 109.46761 * 334.93545 * 23 13 11 42 42 H 1.09003 * 109.47208 * 300.00517 * 24 23 13 43 43 H 1.09011 * 109.47237 * 59.99801 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2442 -1.2241 1.0978 6 6 4.0424 -1.0329 -0.0282 7 6 5.2949 -1.6188 -0.0549 8 6 5.7225 -2.3644 1.0346 9 7 4.9548 -2.5270 2.0881 10 6 3.7424 -1.9882 2.1583 11 6 2.9143 -2.1979 3.3648 12 8 1.8522 -1.6182 3.4814 13 7 3.3369 -3.0319 4.3355 14 6 4.6487 -3.6753 4.2288 15 6 5.7145 -2.7266 4.7135 16 1 5.4420 -1.7429 5.0663 17 6 7.0376 -3.1145 4.7067 18 7 7.3695 -4.3121 4.2766 19 14 8.3587 -1.9387 5.3082 20 1 8.0964 -1.5831 6.7260 21 1 9.6885 -2.5905 5.1987 22 1 8.3413 -0.7079 4.4777 23 6 2.4844 -3.2950 5.4976 24 6 1.6745 -4.5706 5.2576 25 6 0.8184 -4.8353 6.4254 26 7 0.1575 -5.0391 7.3267 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.6897 -0.4444 -0.8623 35 1 5.9365 -1.4935 -0.9146 36 1 6.7021 -2.8188 1.0158 37 1 4.6612 -4.5784 4.8390 38 1 4.8413 -3.9371 3.1884 39 1 8.3004 -4.5849 4.2714 40 1 3.1067 -3.4210 6.3836 41 1 1.8049 -2.4559 5.6471 42 1 1.0523 -4.4447 4.3715 43 1 2.3540 -5.4098 5.1080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199241278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:19 Heat of formation + Delta-G solvation = 10.740252 kcal Electronic energy + Delta-G solvation = -27059.705845 eV Core-core repulsion = 23299.711513 eV Total energy + Delta-G solvation = -3759.994331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61616 -38.86415 -37.97786 -36.56438 -35.08175 -33.21518 -32.79215 -32.06694 -30.79274 -29.70130 -27.39129 -26.99907 -24.92592 -23.83467 -23.02400 -22.35670 -20.98370 -19.29061 -17.93015 -17.45726 -16.78216 -16.50471 -16.17127 -15.45235 -15.23500 -15.02542 -14.49881 -14.46996 -14.20954 -14.16876 -13.94996 -13.48376 -13.11973 -12.90224 -12.69947 -12.44469 -12.34430 -12.29292 -12.19306 -12.06554 -11.98437 -11.79459 -11.55329 -11.25686 -10.94985 -10.90553 -10.82385 -10.66556 -10.54163 -10.08539 -9.65953 -9.41397 -9.27688 -8.59203 -8.14105 -8.05909 -7.60289 -5.98671 -3.97029 1.16080 1.66303 2.91239 3.00444 3.25783 3.32055 3.36449 3.39381 3.47061 3.73624 4.34239 4.45436 4.49220 4.65490 4.78193 4.87041 4.93844 5.02283 5.07491 5.32009 5.37721 5.38530 5.40848 5.43064 5.45496 5.61217 5.67723 5.71246 5.75411 5.86936 6.02221 6.06296 6.12349 6.27047 6.31503 6.35033 6.78242 6.82684 7.50423 7.56877 7.75900 7.83003 7.94520 8.29988 8.33659 8.46378 8.97088 9.08099 9.62780 11.09302 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008462 B = 0.006100 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3308.081314 B = 4589.241199 C = 7164.785690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 C -0.179 4.179 4 O -0.268 6.268 5 C 0.128 3.872 6 C -0.194 4.194 7 C -0.117 4.117 8 C 0.052 3.948 9 N -0.340 5.340 10 C 0.047 3.953 11 C 0.572 3.428 12 O -0.549 6.549 13 N -0.581 5.581 14 C 0.226 3.774 15 C -0.498 4.498 16 H 0.050 0.950 17 C 0.070 3.930 18 N -0.891 5.891 19 Si 0.882 3.118 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.280 1.280 23 C 0.123 3.877 24 C -0.045 4.045 25 C 0.223 3.777 26 N -0.453 5.453 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.160 0.840 37 H 0.025 0.975 38 H 0.087 0.913 39 H 0.260 0.740 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 5.132 -12.771 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.012 3.988 3 C -0.237 4.237 4 O -0.179 6.179 5 C 0.078 3.922 6 C -0.220 4.220 7 C -0.138 4.138 8 C -0.108 4.108 9 N -0.051 5.051 10 C -0.093 4.093 11 C 0.359 3.641 12 O -0.427 6.427 13 N -0.311 5.311 14 C 0.107 3.893 15 C -0.537 4.537 16 H 0.068 0.932 17 C -0.131 4.131 18 N -0.530 5.530 19 Si 0.711 3.289 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.206 1.206 23 C -0.002 4.002 24 C -0.087 4.087 25 C -0.095 4.095 26 N -0.130 5.130 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.155 0.845 35 H 0.150 0.850 36 H 0.177 0.823 37 H 0.043 0.957 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.126 0.874 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.978 4.519 -10.494 13.935 hybrid contribution 1.300 1.352 -1.020 2.135 sum -6.679 5.871 -11.513 14.548 Atomic orbital electron populations 1.21798 0.92448 1.03212 1.02760 1.22487 0.95750 0.92682 0.87841 1.22379 1.02058 0.96210 1.03035 1.86459 1.27912 1.66584 1.36926 1.20080 0.85583 0.92325 0.94198 1.21569 0.96194 1.05553 0.98694 1.22196 0.95428 0.96345 0.99794 1.22982 1.00434 0.98291 0.89050 1.68857 1.00673 1.13579 1.21953 1.20835 0.93521 1.00260 0.94646 1.17655 0.84438 0.79602 0.82413 1.90737 1.23321 1.49434 1.79246 1.48158 1.19825 1.44484 1.18599 1.20181 0.75819 0.92332 1.00983 1.21229 0.91342 1.00400 1.40719 0.93169 1.24716 0.97914 0.94941 0.95572 1.69901 1.17716 1.18216 1.47204 0.86820 0.81292 0.81381 0.79415 1.20512 1.21382 1.20581 1.21155 0.93917 0.95133 0.90037 1.19793 0.96321 1.01912 0.90643 1.29137 0.93363 0.92712 0.94303 1.81171 1.10930 1.09479 1.11437 0.91224 0.90974 0.91636 0.91308 0.91965 0.91290 0.91219 0.84544 0.85030 0.82300 0.95656 0.89579 0.93039 0.89512 0.89757 0.87437 0.86856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.56 37.16 0.36 -1.07 16 2 C 0.07 0.79 2.85 -26.73 -0.08 0.72 16 3 C -0.18 -1.80 9.19 37.16 0.34 -1.46 16 4 O -0.27 -4.39 7.88 -40.48 -0.32 -4.71 16 5 C 0.13 2.17 6.62 -38.55 -0.26 1.92 16 6 C -0.19 -2.62 8.34 -39.15 -0.33 -2.95 16 7 C -0.12 -1.56 10.10 -39.36 -0.40 -1.96 16 8 C 0.05 0.87 11.17 -17.55 -0.20 0.68 16 9 N -0.34 -6.82 4.99 -9.71 -0.05 -6.87 16 10 C 0.05 0.92 6.64 -82.88 -0.55 0.37 16 11 C 0.57 11.90 7.58 -12.34 -0.09 11.81 16 12 O -0.55 -11.98 14.65 -16.55 -0.24 -12.22 16 13 N -0.58 -11.59 2.48 -176.17 -0.44 -12.03 16 14 C 0.23 5.08 4.79 -5.19 -0.02 5.05 16 15 C -0.50 -12.55 7.99 -34.44 -0.28 -12.82 16 16 H 0.05 1.34 7.81 -52.49 -0.41 0.93 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 18 N -0.89 -23.45 13.29 55.43 0.74 -22.71 16 19 Si 0.88 20.46 29.54 -169.99 -5.02 15.44 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.12 2.05 5.41 -4.04 -0.02 2.03 16 24 C -0.05 -0.61 6.02 -29.52 -0.18 -0.79 16 25 C 0.22 3.30 15.43 -20.76 -0.32 2.98 16 26 N -0.45 -7.71 18.54 42.16 0.78 -6.93 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.68 6.33 -51.92 -0.33 0.35 16 31 H 0.06 0.65 6.96 -51.93 -0.36 0.29 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.14 1.42 5.61 -52.48 -0.29 1.12 16 35 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 36 H 0.16 2.53 8.06 -52.49 -0.42 2.11 16 37 H 0.03 0.59 8.02 -51.93 -0.42 0.17 16 38 H 0.09 2.02 5.21 -52.69 -0.27 1.75 16 39 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 40 H 0.09 1.44 8.11 -51.93 -0.42 1.02 16 41 H 0.08 1.44 7.24 -51.93 -0.38 1.06 16 42 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.11 1.41 8.14 -51.92 -0.42 0.99 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -30.87 366.55 -6.96 -37.84 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.82 Total: 0.46 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -2.12 Total: 6.21 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 1.03 Total: -48.54 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.56 Total: -16.94 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.87 -6.96 -37.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199241278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.578 kcal (2) G-P(sol) polarization free energy of solvation -30.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds