Wall clock time and date at job start Tue Mar 31 2020 11:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 N 1.46503 * 109.46852 * 120.00303 * 2 1 3 5 5 C 1.34599 * 119.47592 * 119.72646 * 4 2 1 6 6 C 1.37993 * 120.45595 * 179.76633 * 5 4 2 7 7 C 1.47456 * 120.25972 * 180.24999 * 6 5 4 8 8 O 1.21602 * 120.00674 * 255.34181 * 7 6 5 9 9 N 1.34781 * 119.99561 * 75.34468 * 7 6 5 10 10 C 1.46502 * 119.99804 * 185.27783 * 9 7 6 11 11 C 1.50695 * 109.47424 * 89.99665 * 10 9 7 12 12 H 1.07996 * 120.00333 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99968 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00061 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00157 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47184 * 89.99929 * 15 13 11 17 17 H 1.48496 * 109.47435 * 210.00410 * 15 13 11 18 18 H 1.48506 * 109.46959 * 330.00542 * 15 13 11 19 19 C 1.46498 * 120.00039 * 5.26668 * 9 7 6 20 20 C 1.53009 * 109.46901 * 94.89992 * 19 9 7 21 21 C 1.47193 * 109.46864 * 179.97438 * 20 19 9 22 22 N 6.76340 * 157.07202 * 77.68910 * 2 1 3 23 23 C 1.41598 * 119.48654 * 0.50142 * 6 5 4 24 24 C 1.35979 * 119.00941 * 359.75283 * 23 6 5 25 25 C 1.34537 * 119.47516 * 299.99697 * 4 2 1 26 26 O 1.21961 * 119.74933 * 359.97438 * 25 4 2 27 27 H 1.09001 * 109.46912 * 300.00110 * 1 2 3 28 28 H 1.08991 * 109.47348 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47086 * 59.99498 * 1 2 3 30 30 H 1.09001 * 109.46912 * 239.99890 * 2 1 3 31 31 H 1.09004 * 109.46805 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47338 * 299.99505 * 3 2 1 33 33 H 1.09001 * 109.47350 * 60.00158 * 3 2 1 34 34 H 1.08000 * 119.77196 * 0.02562 * 5 4 2 35 35 H 1.09003 * 109.46919 * 209.99491 * 10 9 7 36 36 H 1.08996 * 109.46792 * 329.98852 * 10 9 7 37 37 H 0.97002 * 119.99724 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.47162 * 214.89580 * 19 9 7 39 39 H 1.08994 * 109.47426 * 334.90447 * 19 9 7 40 40 H 1.08995 * 109.46710 * 300.00395 * 20 19 9 41 41 H 1.08999 * 109.46458 * 59.99617 * 20 19 9 42 42 H 1.07999 * 120.49818 * 179.73331 * 23 6 5 43 43 H 1.07997 * 120.24953 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.7869 -1.7873 1.0604 6 6 3.2617 -2.4508 2.1733 7 6 4.1079 -3.6486 2.0195 8 8 3.6420 -4.7528 2.2253 9 7 5.3979 -3.5195 1.6508 10 6 6.2067 -4.7118 1.3856 11 6 6.0904 -5.0843 -0.0699 12 1 5.4751 -4.4924 -0.7313 13 6 6.7686 -6.1814 -0.5571 14 7 6.6674 -6.5062 -1.8275 15 14 7.8323 -7.2057 0.5870 16 1 7.0131 -8.2894 1.1866 17 1 8.9548 -7.8011 -0.1815 18 1 8.3745 -6.3407 1.6654 19 6 5.9910 -2.1868 1.5150 20 6 6.7031 -1.8106 2.8160 21 6 7.2996 -0.4719 2.6793 22 7 7.7591 0.5618 2.5743 23 6 2.9257 -1.9757 3.4642 24 6 2.1437 -0.8689 3.5766 25 6 1.6869 -0.2220 2.4129 26 8 0.9853 0.7711 2.5084 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.0371 -2.1480 0.0736 35 1 7.2496 -4.5040 1.6252 36 1 5.8500 -5.5372 2.0016 37 1 7.1449 -7.2779 -2.1703 38 1 6.7097 -2.1908 0.6955 39 1 5.2065 -1.4594 1.3068 40 1 5.9845 -1.8067 3.6354 41 1 7.4876 -2.5381 3.0241 42 1 3.2848 -2.4848 4.3463 43 1 1.8756 -0.4890 4.5513 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199511178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:39 Heat of formation + Delta-G solvation = -24.291048 kcal Electronic energy + Delta-G solvation = -26834.348870 eV Core-core repulsion = 23072.835468 eV Total energy + Delta-G solvation = -3761.513402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.72788 -40.74675 -38.01262 -37.87933 -36.83223 -36.67575 -34.72156 -32.86214 -32.30995 -31.47261 -29.42344 -28.23406 -25.76066 -25.27477 -25.11752 -24.22670 -22.35391 -20.20938 -19.19355 -18.70302 -18.59459 -18.09598 -17.72759 -17.45188 -16.77727 -16.70972 -16.17050 -15.71295 -15.44996 -15.34787 -15.08419 -15.02283 -14.58307 -14.52125 -14.35642 -13.99858 -13.73149 -13.56844 -13.42694 -13.37189 -13.13587 -13.08927 -12.99073 -12.71764 -12.61740 -12.38315 -12.27190 -12.22096 -11.95226 -11.86983 -11.63352 -11.12872 -10.82689 -10.74872 -10.71243 -9.49157 -8.97827 -8.22778 -6.26869 -0.18846 0.56267 1.39653 1.44613 1.48411 1.54699 1.66047 1.85378 1.88567 2.25056 2.41698 2.57483 3.09605 3.16224 3.46811 3.55671 3.76762 3.88676 3.94664 3.99578 4.06876 4.11192 4.16455 4.24987 4.55859 4.65155 4.68824 4.77721 4.81191 4.82179 4.88143 4.95119 5.03427 5.09882 5.13882 5.17510 5.24848 5.25554 5.46667 5.56462 5.63279 6.00980 6.32591 6.59649 6.64286 6.76708 6.93735 7.27347 7.41547 8.93305 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013109 B = 0.004181 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.402025 B = 6694.665549 C = 7426.669115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 C -0.164 4.164 4 N -0.478 5.478 5 C 0.180 3.820 6 C -0.236 4.236 7 C 0.577 3.423 8 O -0.573 6.573 9 N -0.582 5.582 10 C 0.219 3.781 11 C -0.531 4.531 12 H 0.038 0.962 13 C 0.013 3.987 14 N -0.948 5.948 15 Si 0.936 3.064 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.225 1.225 19 C 0.115 3.885 20 C -0.039 4.039 21 C 0.243 3.757 22 N -0.491 5.491 23 C 0.025 3.975 24 C -0.251 4.251 25 C 0.506 3.494 26 O -0.574 6.574 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.181 0.819 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.265 0.735 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.162 0.838 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 11.936 8.221 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.008 3.992 3 C -0.221 4.221 4 N -0.185 5.185 5 C 0.048 3.952 6 C -0.245 4.245 7 C 0.364 3.636 8 O -0.452 6.452 9 N -0.311 5.311 10 C 0.097 3.903 11 C -0.570 4.570 12 H 0.057 0.943 13 C -0.185 4.185 14 N -0.588 5.588 15 Si 0.760 3.240 16 H -0.205 1.205 17 H -0.214 1.214 18 H -0.148 1.148 19 C -0.010 4.010 20 C -0.080 4.080 21 C -0.074 4.074 22 N -0.169 5.169 23 C 0.003 3.997 24 C -0.272 4.272 25 C 0.310 3.690 26 O -0.460 6.460 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.114 0.886 30 H 0.143 0.857 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.080 0.920 34 H 0.198 0.802 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.180 0.820 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.742 13.470 8.062 16.716 hybrid contribution 0.224 -1.361 -0.216 1.396 sum -5.518 12.109 7.846 15.448 Atomic orbital electron populations 1.22174 0.93026 1.02739 1.04413 1.21987 0.96516 0.94954 0.85705 1.22156 1.01286 0.94356 1.04350 1.45516 1.40256 1.22745 1.10019 1.22352 0.87491 0.84544 1.00808 1.19300 1.09914 1.00820 0.94455 1.18066 0.81678 0.87753 0.76108 1.90793 1.73617 1.28913 1.51872 1.47787 1.10257 1.07580 1.65493 1.19510 0.91972 0.84478 0.94311 1.21597 1.28539 1.12191 0.94629 0.94336 1.25754 0.98042 0.98367 0.96345 1.70043 1.44650 1.28380 1.15736 0.85884 0.78421 0.79815 0.79903 1.20511 1.21447 1.14755 1.21473 0.99091 0.83381 0.97034 1.19859 1.02083 0.85162 1.00901 1.29235 0.92013 0.94410 0.91754 1.81264 1.11545 1.14026 1.10056 1.21454 0.90136 0.91919 0.96150 1.22102 1.06263 1.00157 0.98722 1.17486 0.82243 0.85626 0.83668 1.90844 1.40859 1.27824 1.86452 0.91966 0.92506 0.88644 0.85676 0.92271 0.88744 0.92019 0.80173 0.91868 0.95134 0.92650 0.89281 0.88980 0.84786 0.84888 0.82047 0.81762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.11 71.98 0.66 -2.27 16 2 C 0.11 1.88 3.20 44.99 0.14 2.02 16 3 C -0.16 -2.83 9.11 71.98 0.66 -2.17 16 4 N -0.48 -9.99 2.51 -627.07 -1.57 -11.56 16 5 C 0.18 3.78 8.92 84.21 0.75 4.53 16 6 C -0.24 -5.53 4.19 -20.08 -0.08 -5.62 16 7 C 0.58 18.22 7.07 86.67 0.61 18.84 16 8 O -0.57 -24.03 16.66 -4.04 -0.07 -24.09 16 9 N -0.58 -17.55 2.46 -829.99 -2.04 -19.59 16 10 C 0.22 8.48 4.29 85.63 0.37 8.85 16 11 C -0.53 -26.77 9.94 25.60 0.25 -26.52 16 12 H 0.04 2.16 8.06 -2.91 -0.02 2.14 16 13 C 0.01 0.68 5.47 84.65 0.46 1.14 16 14 N -0.95 -55.58 13.96 21.45 0.30 -55.28 16 15 Si 0.94 39.66 27.47 68.60 1.88 41.54 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 17 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.23 -8.03 6.54 99.48 0.65 -7.38 16 19 C 0.11 2.45 5.32 86.38 0.46 2.90 16 20 C -0.04 -0.59 6.03 28.79 0.17 -0.42 16 21 C 0.24 4.96 15.43 89.44 1.38 6.34 16 22 N -0.49 -13.25 18.54 20.00 0.37 -12.88 16 23 C 0.03 0.48 9.86 22.57 0.22 0.70 16 24 C -0.25 -5.15 9.97 22.36 0.22 -4.93 16 25 C 0.51 12.46 6.81 84.90 0.58 13.04 16 26 O -0.57 -17.13 13.13 -5.19 -0.07 -17.20 16 27 H 0.06 1.43 6.10 -2.39 -0.01 1.41 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.13 1.57 7.70 -2.39 -0.02 1.55 16 31 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.40 6.10 -2.39 -0.01 1.38 16 34 H 0.18 3.40 7.80 -2.91 -0.02 3.37 16 35 H 0.06 2.13 7.13 -2.39 -0.02 2.11 16 36 H 0.03 1.29 6.78 -2.39 -0.02 1.27 16 37 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 38 H 0.09 2.07 8.11 -2.39 -0.02 2.06 16 39 H 0.09 1.70 5.76 -2.39 -0.01 1.69 16 40 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 43 H 0.16 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -76.02 367.00 6.64 -69.38 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.97 Total: 13.23 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 6.86 Total: 16.45 kcal Atomic # 7 Polarization: -96.36 SS G_CDS: -2.94 Total: -99.30 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -0.14 Total: -41.30 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.88 Total: 41.54 kcal Total: -76.02 6.64 -69.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199511178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.090 kcal (2) G-P(sol) polarization free energy of solvation -76.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds