Wall clock time and date at job start Tue Mar 31 2020 11:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 N 1.46503 * 109.46852 * 120.00303 * 2 1 3 5 5 C 1.34599 * 119.47592 * 119.72646 * 4 2 1 6 6 C 1.37993 * 120.45595 * 179.76633 * 5 4 2 7 7 C 1.47456 * 120.25972 * 180.24999 * 6 5 4 8 8 O 1.21602 * 120.00674 * 255.34181 * 7 6 5 9 9 N 1.34781 * 119.99561 * 75.34468 * 7 6 5 10 10 C 1.46502 * 119.99804 * 185.27783 * 9 7 6 11 11 C 1.50695 * 109.47424 * 89.99665 * 10 9 7 12 12 H 1.07996 * 120.00333 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99968 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00061 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00157 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47184 * 89.99929 * 15 13 11 17 17 H 1.48496 * 109.47435 * 210.00410 * 15 13 11 18 18 H 1.48506 * 109.46959 * 330.00542 * 15 13 11 19 19 C 1.46498 * 120.00039 * 5.26668 * 9 7 6 20 20 C 1.53009 * 109.46901 * 94.89992 * 19 9 7 21 21 C 1.47193 * 109.46864 * 179.97438 * 20 19 9 22 22 N 6.76340 * 157.07202 * 77.68910 * 2 1 3 23 23 C 1.41598 * 119.48654 * 0.50142 * 6 5 4 24 24 C 1.35979 * 119.00941 * 359.75283 * 23 6 5 25 25 C 1.34537 * 119.47516 * 299.99697 * 4 2 1 26 26 O 1.21961 * 119.74933 * 359.97438 * 25 4 2 27 27 H 1.09001 * 109.46912 * 300.00110 * 1 2 3 28 28 H 1.08991 * 109.47348 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47086 * 59.99498 * 1 2 3 30 30 H 1.09001 * 109.46912 * 239.99890 * 2 1 3 31 31 H 1.09004 * 109.46805 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47338 * 299.99505 * 3 2 1 33 33 H 1.09001 * 109.47350 * 60.00158 * 3 2 1 34 34 H 1.08000 * 119.77196 * 0.02562 * 5 4 2 35 35 H 1.09003 * 109.46919 * 209.99491 * 10 9 7 36 36 H 1.08996 * 109.46792 * 329.98852 * 10 9 7 37 37 H 0.97002 * 119.99724 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.47162 * 214.89580 * 19 9 7 39 39 H 1.08994 * 109.47426 * 334.90447 * 19 9 7 40 40 H 1.08995 * 109.46710 * 300.00395 * 20 19 9 41 41 H 1.08999 * 109.46458 * 59.99617 * 20 19 9 42 42 H 1.07999 * 120.49818 * 179.73331 * 23 6 5 43 43 H 1.07997 * 120.24953 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.7869 -1.7873 1.0604 6 6 3.2617 -2.4508 2.1733 7 6 4.1079 -3.6486 2.0195 8 8 3.6420 -4.7528 2.2253 9 7 5.3979 -3.5195 1.6508 10 6 6.2067 -4.7118 1.3856 11 6 6.0904 -5.0843 -0.0699 12 1 5.4751 -4.4924 -0.7313 13 6 6.7686 -6.1814 -0.5571 14 7 6.6674 -6.5062 -1.8275 15 14 7.8323 -7.2057 0.5870 16 1 7.0131 -8.2894 1.1866 17 1 8.9548 -7.8011 -0.1815 18 1 8.3745 -6.3407 1.6654 19 6 5.9910 -2.1868 1.5150 20 6 6.7031 -1.8106 2.8160 21 6 7.2996 -0.4719 2.6793 22 7 7.7591 0.5618 2.5743 23 6 2.9257 -1.9757 3.4642 24 6 2.1437 -0.8689 3.5766 25 6 1.6869 -0.2220 2.4129 26 8 0.9853 0.7711 2.5084 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.0371 -2.1480 0.0736 35 1 7.2496 -4.5040 1.6252 36 1 5.8500 -5.5372 2.0016 37 1 7.1449 -7.2779 -2.1703 38 1 6.7097 -2.1908 0.6955 39 1 5.2065 -1.4594 1.3068 40 1 5.9845 -1.8067 3.6354 41 1 7.4876 -2.5381 3.0241 42 1 3.2848 -2.4848 4.3463 43 1 1.8756 -0.4890 4.5513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199511178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:40 Heat of formation + Delta-G solvation = -3.677173 kcal Electronic energy + Delta-G solvation = -26833.454986 eV Core-core repulsion = 23072.835468 eV Total energy + Delta-G solvation = -3760.619518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.77742 -39.46420 -36.98133 -36.81955 -35.92898 -35.39215 -32.87417 -32.00027 -31.08869 -30.35037 -27.87283 -27.48290 -24.71078 -24.29653 -23.98002 -22.86728 -21.27002 -19.02564 -17.98169 -17.70849 -17.11742 -16.88384 -16.73566 -16.24236 -15.77199 -15.68535 -14.78552 -14.58754 -14.39560 -14.37886 -13.93636 -13.84826 -13.66844 -13.35611 -13.02175 -12.71754 -12.62599 -12.52019 -12.37545 -12.37216 -12.14234 -11.95677 -11.73959 -11.68252 -11.44660 -11.42167 -11.11388 -10.99234 -10.63917 -10.30809 -10.24287 -9.79141 -9.71070 -9.41368 -8.70520 -8.08757 -7.96037 -6.20676 -4.21217 0.70955 1.55905 2.35456 2.64510 2.75791 3.07056 3.21289 3.26474 3.29628 3.41134 3.56309 4.06492 4.29101 4.31824 4.43493 4.70587 4.72021 4.77535 4.84987 4.91823 4.97852 5.01643 5.13367 5.13754 5.35529 5.38049 5.42608 5.54962 5.58847 5.67874 5.81753 5.93384 5.94439 5.96419 6.02192 6.11063 6.34911 6.50632 6.78397 6.93909 7.06075 7.45704 7.51566 7.89947 7.92537 8.30723 8.64711 8.80937 9.38722 10.92228 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013109 B = 0.004181 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.402025 B = 6694.665549 C = 7426.669115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 C -0.170 4.170 4 N -0.483 5.483 5 C 0.171 3.829 6 C -0.229 4.229 7 C 0.572 3.428 8 O -0.521 6.521 9 N -0.584 5.584 10 C 0.213 3.787 11 C -0.535 4.535 12 H 0.075 0.925 13 C 0.075 3.925 14 N -0.894 5.894 15 Si 0.875 3.125 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.264 1.264 19 C 0.118 3.882 20 C -0.049 4.049 21 C 0.215 3.785 22 N -0.441 5.441 23 C 0.014 3.986 24 C -0.249 4.249 25 C 0.516 3.484 26 O -0.548 6.548 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.171 0.829 35 H 0.035 0.965 36 H 0.043 0.957 37 H 0.266 0.734 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.139 0.861 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.493 11.372 6.679 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 C -0.227 4.227 4 N -0.192 5.192 5 C 0.039 3.961 6 C -0.238 4.238 7 C 0.357 3.643 8 O -0.396 6.396 9 N -0.315 5.315 10 C 0.093 3.907 11 C -0.573 4.573 12 H 0.093 0.907 13 C -0.128 4.128 14 N -0.532 5.532 15 Si 0.701 3.299 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.189 1.189 19 C -0.009 4.009 20 C -0.090 4.090 21 C -0.103 4.103 22 N -0.119 5.119 23 C -0.008 4.008 24 C -0.270 4.270 25 C 0.319 3.681 26 O -0.431 6.431 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.188 0.812 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.157 0.843 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.456 12.841 6.504 15.776 hybrid contribution 0.544 -1.234 0.367 1.398 sum -5.911 11.608 6.872 14.728 Atomic orbital electron populations 1.22222 0.93076 1.03003 1.04523 1.21707 0.96404 0.94664 0.85595 1.22214 1.01409 0.94578 1.04544 1.45454 1.40939 1.23081 1.09679 1.22259 0.88245 0.84938 1.00612 1.19619 1.09396 1.01666 0.93101 1.17660 0.81678 0.87477 0.77524 1.90814 1.72684 1.26604 1.49517 1.47879 1.10387 1.07161 1.66074 1.19786 0.89965 0.82971 0.97971 1.21259 1.30375 1.13202 0.92508 0.90657 1.24838 0.96204 0.96784 0.94966 1.69880 1.42628 1.27329 1.13366 0.86880 0.80503 0.81361 0.81128 1.19827 1.21100 1.18888 1.21325 0.98624 0.85212 0.95693 1.19830 1.01308 0.86145 1.01727 1.29040 0.93312 0.94665 0.93263 1.81221 1.09761 1.12391 1.08497 1.21340 0.90832 0.92386 0.96251 1.21994 1.06281 1.00130 0.98632 1.17136 0.82377 0.85748 0.82817 1.90846 1.39614 1.26626 1.85999 0.89595 0.92223 0.90817 0.88081 0.92243 0.90803 0.89600 0.81195 0.94730 0.93926 0.92417 0.88573 0.90480 0.87458 0.86585 0.84317 0.83176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 9.11 37.16 0.34 -1.26 16 2 C 0.12 1.11 3.20 -67.93 -0.22 0.89 16 3 C -0.17 -1.58 9.11 37.16 0.34 -1.25 16 4 N -0.48 -5.41 2.51 -112.18 -0.28 -5.70 16 5 C 0.17 1.94 8.92 -16.43 -0.15 1.79 16 6 C -0.23 -2.91 4.19 -104.95 -0.44 -3.35 16 7 C 0.57 9.46 7.07 -12.50 -0.09 9.37 16 8 O -0.52 -11.06 16.66 5.28 0.09 -10.97 16 9 N -0.58 -9.41 2.46 -176.32 -0.43 -9.84 16 10 C 0.21 4.33 4.29 -5.19 -0.02 4.31 16 11 C -0.54 -13.48 9.94 -34.44 -0.34 -13.82 16 12 H 0.08 2.07 8.06 -52.49 -0.42 1.64 16 13 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 14 N -0.89 -25.58 13.96 55.43 0.77 -24.81 16 15 Si 0.87 19.65 27.47 -169.99 -4.67 14.98 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 19 C 0.12 1.41 5.32 -4.04 -0.02 1.39 16 20 C -0.05 -0.46 6.03 -29.52 -0.18 -0.64 16 21 C 0.22 2.49 15.43 -20.76 -0.32 2.17 16 22 N -0.44 -6.34 18.54 42.16 0.78 -5.56 16 23 C 0.01 0.15 9.86 -39.11 -0.39 -0.23 16 24 C -0.25 -2.81 9.97 -39.44 -0.39 -3.20 16 25 C 0.52 6.68 6.81 -15.41 -0.10 6.57 16 26 O -0.55 -8.28 13.13 4.95 0.07 -8.21 16 27 H 0.09 1.00 6.10 -51.93 -0.32 0.68 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.55 8.14 -51.92 -0.42 0.12 16 30 H 0.10 0.76 7.70 -51.93 -0.40 0.36 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.00 6.10 -51.93 -0.32 0.68 16 34 H 0.17 1.74 7.80 -52.49 -0.41 1.33 16 35 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 36 H 0.04 0.94 6.78 -51.93 -0.35 0.59 16 37 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.10 1.23 8.11 -51.93 -0.42 0.80 16 39 H 0.08 0.82 5.76 -51.93 -0.30 0.52 16 40 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 367.00 15.07 5.53 5.53 Total: -1.00 -33.63 367.00 -6.08 -39.71 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.86 Total: 0.21 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -2.08 Total: 4.65 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: 0.84 Total: -45.90 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.15 Total: -19.18 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.67 Total: 14.98 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.63 -6.08 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199511178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.038 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds