Wall clock time and date at job start Tue Mar 31 2020 12:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46696 * 2 1 4 4 O 1.42899 * 109.47069 * 180.02562 * 3 2 1 5 5 C 1.35834 * 116.99729 * 179.97438 * 4 3 2 6 6 C 1.38865 * 119.93392 * 180.02562 * 5 4 3 7 7 C 1.37869 * 120.06558 * 179.97438 * 6 5 4 8 8 C 1.39405 * 119.93588 * 359.97438 * 7 6 5 9 9 C 1.48339 * 120.06336 * 179.97438 * 8 7 6 10 10 N 1.30808 * 126.42040 * 359.95549 * 9 8 7 11 11 O 1.21284 * 110.08661 * 180.02562 * 10 9 8 12 12 C 1.33664 * 110.04018 * 0.02562 * 11 10 9 13 13 C 1.50704 * 126.43616 * 179.97438 * 12 11 10 14 14 N 1.46903 * 109.46989 * 269.99548 * 13 12 11 15 15 C 1.46891 * 111.00039 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47210 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99915 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00409 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99815 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47601 * 89.99743 * 20 18 16 22 22 H 1.48505 * 109.47078 * 209.99989 * 20 18 16 23 23 H 1.48501 * 109.47423 * 329.99723 * 20 18 16 24 24 N 1.30974 * 107.13324 * 359.97438 * 12 11 10 25 25 C 1.39400 * 119.87081 * 0.25523 * 8 7 6 26 26 C 1.37875 * 119.93359 * 359.48823 * 25 8 7 27 27 H 1.09008 * 109.46468 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47210 * 299.99515 * 1 2 3 29 29 H 1.09000 * 109.47573 * 60.00559 * 1 2 3 30 30 H 1.08995 * 109.47210 * 240.00484 * 2 1 3 31 31 H 1.08993 * 109.47297 * 120.00046 * 2 1 3 32 32 H 1.09002 * 109.47526 * 60.00089 * 3 2 1 33 33 H 1.09007 * 109.47286 * 300.00210 * 3 2 1 34 34 H 1.08007 * 119.96894 * 359.94890 * 6 5 4 35 35 H 1.08003 * 120.03272 * 180.02562 * 7 6 5 36 36 H 1.08995 * 109.46731 * 29.99328 * 13 12 11 37 37 H 1.08998 * 109.47065 * 149.99721 * 13 12 11 38 38 H 1.00897 * 110.99819 * 56.04658 * 14 13 12 39 39 H 1.09006 * 109.47275 * 299.99726 * 15 14 13 40 40 H 1.09004 * 109.47467 * 60.00064 * 15 14 13 41 41 H 0.96996 * 120.00112 * 179.97438 * 19 18 16 42 42 H 1.07991 * 120.03324 * 179.75069 * 25 8 7 43 43 H 1.08000 * 119.96665 * 180.23335 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0854 2.6530 -0.0012 6 6 5.4723 2.7242 -0.0024 7 6 6.1009 3.9513 -0.0035 8 6 5.3429 5.1212 -0.0041 9 6 6.0163 6.4429 -0.0048 10 7 7.3067 6.6571 -0.0041 11 8 7.5311 7.8490 -0.0045 12 6 6.3819 8.5315 -0.0049 13 6 6.2313 10.0310 -0.0048 14 7 6.1818 10.5181 1.3802 15 6 6.0345 11.9791 1.4194 16 6 5.9881 12.4410 2.8532 17 1 6.0604 11.7211 3.6550 18 6 5.8534 13.7826 3.1412 19 7 5.7659 14.6593 2.1648 20 14 5.7967 14.3552 4.9183 21 1 7.1747 14.6468 5.3888 22 1 4.9696 15.5847 5.0161 23 1 5.2005 13.2892 5.7631 24 7 5.4110 7.6523 -0.0053 25 6 3.9509 5.0466 0.0019 26 6 3.3278 3.8167 -0.0023 27 1 -0.3632 -1.0278 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9564 0.8900 33 1 1.6765 1.9564 -0.8900 34 1 6.0591 1.8175 -0.0019 35 1 7.1795 4.0060 -0.0048 36 1 7.0808 10.4813 -0.5182 37 1 5.3098 10.3036 -0.5191 38 1 6.9965 10.2225 1.8968 39 1 6.8824 12.4435 0.9158 40 1 5.1113 12.2649 0.9152 41 1 5.6708 15.6031 2.3675 42 1 3.3611 5.9513 0.0055 43 1 2.2494 3.7583 -0.0015 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211454900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:17 Heat of formation + Delta-G solvation = 26.545751 kcal Electronic energy + Delta-G solvation = -24336.357630 eV Core-core repulsion = 20577.048677 eV Total energy + Delta-G solvation = -3759.308953 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.60482 -41.26290 -38.93722 -37.63455 -36.65457 -34.97499 -34.71603 -33.47516 -32.24089 -30.95933 -29.62262 -27.65153 -26.80658 -25.53157 -24.28075 -23.65153 -23.41673 -22.41601 -21.69992 -19.39412 -19.18625 -18.97440 -18.37715 -17.29233 -17.28775 -17.02566 -16.78129 -16.41269 -15.53002 -15.46244 -15.19336 -15.14444 -14.92433 -14.53615 -14.35589 -14.04435 -13.98202 -13.59356 -13.37525 -13.31713 -13.08301 -12.94809 -12.88777 -12.69937 -12.62244 -12.33702 -12.25929 -12.10771 -12.04285 -11.73682 -11.60821 -11.37466 -11.15448 -10.64652 -10.18351 -9.29692 -9.20927 -8.21451 -6.31115 -0.40315 0.21347 0.24388 1.34522 1.44067 1.44932 1.56268 1.68005 2.07461 2.40758 2.44851 2.66929 2.86636 3.13140 3.56727 3.67992 3.75016 3.84945 3.95095 4.01262 4.09844 4.25915 4.27880 4.30735 4.36832 4.48519 4.55227 4.57595 4.63588 4.78808 4.80116 4.92253 5.05887 5.08833 5.13637 5.18680 5.21378 5.25715 5.34861 5.36488 5.54100 5.59217 5.97897 6.29743 6.30207 6.54506 6.85175 7.03053 7.38833 8.89558 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.001960 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.424441 B =14280.427563 C =15267.609926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.046 3.954 4 O -0.321 6.321 5 C 0.149 3.851 6 C -0.155 4.155 7 C -0.044 4.044 8 C -0.085 4.085 9 C 0.211 3.789 10 N -0.396 5.396 11 O 0.073 5.927 12 C 0.210 3.790 13 C 0.152 3.848 14 N -0.686 5.686 15 C 0.210 3.790 16 C -0.538 4.538 17 H 0.061 0.939 18 C 0.007 3.993 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.269 1.269 24 N -0.483 5.483 25 C -0.037 4.037 26 C -0.207 4.207 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.157 0.843 35 H 0.141 0.859 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.340 0.660 39 H -0.018 1.018 40 H 0.015 0.985 41 H 0.266 0.734 42 H 0.136 0.864 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.520 -28.279 -7.223 29.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.028 4.028 4 O -0.234 6.234 5 C 0.102 3.898 6 C -0.174 4.174 7 C -0.064 4.064 8 C -0.087 4.087 9 C -0.058 4.058 10 N -0.106 5.106 11 O 0.016 5.984 12 C -0.012 4.012 13 C 0.022 3.978 14 N -0.319 5.319 15 C 0.083 3.917 16 C -0.577 4.577 17 H 0.079 0.921 18 C -0.192 4.192 19 N -0.568 5.568 20 Si 0.793 3.207 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.194 1.194 24 N -0.217 5.217 25 C -0.057 4.057 26 C -0.226 4.226 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.175 0.825 35 H 0.159 0.841 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.158 0.842 39 H 0.000 1.000 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.154 0.846 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.958 -29.152 -7.208 30.825 hybrid contribution 0.837 1.409 0.500 1.713 sum -6.121 -27.743 -6.708 29.192 Atomic orbital electron populations 1.21697 0.93046 1.03196 1.02683 1.21493 0.96962 0.93749 1.03621 1.23236 0.76643 1.00249 1.02697 1.86047 1.23260 1.26389 1.87723 1.19293 0.92495 0.84600 0.93408 1.20514 0.91686 0.98512 1.06649 1.21035 1.00473 0.90123 0.94779 1.17441 0.93517 0.86593 1.11166 1.24279 0.86481 0.94754 1.00305 1.74812 1.17950 0.94865 1.22940 1.85242 1.34916 1.12389 1.65859 1.28920 0.79311 0.99185 0.93762 1.20498 1.05086 0.78903 0.93344 1.60549 1.46451 1.14788 1.10141 1.19282 0.94976 0.81021 0.96408 1.21489 1.50473 0.92587 0.93127 0.92068 1.25818 0.94649 0.96756 1.01939 1.70050 1.50730 1.02442 1.33545 0.85403 0.78287 0.77653 0.79367 1.19750 1.20709 1.19376 1.72013 1.30661 0.98384 1.20657 1.21084 0.92423 0.98714 0.93518 1.21390 1.01609 0.90862 1.08701 0.91012 0.92016 0.91889 0.90883 0.91010 0.90896 0.90713 0.82521 0.84146 0.89572 0.86343 0.84232 1.00002 0.96670 0.92536 0.84564 0.82368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 71.98 0.71 -0.15 16 2 C -0.12 -1.03 6.30 30.59 0.19 -0.83 16 3 C 0.05 0.51 4.74 71.98 0.34 0.85 16 4 O -0.32 -5.39 10.13 -91.68 -0.93 -6.32 16 5 C 0.15 2.81 6.69 22.57 0.15 2.96 16 6 C -0.16 -2.95 9.97 22.33 0.22 -2.73 16 7 C -0.04 -1.00 9.69 22.46 0.22 -0.78 16 8 C -0.08 -2.28 5.88 -20.03 -0.12 -2.40 16 9 C 0.21 6.76 7.80 137.25 1.07 7.83 16 10 N -0.40 -12.85 11.85 -59.08 -0.70 -13.55 16 11 O 0.07 2.33 11.29 74.66 0.84 3.17 16 12 C 0.21 6.78 8.01 88.36 0.71 7.49 16 13 C 0.15 4.88 6.31 85.56 0.54 5.42 16 14 N -0.69 -27.77 6.48 -521.99 -3.38 -31.15 16 15 C 0.21 10.42 5.44 85.56 0.47 10.89 16 16 C -0.54 -29.60 9.32 25.60 0.24 -29.36 16 17 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 18 C 0.01 0.41 5.46 84.66 0.46 0.87 16 19 N -0.93 -53.76 13.29 21.45 0.28 -53.47 16 20 Si 0.97 43.38 29.54 68.60 2.03 45.40 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 N -0.48 -16.43 11.25 -302.47 -3.40 -19.84 16 25 C -0.04 -0.88 9.69 22.46 0.22 -0.66 16 26 C -0.21 -3.84 9.02 22.33 0.20 -3.64 16 27 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 28 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.70 7.66 -2.39 -0.02 0.69 16 33 H 0.07 0.68 7.65 -2.38 -0.02 0.67 16 34 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.14 2.99 7.86 -2.91 -0.02 2.97 16 36 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 38 H 0.34 13.23 8.71 -89.70 -0.78 12.45 16 39 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.14 3.27 7.87 -2.92 -0.02 3.24 16 43 H 0.16 2.07 6.28 -2.91 -0.02 2.05 16 Total: -1.00 -64.96 372.87 0.61 -64.35 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.25 Total: 15.67 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 5.62 Total: -4.25 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -7.20 Total: -118.02 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: -0.09 Total: -3.15 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -64.96 0.61 -64.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211454900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.899 kcal (2) G-P(sol) polarization free energy of solvation -64.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds