Wall clock time and date at job start Tue Mar 31 2020 12:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46981 * 2 1 4 4 O 1.42900 * 109.47151 * 119.99482 * 2 1 3 5 5 C 1.35907 * 116.99496 * 84.81916 * 4 2 1 6 6 C 1.38829 * 119.99408 * 174.64608 * 5 4 2 7 7 C 1.38211 * 120.18406 * 179.70264 * 6 5 4 8 8 C 1.38081 * 120.17736 * 0.55471 * 7 6 5 9 9 C 1.39318 * 119.99079 * 359.44299 * 8 7 6 10 10 C 1.48430 * 120.09348 * 180.29764 * 9 8 7 11 11 N 1.30764 * 126.41369 * 180.02562 * 10 9 8 12 12 O 1.21287 * 110.09617 * 180.02562 * 11 10 9 13 13 C 1.33672 * 110.02817 * 359.97438 * 12 11 10 14 14 C 1.50696 * 126.43731 * 180.02562 * 13 12 11 15 15 N 1.46896 * 109.47053 * 269.97242 * 14 13 12 16 16 C 1.46907 * 111.00184 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47050 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99954 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99738 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99876 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00052 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47255 * 59.99964 * 21 19 17 23 23 H 1.48496 * 109.47298 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47022 * 300.00221 * 21 19 17 25 25 N 1.30983 * 107.12019 * 359.73002 * 13 12 11 26 26 C 1.38513 * 119.99641 * 354.62196 * 5 4 2 27 27 H 1.09009 * 109.47102 * 59.99975 * 1 2 3 28 28 H 1.09006 * 109.47260 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47462 * 299.99975 * 1 2 3 30 30 H 1.08995 * 109.47442 * 240.00471 * 2 1 3 31 31 H 1.08999 * 109.47424 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47449 * 300.00066 * 3 2 1 33 33 H 1.09001 * 109.47002 * 59.99744 * 3 2 1 34 34 H 1.07992 * 119.90935 * 359.97438 * 6 5 4 35 35 H 1.07993 * 119.91330 * 180.27850 * 7 6 5 36 36 H 1.07994 * 119.99878 * 179.72022 * 8 7 6 37 37 H 1.08996 * 109.47697 * 29.97619 * 14 13 12 38 38 H 1.09000 * 109.47144 * 149.97248 * 14 13 12 39 39 H 1.00901 * 111.00122 * 56.04692 * 15 14 13 40 40 H 1.08991 * 109.47007 * 300.00077 * 16 15 14 41 41 H 1.09001 * 109.47064 * 60.00175 * 16 15 14 42 42 H 0.97009 * 119.99516 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.09077 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.1088 -2.0270 1.0992 6 6 2.6684 -2.7343 2.1547 7 6 2.7690 -4.1113 2.0927 8 6 2.3239 -4.7902 0.9757 9 6 1.7611 -4.0878 -0.0878 10 6 1.2759 -4.8159 -1.2868 11 7 0.7306 -4.2843 -2.3499 12 8 0.4441 -5.1507 -3.1488 13 6 0.7856 -6.3496 -2.6661 14 6 0.5970 -7.6777 -3.3527 15 7 -0.7153 -8.2321 -2.9945 16 6 -0.9342 -9.5302 -3.6467 17 6 -2.2872 -10.0668 -3.2559 18 1 -2.9211 -9.5001 -2.5900 19 6 -2.7160 -11.2807 -3.7492 20 7 -1.9442 -11.9705 -4.5604 21 14 -4.3933 -11.9456 -3.2654 22 1 -5.4468 -10.9913 -3.6951 23 1 -4.6146 -13.2577 -3.9246 24 1 -4.4516 -12.1165 -1.7915 25 7 1.3208 -6.1524 -1.4870 26 6 1.6546 -2.7007 -0.0226 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.0220 -2.2074 3.0285 35 1 3.2009 -4.6575 2.9182 36 1 2.4081 -5.8658 0.9284 37 1 0.6505 -7.5394 -4.4326 38 1 1.3809 -8.3654 -3.0353 39 1 -1.4553 -7.5844 -3.2201 40 1 -0.8912 -9.4050 -4.7285 41 1 -0.1610 -10.2305 -3.3309 42 1 -2.2459 -12.8248 -4.9072 43 1 1.2191 -2.1519 -0.8445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211455122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:21 Heat of formation + Delta-G solvation = 52.033944 kcal Electronic energy + Delta-G solvation = -25003.030926 eV Core-core repulsion = 21244.827223 eV Total energy + Delta-G solvation = -3758.203702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.43564 -40.58875 -38.13719 -36.14269 -35.48838 -33.65065 -33.08825 -32.13474 -30.76639 -30.00660 -27.93827 -27.66403 -25.12343 -24.92776 -23.70521 -22.58316 -21.70800 -21.26819 -20.82021 -18.68425 -17.98464 -17.20538 -16.60573 -16.40127 -16.08749 -15.76964 -15.25783 -15.17111 -14.62762 -14.42083 -14.17999 -13.75874 -13.70558 -13.43821 -13.19791 -12.93870 -12.72196 -12.71112 -12.40894 -12.24701 -11.92264 -11.74020 -11.65105 -11.58178 -11.42772 -11.13904 -11.02810 -10.91407 -10.82217 -10.77756 -10.29515 -9.97193 -9.35050 -9.03070 -8.57079 -8.42335 -7.62803 -6.11684 -4.14251 0.53274 1.14643 1.39940 2.46098 2.82678 2.90214 3.30590 3.34590 3.37880 3.44918 3.59065 3.99390 4.35394 4.37581 4.48636 4.57534 4.67811 4.70959 4.98826 5.01892 5.11193 5.13896 5.18102 5.22896 5.25264 5.32218 5.35421 5.42928 5.52222 5.55426 5.64883 5.67464 5.78475 5.84678 5.97381 6.06056 6.19124 6.29111 6.44178 6.97283 7.10739 7.20524 7.61177 7.96337 8.09208 8.20525 8.36701 8.92859 9.50903 10.99187 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.002179 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.918964 B =12848.805134 C =13109.246031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.075 3.925 3 C -0.147 4.147 4 O -0.309 6.309 5 C 0.128 3.872 6 C -0.137 4.137 7 C -0.083 4.083 8 C -0.112 4.112 9 C 0.024 3.976 10 C 0.203 3.797 11 N -0.382 5.382 12 O 0.077 5.923 13 C 0.209 3.791 14 C 0.147 3.853 15 N -0.681 5.681 16 C 0.196 3.804 17 C -0.518 4.518 18 H 0.063 0.937 19 C 0.058 3.942 20 N -0.896 5.896 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.275 1.275 25 N -0.462 5.462 26 C -0.178 4.178 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.063 0.937 38 H 0.114 0.886 39 H 0.336 0.664 40 H -0.005 1.005 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.501 23.100 8.948 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.019 3.981 3 C -0.204 4.204 4 O -0.223 6.223 5 C 0.082 3.918 6 C -0.157 4.157 7 C -0.101 4.101 8 C -0.132 4.132 9 C 0.022 3.978 10 C -0.067 4.067 11 N -0.089 5.089 12 O 0.017 5.983 13 C -0.012 4.012 14 C 0.015 3.985 15 N -0.314 5.314 16 C 0.071 3.929 17 C -0.557 4.557 18 H 0.081 0.919 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.201 1.201 25 N -0.195 5.195 26 C -0.199 4.199 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.158 0.842 37 H 0.081 0.919 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.013 0.987 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.839 23.501 9.825 27.683 hybrid contribution -1.273 -0.380 -1.082 1.713 sum 9.566 23.122 8.742 26.506 Atomic orbital electron populations 1.22395 0.94823 1.03407 1.03266 1.22480 0.94581 0.93749 0.87338 1.21848 1.02089 0.93344 1.03159 1.86123 1.81268 1.15967 1.38962 1.18763 0.96022 0.82821 0.94146 1.20593 1.02766 0.93892 0.98432 1.20941 0.98311 0.93044 0.97776 1.21204 0.98476 1.01140 0.92345 1.17091 0.99330 0.91227 0.90106 1.23891 0.99902 0.87601 0.95285 1.74818 1.18268 1.13684 1.02174 1.85269 1.60180 1.13950 1.38895 1.29116 0.91696 0.90901 0.89482 1.20533 0.97839 0.83987 0.96105 1.60778 0.99853 1.07241 1.63523 1.19643 0.97991 0.83528 0.91785 1.21063 1.01198 1.04619 1.28810 0.91857 1.24967 0.97815 0.96670 0.94953 1.69941 1.36991 1.14257 1.32301 0.86495 0.83719 0.77992 0.78830 1.20207 1.21276 1.20084 1.72028 1.20618 1.12805 1.14043 1.21257 1.05500 0.93797 0.99332 0.90806 0.91712 0.91311 0.90793 0.91622 0.90399 0.91398 0.84804 0.84422 0.84208 0.91915 0.86785 0.84734 0.98721 0.94647 0.92685 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.17 37.15 0.34 -1.09 16 2 C 0.07 0.62 2.85 -26.73 -0.08 0.54 16 3 C -0.15 -0.90 9.56 37.16 0.36 -0.54 16 4 O -0.31 -3.21 9.80 -19.45 -0.19 -3.40 16 5 C 0.13 1.42 6.59 -39.26 -0.26 1.16 16 6 C -0.14 -1.34 9.98 -39.37 -0.39 -1.74 16 7 C -0.08 -0.79 10.03 -39.65 -0.40 -1.19 16 8 C -0.11 -1.35 9.70 -39.24 -0.38 -1.73 16 9 C 0.02 0.34 5.87 -104.91 -0.62 -0.28 16 10 C 0.20 3.25 7.80 -156.12 -1.22 2.03 16 11 N -0.38 -6.14 11.86 30.97 0.37 -5.78 16 12 O 0.08 1.22 11.29 18.03 0.20 1.42 16 13 C 0.21 3.37 8.01 -12.99 -0.10 3.26 16 14 C 0.15 2.35 6.31 -4.98 -0.03 2.32 16 15 N -0.68 -13.67 6.48 -116.34 -0.75 -14.43 16 16 C 0.20 4.78 5.44 -4.97 -0.03 4.75 16 17 C -0.52 -14.12 9.32 -34.44 -0.32 -14.44 16 18 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 21 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 N -0.46 -7.81 11.26 -9.88 -0.11 -7.92 16 26 C -0.18 -2.19 7.88 -39.10 -0.31 -2.50 16 27 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.06 0.61 6.90 -51.93 -0.36 0.25 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.63 6.31 -51.93 -0.33 0.30 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.14 1.70 7.87 -52.49 -0.41 1.28 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 39 H 0.34 6.48 8.72 -39.29 -0.34 6.14 16 40 H 0.00 -0.13 8.14 -51.93 -0.42 -0.55 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.14 1.64 5.23 -52.49 -0.27 1.36 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -30.57 369.33 -8.65 -39.22 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.91 Total: 2.09 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.53 Total: -7.94 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.24 Total: -53.15 kcal Atomic # 8 Polarization: -1.99 SS G_CDS: 0.01 Total: -1.98 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.57 -8.65 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211455122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.250 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds