Wall clock time and date at job start Tue Mar 31 2020 12:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46917 * 2 1 4 4 O 1.42898 * 109.47176 * 120.00385 * 2 1 3 5 5 C 1.35640 * 116.99981 * 154.98351 * 4 2 1 6 6 C 1.39342 * 120.54569 * 5.20877 * 5 4 2 7 7 C 1.38296 * 118.44303 * 180.28135 * 6 5 4 8 8 C 1.38773 * 119.44511 * 359.46930 * 7 6 5 9 9 N 1.31369 * 121.06269 * 0.27628 * 8 7 6 10 10 C 1.32854 * 121.70119 * 359.97438 * 9 8 7 11 11 C 1.47836 * 119.78812 * 180.02562 * 10 9 8 12 12 O 1.21553 * 120.00294 * 173.92677 * 11 10 9 13 13 N 1.34773 * 119.99497 * 353.92200 * 11 10 9 14 14 C 1.46500 * 120.00395 * 3.25952 * 13 11 10 15 15 C 1.50701 * 109.47294 * 82.76689 * 14 13 11 16 16 H 1.07997 * 119.99854 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99878 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00295 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99799 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46768 * 60.00086 * 19 17 15 21 21 H 1.48496 * 109.47211 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47050 * 300.00192 * 19 17 15 23 23 C 1.46505 * 119.99802 * 183.25913 * 13 11 10 24 24 C 1.52996 * 109.47338 * 94.93979 * 23 13 11 25 25 C 1.47193 * 109.47183 * 179.97438 * 24 23 13 26 26 N 8.99761 * 81.22611 * 124.51928 * 2 1 3 27 27 H 1.08997 * 109.47265 * 300.00076 * 1 2 3 28 28 H 1.09006 * 109.47154 * 59.99847 * 1 2 3 29 29 H 1.08996 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46648 * 240.00286 * 2 1 3 31 31 H 1.09004 * 109.46773 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47318 * 299.99708 * 3 2 1 33 33 H 1.08994 * 109.47096 * 60.00420 * 3 2 1 34 34 H 1.08007 * 120.77727 * 0.03036 * 6 5 4 35 35 H 1.08004 * 120.27662 * 179.73527 * 7 6 5 36 36 H 1.08000 * 119.46764 * 180.25003 * 8 7 6 37 37 H 1.09002 * 109.47710 * 202.77300 * 14 13 11 38 38 H 1.08999 * 109.46859 * 322.76970 * 14 13 11 39 39 H 0.96999 * 120.00332 * 179.97438 * 18 17 15 40 40 H 1.09006 * 109.46753 * 214.94025 * 23 13 11 41 41 H 1.08999 * 109.46761 * 334.93545 * 23 13 11 42 42 H 1.09003 * 109.47208 * 300.00517 * 24 23 13 43 43 H 1.09011 * 109.47237 * 59.99801 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2442 -1.2241 1.0978 6 6 4.0424 -1.0329 -0.0282 7 6 5.2949 -1.6188 -0.0549 8 6 5.7225 -2.3644 1.0346 9 7 4.9548 -2.5270 2.0881 10 6 3.7424 -1.9882 2.1583 11 6 2.9143 -2.1979 3.3648 12 8 1.8522 -1.6182 3.4814 13 7 3.3369 -3.0319 4.3355 14 6 4.6487 -3.6753 4.2288 15 6 5.7145 -2.7266 4.7135 16 1 5.4420 -1.7429 5.0663 17 6 7.0376 -3.1145 4.7067 18 7 7.3695 -4.3121 4.2766 19 14 8.3587 -1.9387 5.3082 20 1 8.0964 -1.5831 6.7260 21 1 9.6885 -2.5905 5.1987 22 1 8.3413 -0.7079 4.4777 23 6 2.4844 -3.2950 5.4976 24 6 1.6745 -4.5706 5.2576 25 6 0.8184 -4.8353 6.4254 26 7 0.1575 -5.0391 7.3267 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.6897 -0.4444 -0.8623 35 1 5.9365 -1.4935 -0.9146 36 1 6.7021 -2.8188 1.0158 37 1 4.6612 -4.5784 4.8390 38 1 4.8413 -3.9371 3.1884 39 1 8.3004 -4.5849 4.2714 40 1 3.1067 -3.4210 6.3836 41 1 1.8049 -2.4559 5.6471 42 1 1.0523 -4.4447 4.3715 43 1 2.3540 -5.4098 5.1080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199241278.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:18 Heat of formation + Delta-G solvation = -5.325118 kcal Electronic energy + Delta-G solvation = -27060.402491 eV Core-core repulsion = 23299.711513 eV Total energy + Delta-G solvation = -3760.690978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.87706 -40.24810 -39.21845 -37.89502 -36.64979 -34.54354 -34.14476 -33.44732 -32.15553 -30.94590 -28.82381 -28.15725 -26.24891 -25.13585 -24.64356 -23.72049 -21.96961 -20.69690 -19.07575 -18.82612 -18.25526 -18.06805 -17.68150 -16.70128 -16.50568 -16.42188 -16.09046 -15.75107 -15.57085 -15.30678 -15.10719 -14.76430 -14.37495 -14.25698 -13.95683 -13.88839 -13.58643 -13.50838 -13.38421 -13.20613 -13.11962 -12.99856 -12.84934 -12.72254 -12.66167 -12.41503 -12.07015 -11.88097 -11.76531 -11.63749 -11.53464 -10.87555 -10.61954 -10.39405 -9.67959 -9.41573 -9.13409 -7.94872 -5.97938 -0.09298 0.47849 1.45115 1.47868 1.53154 1.63860 1.77219 2.00152 2.20242 2.34313 2.56029 3.05244 3.18144 3.39316 3.54772 3.75623 3.86689 3.91188 4.04473 4.08050 4.15144 4.19069 4.25841 4.37415 4.54180 4.62913 4.72312 4.82002 4.85341 4.89762 4.92039 5.02935 5.04666 5.14912 5.16116 5.27651 5.31983 5.56919 5.71844 6.02885 6.09686 6.41843 6.46177 6.53554 6.65273 7.03523 7.18309 7.48459 7.65253 9.11698 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008462 B = 0.006100 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3308.081314 B = 4589.241199 C = 7164.785690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 C -0.175 4.175 4 O -0.296 6.296 5 C 0.128 3.872 6 C -0.182 4.182 7 C -0.090 4.090 8 C 0.031 3.969 9 N -0.377 5.377 10 C 0.002 3.998 11 C 0.565 3.435 12 O -0.569 6.569 13 N -0.584 5.584 14 C 0.242 3.758 15 C -0.500 4.500 16 H 0.028 0.972 17 C 0.039 3.961 18 N -0.910 5.910 19 Si 0.928 3.072 20 H -0.284 1.284 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.120 3.880 24 C -0.028 4.028 25 C 0.246 3.754 26 N -0.487 5.487 27 H 0.053 0.947 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.177 0.823 35 H 0.179 0.821 36 H 0.160 0.840 37 H 0.016 0.984 38 H 0.082 0.918 39 H 0.260 0.740 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.532 6.123 -15.566 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.001 3.999 3 C -0.233 4.233 4 O -0.207 6.207 5 C 0.077 3.923 6 C -0.208 4.208 7 C -0.110 4.110 8 C -0.130 4.130 9 N -0.088 5.088 10 C -0.135 4.135 11 C 0.354 3.646 12 O -0.450 6.450 13 N -0.313 5.313 14 C 0.122 3.878 15 C -0.539 4.539 16 H 0.046 0.954 17 C -0.161 4.161 18 N -0.551 5.551 19 Si 0.756 3.244 20 H -0.210 1.210 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.005 4.005 24 C -0.070 4.070 25 C -0.071 4.071 26 N -0.166 5.166 27 H 0.072 0.928 28 H 0.124 0.876 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.194 0.806 35 H 0.197 0.803 36 H 0.178 0.822 37 H 0.034 0.966 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.138 0.862 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.810 5.513 -13.272 16.356 hybrid contribution 1.204 1.147 -0.280 1.686 sum -6.607 6.659 -13.552 16.482 Atomic orbital electron populations 1.21842 0.91503 1.02999 1.03660 1.22915 0.96594 0.93288 0.87060 1.22367 1.01740 0.95317 1.03833 1.86436 1.27768 1.66802 1.39730 1.20179 0.86229 0.91535 0.94370 1.21992 0.95555 1.04848 0.98374 1.22585 0.95497 0.93302 0.99599 1.23204 1.00420 0.99583 0.89772 1.68575 1.01341 1.14905 1.24016 1.20705 0.94065 1.03217 0.95509 1.18013 0.84479 0.79134 0.82974 1.90698 1.24200 1.50173 1.79900 1.48095 1.19396 1.44442 1.19385 1.19842 0.76335 0.91344 1.00314 1.21276 0.92352 0.99709 1.40553 0.95378 1.25142 0.99148 0.95943 0.95864 1.69964 1.17917 1.19089 1.48132 0.86108 0.79844 0.79918 0.78533 1.20966 1.20697 1.20841 1.21226 0.93731 0.96457 0.89081 1.19669 0.96103 1.00731 0.90449 1.29167 0.92543 0.91610 0.93763 1.81194 1.12208 1.10706 1.12449 0.92790 0.87555 0.92425 0.89035 0.92353 0.87999 0.92936 0.80627 0.80329 0.82231 0.96611 0.90047 0.93037 0.89803 0.90396 0.86158 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.56 71.98 0.69 -1.83 16 2 C 0.06 1.16 2.85 30.59 0.09 1.25 16 3 C -0.18 -3.02 9.19 71.98 0.66 -2.36 16 4 O -0.30 -9.49 7.88 -68.63 -0.54 -10.03 16 5 C 0.13 4.19 6.62 22.94 0.15 4.34 16 6 C -0.18 -4.31 8.34 22.55 0.19 -4.12 16 7 C -0.09 -2.08 10.10 22.41 0.23 -1.86 16 8 C 0.03 1.02 11.17 84.89 0.95 1.97 16 9 N -0.38 -15.32 4.99 -184.62 -0.92 -16.24 16 10 C 0.00 0.10 6.64 41.93 0.28 0.38 16 11 C 0.57 24.28 7.58 86.78 0.66 24.94 16 12 O -0.57 -25.63 14.65 17.02 0.25 -25.38 16 13 N -0.58 -24.02 2.48 -829.57 -2.06 -26.08 16 14 C 0.24 11.18 4.79 85.63 0.41 11.59 16 15 C -0.50 -25.81 7.99 25.60 0.20 -25.60 16 16 H 0.03 1.54 7.81 -2.91 -0.02 1.52 16 17 C 0.04 1.99 5.46 84.66 0.46 2.45 16 18 N -0.91 -48.24 13.29 21.45 0.28 -47.96 16 19 Si 0.93 42.22 29.54 68.60 2.03 44.25 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 C 0.12 4.10 5.41 86.38 0.47 4.57 16 24 C -0.03 -0.76 6.02 28.79 0.17 -0.59 16 25 C 0.25 7.22 15.43 89.44 1.38 8.60 16 26 N -0.49 -16.57 18.54 20.00 0.37 -16.20 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.44 6.33 -2.38 -0.02 1.42 16 31 H 0.06 1.05 6.96 -2.38 -0.02 1.03 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.18 2.72 5.61 -2.91 -0.02 2.71 16 35 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 36 H 0.16 4.99 8.06 -2.91 -0.02 4.97 16 37 H 0.02 0.75 8.02 -2.39 -0.02 0.73 16 38 H 0.08 3.94 5.21 -3.90 -0.02 3.92 16 39 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 40 H 0.08 2.88 8.11 -2.38 -0.02 2.86 16 41 H 0.08 2.75 7.24 -2.39 -0.02 2.74 16 42 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.13 3.13 8.14 -2.38 -0.02 3.11 16 Total: -1.00 -69.21 366.55 7.42 -61.79 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.02 Total: 12.13 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 6.99 Total: 23.72 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -2.32 Total: -106.48 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.29 Total: -35.41 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -69.21 7.42 -61.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199241278.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.461 kcal (2) G-P(sol) polarization free energy of solvation -69.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds