Wall clock time and date at job start Tue Mar 31 2020 12:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46696 * 2 1 4 4 O 1.42899 * 109.47069 * 180.02562 * 3 2 1 5 5 C 1.35834 * 116.99729 * 179.97438 * 4 3 2 6 6 C 1.38865 * 119.93392 * 180.02562 * 5 4 3 7 7 C 1.37869 * 120.06558 * 179.97438 * 6 5 4 8 8 C 1.39405 * 119.93588 * 359.97438 * 7 6 5 9 9 C 1.48339 * 120.06336 * 179.97438 * 8 7 6 10 10 N 1.30808 * 126.42040 * 359.95549 * 9 8 7 11 11 O 1.21284 * 110.08661 * 180.02562 * 10 9 8 12 12 C 1.33664 * 110.04018 * 0.02562 * 11 10 9 13 13 C 1.50704 * 126.43616 * 179.97438 * 12 11 10 14 14 N 1.46903 * 109.46989 * 269.99548 * 13 12 11 15 15 C 1.46891 * 111.00039 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47210 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99915 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00409 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99815 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47601 * 89.99743 * 20 18 16 22 22 H 1.48505 * 109.47078 * 209.99989 * 20 18 16 23 23 H 1.48501 * 109.47423 * 329.99723 * 20 18 16 24 24 N 1.30974 * 107.13324 * 359.97438 * 12 11 10 25 25 C 1.39400 * 119.87081 * 0.25523 * 8 7 6 26 26 C 1.37875 * 119.93359 * 359.48823 * 25 8 7 27 27 H 1.09008 * 109.46468 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47210 * 299.99515 * 1 2 3 29 29 H 1.09000 * 109.47573 * 60.00559 * 1 2 3 30 30 H 1.08995 * 109.47210 * 240.00484 * 2 1 3 31 31 H 1.08993 * 109.47297 * 120.00046 * 2 1 3 32 32 H 1.09002 * 109.47526 * 60.00089 * 3 2 1 33 33 H 1.09007 * 109.47286 * 300.00210 * 3 2 1 34 34 H 1.08007 * 119.96894 * 359.94890 * 6 5 4 35 35 H 1.08003 * 120.03272 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.46731 * 29.99328 * 13 12 11 37 37 H 1.08998 * 109.47065 * 149.99721 * 13 12 11 38 38 H 1.00897 * 110.99819 * 56.04658 * 14 13 12 39 39 H 1.09006 * 109.47275 * 299.99726 * 15 14 13 40 40 H 1.09004 * 109.47467 * 60.00064 * 15 14 13 41 41 H 0.96996 * 120.00112 * 179.97438 * 19 18 16 42 42 H 1.07991 * 120.03324 * 179.75069 * 25 8 7 43 43 H 1.08000 * 119.96665 * 180.23335 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0854 2.6530 -0.0012 6 6 5.4723 2.7242 -0.0024 7 6 6.1009 3.9513 -0.0035 8 6 5.3429 5.1212 -0.0041 9 6 6.0163 6.4429 -0.0048 10 7 7.3067 6.6571 -0.0041 11 8 7.5311 7.8490 -0.0045 12 6 6.3819 8.5315 -0.0049 13 6 6.2313 10.0310 -0.0048 14 7 6.1818 10.5181 1.3802 15 6 6.0345 11.9791 1.4194 16 6 5.9881 12.4410 2.8532 17 1 6.0604 11.7211 3.6550 18 6 5.8534 13.7826 3.1412 19 7 5.7659 14.6593 2.1648 20 14 5.7967 14.3552 4.9183 21 1 7.1747 14.6468 5.3888 22 1 4.9696 15.5847 5.0161 23 1 5.2005 13.2892 5.7631 24 7 5.4110 7.6523 -0.0053 25 6 3.9509 5.0466 0.0019 26 6 3.3278 3.8167 -0.0023 27 1 -0.3632 -1.0278 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 6.0591 1.8175 -0.0019 35 1 7.1795 4.0060 -0.0048 36 1 7.0808 10.4813 -0.5182 37 1 5.3098 10.3036 -0.5191 38 1 6.9965 10.2225 1.8968 39 1 6.8824 12.4435 0.9158 40 1 5.1113 12.2649 0.9152 41 1 5.6708 15.6031 2.3675 42 1 3.3611 5.9513 0.0055 43 1 2.2494 3.7583 -0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211454900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:17 Heat of formation + Delta-G solvation = 46.470221 kcal Electronic energy + Delta-G solvation = -24335.493641 eV Core-core repulsion = 20577.048677 eV Total energy + Delta-G solvation = -3758.444963 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.34782 -40.48781 -38.12056 -36.09701 -35.38561 -34.35249 -33.03701 -31.97000 -31.38333 -29.99465 -27.90463 -27.12007 -25.10608 -24.41554 -23.40552 -22.51035 -21.80373 -21.61026 -20.73197 -18.58724 -17.90964 -17.65245 -16.72794 -16.62921 -16.34773 -15.89965 -15.24361 -14.65419 -14.62806 -14.60243 -14.41073 -13.97059 -13.67495 -13.48872 -13.13381 -13.01883 -12.92194 -12.64286 -12.39989 -12.14340 -12.09942 -11.69573 -11.62095 -11.48274 -11.40720 -11.17070 -11.02388 -10.84335 -10.79185 -10.75881 -10.19951 -9.89894 -9.33929 -9.31816 -8.56934 -8.31984 -7.60498 -6.11040 -4.13441 0.62691 1.06330 1.44823 2.49305 2.73645 2.96949 3.29093 3.35474 3.40307 3.55628 3.59324 4.04783 4.33912 4.37094 4.38345 4.52765 4.62581 4.69691 4.85487 4.91941 4.98646 5.04101 5.13427 5.16974 5.24689 5.26210 5.32897 5.45610 5.52536 5.54669 5.63048 5.68056 5.75805 5.84194 5.93707 6.01096 6.19981 6.27935 6.36707 6.99041 7.02523 7.22142 7.62823 7.97311 8.11276 8.28395 8.38276 8.94101 9.51768 10.99905 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.001960 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.424441 B =14280.427563 C =15267.609926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.055 3.945 4 O -0.314 6.314 5 C 0.146 3.854 6 C -0.156 4.156 7 C -0.044 4.044 8 C -0.055 4.055 9 C 0.211 3.789 10 N -0.386 5.386 11 O 0.074 5.926 12 C 0.208 3.792 13 C 0.147 3.853 14 N -0.681 5.681 15 C 0.195 3.805 16 C -0.518 4.518 17 H 0.064 0.936 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.901 3.099 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 N -0.467 5.467 25 C -0.031 4.031 26 C -0.212 4.212 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.336 0.664 39 H -0.005 1.005 40 H 0.035 0.965 41 H 0.263 0.737 42 H 0.141 0.859 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.825 -26.727 -7.684 28.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.020 4.020 4 O -0.227 6.227 5 C 0.099 3.901 6 C -0.174 4.174 7 C -0.064 4.064 8 C -0.057 4.057 9 C -0.059 4.059 10 N -0.094 5.094 11 O 0.016 5.984 12 C -0.013 4.013 13 C 0.016 3.984 14 N -0.314 5.314 15 C 0.070 3.930 16 C -0.556 4.556 17 H 0.082 0.918 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.729 3.271 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 N -0.201 5.201 25 C -0.051 4.051 26 C -0.231 4.231 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.080 0.920 37 H 0.131 0.869 38 H 0.153 0.847 39 H 0.013 0.987 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.159 0.841 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.271 -27.581 -7.662 29.304 hybrid contribution 0.686 1.095 0.695 1.468 sum -5.584 -26.485 -6.967 27.950 Atomic orbital electron populations 1.21700 0.94110 1.02626 1.02382 1.21487 0.96153 0.94695 1.03759 1.22955 0.78153 0.99045 1.01828 1.86037 1.21603 1.26959 1.88147 1.19156 0.92290 0.84141 0.94477 1.20296 0.91276 0.98354 1.07492 1.20977 1.00307 0.90189 0.94929 1.17249 0.92722 0.87107 1.08611 1.23833 0.86567 0.94114 1.01360 1.74831 1.17672 0.94935 1.21992 1.85259 1.35103 1.12328 1.65731 1.29065 0.79166 0.99389 0.93669 1.20518 1.03702 0.78847 0.95372 1.60766 1.45854 1.17339 1.07433 1.19649 0.96613 0.78693 0.98067 1.21114 1.50498 0.92188 0.91844 0.91792 1.24965 0.95123 0.96596 0.97708 1.69946 1.49979 1.02089 1.31479 0.86446 0.77982 0.78191 0.84496 1.20647 1.21170 1.19744 1.72014 1.30150 0.97738 1.20162 1.21052 0.92936 0.98006 0.93143 1.21191 1.00377 0.91757 1.09765 0.91666 0.92235 0.92269 0.90801 0.90767 0.91671 0.91731 0.84501 0.84453 0.91959 0.86884 0.84720 0.98714 0.94658 0.92755 0.84092 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.91 37.16 0.37 -0.22 16 2 C -0.12 -0.64 6.30 -26.73 -0.17 -0.81 16 3 C 0.06 0.37 4.74 37.16 0.18 0.54 16 4 O -0.31 -2.97 10.13 -19.22 -0.19 -3.17 16 5 C 0.15 1.51 6.69 -39.12 -0.26 1.25 16 6 C -0.16 -1.60 9.97 -39.48 -0.39 -2.00 16 7 C -0.04 -0.51 9.69 -39.28 -0.38 -0.89 16 8 C -0.05 -0.75 5.88 -104.87 -0.62 -1.36 16 9 C 0.21 3.38 7.80 -156.10 -1.22 2.16 16 10 N -0.39 -6.28 11.85 30.97 0.37 -5.91 16 11 O 0.07 1.20 11.29 18.05 0.20 1.40 16 12 C 0.21 3.39 8.01 -12.98 -0.10 3.29 16 13 C 0.15 2.38 6.31 -4.97 -0.03 2.35 16 14 N -0.68 -13.77 6.48 -116.34 -0.75 -14.53 16 15 C 0.20 4.79 5.44 -4.98 -0.03 4.76 16 16 C -0.52 -14.17 9.32 -34.44 -0.32 -14.49 16 17 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -25.82 13.29 55.43 0.74 -25.09 16 20 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 N -0.47 -7.94 11.25 -9.88 -0.11 -8.06 16 25 C -0.03 -0.38 9.69 -39.28 -0.38 -0.76 16 26 C -0.21 -2.15 9.02 -39.48 -0.36 -2.50 16 27 H 0.06 0.22 8.14 -51.92 -0.42 -0.21 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.39 7.66 -51.93 -0.40 0.00 16 33 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 34 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.14 1.50 7.86 -52.48 -0.41 1.08 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.34 6.54 8.71 -39.29 -0.34 6.20 16 39 H 0.00 -0.12 8.14 -51.93 -0.42 -0.55 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.14 1.70 7.87 -52.49 -0.41 1.29 16 43 H 0.13 1.04 6.28 -52.49 -0.33 0.71 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -30.78 372.87 -9.03 -39.81 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -6.07 Total: 0.86 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.81 Total: -7.18 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.24 Total: -53.58 kcal Atomic # 8 Polarization: -1.78 SS G_CDS: 0.01 Total: -1.77 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.78 -9.03 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.280 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds