Wall clock time and date at job start Tue Mar 31 2020 12:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46981 * 2 1 4 4 O 1.42900 * 109.47151 * 119.99482 * 2 1 3 5 5 C 1.35907 * 116.99496 * 84.81916 * 4 2 1 6 6 C 1.38829 * 119.99408 * 174.64608 * 5 4 2 7 7 C 1.38211 * 120.18406 * 179.70264 * 6 5 4 8 8 C 1.38081 * 120.17736 * 0.55471 * 7 6 5 9 9 C 1.39318 * 119.99079 * 359.44299 * 8 7 6 10 10 C 1.48430 * 120.09348 * 180.29764 * 9 8 7 11 11 N 1.30764 * 126.41369 * 180.02562 * 10 9 8 12 12 O 1.21287 * 110.09617 * 180.02562 * 11 10 9 13 13 C 1.33672 * 110.02817 * 359.97438 * 12 11 10 14 14 C 1.50696 * 126.43731 * 180.02562 * 13 12 11 15 15 N 1.46896 * 109.47053 * 269.97242 * 14 13 12 16 16 C 1.46907 * 111.00184 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47050 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99954 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99738 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99876 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00052 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47255 * 59.99964 * 21 19 17 23 23 H 1.48496 * 109.47298 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47022 * 300.00221 * 21 19 17 25 25 N 1.30983 * 107.12019 * 359.73002 * 13 12 11 26 26 C 1.38513 * 119.99641 * 354.62196 * 5 4 2 27 27 H 1.09009 * 109.47102 * 59.99975 * 1 2 3 28 28 H 1.09006 * 109.47260 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47462 * 299.99975 * 1 2 3 30 30 H 1.08995 * 109.47442 * 240.00471 * 2 1 3 31 31 H 1.08999 * 109.47424 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47449 * 300.00066 * 3 2 1 33 33 H 1.09001 * 109.47002 * 59.99744 * 3 2 1 34 34 H 1.07992 * 119.90935 * 359.97438 * 6 5 4 35 35 H 1.07993 * 119.91330 * 180.27850 * 7 6 5 36 36 H 1.07994 * 119.99878 * 179.72022 * 8 7 6 37 37 H 1.08996 * 109.47697 * 29.97619 * 14 13 12 38 38 H 1.09000 * 109.47144 * 149.97248 * 14 13 12 39 39 H 1.00901 * 111.00122 * 56.04692 * 15 14 13 40 40 H 1.08991 * 109.47007 * 300.00077 * 16 15 14 41 41 H 1.09001 * 109.47064 * 60.00175 * 16 15 14 42 42 H 0.97009 * 119.99516 * 179.97438 * 20 19 17 43 43 H 1.07997 * 120.09077 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.1088 -2.0270 1.0992 6 6 2.6684 -2.7343 2.1547 7 6 2.7690 -4.1113 2.0927 8 6 2.3239 -4.7902 0.9757 9 6 1.7611 -4.0878 -0.0878 10 6 1.2759 -4.8159 -1.2868 11 7 0.7306 -4.2843 -2.3499 12 8 0.4441 -5.1507 -3.1488 13 6 0.7856 -6.3496 -2.6661 14 6 0.5970 -7.6777 -3.3527 15 7 -0.7153 -8.2321 -2.9945 16 6 -0.9342 -9.5302 -3.6467 17 6 -2.2872 -10.0668 -3.2559 18 1 -2.9211 -9.5001 -2.5900 19 6 -2.7160 -11.2807 -3.7492 20 7 -1.9442 -11.9705 -4.5604 21 14 -4.3933 -11.9456 -3.2654 22 1 -5.4468 -10.9913 -3.6951 23 1 -4.6146 -13.2577 -3.9246 24 1 -4.4516 -12.1165 -1.7915 25 7 1.3208 -6.1524 -1.4870 26 6 1.6546 -2.7007 -0.0226 27 1 -0.3634 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.0220 -2.2074 3.0285 35 1 3.2009 -4.6575 2.9182 36 1 2.4081 -5.8658 0.9284 37 1 0.6505 -7.5394 -4.4326 38 1 1.3809 -8.3654 -3.0353 39 1 -1.4553 -7.5844 -3.2201 40 1 -0.8912 -9.4050 -4.7285 41 1 -0.1610 -10.2305 -3.3309 42 1 -2.2459 -12.8248 -4.9072 43 1 1.2191 -2.1519 -0.8445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211455122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:21 Heat of formation + Delta-G solvation = 31.963278 kcal Electronic energy + Delta-G solvation = -25003.901255 eV Core-core repulsion = 21244.827223 eV Total energy + Delta-G solvation = -3759.074032 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -46.69346 -41.39131 -38.97385 -37.66213 -36.77644 -34.94507 -34.26820 -33.60017 -31.80490 -30.86890 -29.65348 -28.22711 -26.82607 -26.00905 -24.69757 -23.69911 -23.45814 -22.29433 -21.65175 -19.64709 -19.26407 -18.73533 -18.11408 -17.28153 -17.08782 -16.87108 -16.49894 -16.42895 -16.08526 -15.45773 -15.22791 -15.13720 -14.67702 -14.47078 -14.37518 -13.98305 -13.94697 -13.48212 -13.35725 -13.31635 -13.13013 -13.09190 -12.81644 -12.71161 -12.63120 -12.60648 -12.38163 -12.16898 -12.07574 -11.87548 -11.72082 -11.43778 -11.27492 -10.64410 -9.95996 -9.31251 -9.28458 -8.21653 -6.31381 -0.49870 0.18060 0.30396 1.31104 1.44158 1.46378 1.54168 1.61816 2.10155 2.33077 2.42194 2.68884 2.80000 3.12851 3.52986 3.63461 3.72953 3.79904 3.90361 4.05671 4.07107 4.12366 4.24562 4.29551 4.36836 4.49033 4.54675 4.63321 4.68469 4.72393 4.82530 4.84682 4.88185 5.05105 5.08951 5.15652 5.24684 5.24978 5.30663 5.40066 5.58378 5.64054 5.97258 6.29135 6.32035 6.53196 6.84446 6.95418 7.38431 8.89111 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.002179 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.918964 B =12848.805134 C =13109.246031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.067 3.933 3 C -0.143 4.143 4 O -0.314 6.314 5 C 0.122 3.878 6 C -0.131 4.131 7 C -0.072 4.072 8 C -0.121 4.121 9 C -0.006 4.006 10 C 0.202 3.798 11 N -0.392 5.392 12 O 0.077 5.923 13 C 0.211 3.789 14 C 0.152 3.848 15 N -0.687 5.687 16 C 0.211 3.789 17 C -0.538 4.538 18 H 0.061 0.939 19 C 0.007 3.993 20 N -0.928 5.928 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.272 1.272 25 N -0.478 5.478 26 C -0.183 4.183 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.161 0.839 35 H 0.172 0.828 36 H 0.135 0.865 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.340 0.660 40 H -0.018 1.018 41 H 0.015 0.985 42 H 0.266 0.734 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.552 24.355 10.302 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.012 3.988 3 C -0.200 4.200 4 O -0.229 6.229 5 C 0.076 3.924 6 C -0.150 4.150 7 C -0.090 4.090 8 C -0.141 4.141 9 C -0.008 4.008 10 C -0.068 4.068 11 N -0.100 5.100 12 O 0.019 5.981 13 C -0.011 4.011 14 C 0.022 3.978 15 N -0.320 5.320 16 C 0.084 3.916 17 C -0.577 4.577 18 H 0.079 0.921 19 C -0.192 4.192 20 N -0.568 5.568 21 Si 0.793 3.207 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.197 1.197 25 N -0.211 5.211 26 C -0.204 4.204 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.178 0.822 35 H 0.189 0.811 36 H 0.153 0.847 37 H 0.105 0.895 38 H 0.138 0.862 39 H 0.158 0.842 40 H 0.000 1.000 41 H 0.033 0.967 42 H 0.075 0.925 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.892 24.783 11.173 29.286 hybrid contribution -1.217 -0.658 -1.444 2.000 sum 9.675 24.125 9.729 27.754 Atomic orbital electron populations 1.22378 0.94636 1.02355 1.04240 1.22692 0.94823 0.94774 0.86531 1.21863 1.02139 0.91788 1.04208 1.86125 1.81292 1.15508 1.39925 1.18960 0.95968 0.83308 0.94137 1.20983 1.01299 0.94059 0.98617 1.21290 0.96979 0.93124 0.97585 1.21314 0.98832 1.01057 0.92870 1.17286 1.01381 0.91900 0.90203 1.24328 0.99246 0.87384 0.95823 1.74802 1.18970 1.13731 1.02479 1.85253 1.60198 1.13800 1.38898 1.28977 0.91769 0.90928 0.89391 1.20516 0.95783 0.83969 0.97576 1.60556 1.01818 1.06200 1.63398 1.19272 0.96241 0.85050 0.91024 1.21445 1.02415 1.05039 1.28763 0.92080 1.25826 1.01555 0.96990 0.94864 1.70047 1.38771 1.14662 1.33274 0.85456 0.79297 0.77472 0.78500 1.19291 1.20765 1.19706 1.72022 1.21148 1.13531 1.14386 1.21240 1.05915 0.93290 0.99933 0.89323 0.93710 0.90855 0.91410 0.91539 0.88698 0.90996 0.82172 0.81053 0.84739 0.89462 0.86239 0.84227 0.99995 0.96690 0.92523 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 9.17 71.98 0.66 -2.04 16 2 C 0.07 1.06 2.85 30.59 0.09 1.15 16 3 C -0.14 -1.50 9.56 71.98 0.69 -0.81 16 4 O -0.31 -6.14 9.80 -92.50 -0.91 -7.04 16 5 C 0.12 2.58 6.59 22.48 0.15 2.73 16 6 C -0.13 -2.24 9.98 22.40 0.22 -2.02 16 7 C -0.07 -1.22 10.03 22.23 0.22 -1.00 16 8 C -0.12 -2.83 9.70 22.49 0.22 -2.61 16 9 C -0.01 -0.16 5.87 -20.05 -0.12 -0.28 16 10 C 0.20 6.54 7.80 137.30 1.07 7.61 16 11 N -0.39 -12.75 11.86 -59.14 -0.70 -13.45 16 12 O 0.08 2.44 11.29 74.59 0.84 3.29 16 13 C 0.21 6.77 8.01 88.35 0.71 7.48 16 14 C 0.15 4.84 6.31 85.56 0.54 5.38 16 15 N -0.69 -27.63 6.48 -522.00 -3.38 -31.01 16 16 C 0.21 10.42 5.44 85.56 0.47 10.89 16 17 C -0.54 -29.48 9.32 25.60 0.24 -29.24 16 18 H 0.06 3.30 7.81 -2.91 -0.02 3.27 16 19 C 0.01 0.37 5.46 84.65 0.46 0.83 16 20 N -0.93 -53.70 13.29 21.45 0.28 -53.42 16 21 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 N -0.48 -16.24 11.26 -302.50 -3.40 -19.65 16 26 C -0.18 -4.51 7.88 22.58 0.18 -4.33 16 27 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.04 0.85 6.90 -2.38 -0.02 0.84 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.14 6.31 -2.39 -0.02 1.13 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 34 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.13 3.24 7.87 -2.91 -0.02 3.22 16 37 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 39 H 0.34 13.14 8.72 -89.69 -0.78 12.36 16 40 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 41 H 0.01 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 43 H 0.13 3.27 5.23 -2.91 -0.02 3.25 16 Total: -1.00 -65.40 369.33 0.81 -64.59 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: 0.25 Total: 17.66 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 5.79 Total: -6.28 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -7.20 Total: -117.53 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.06 Total: -3.76 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -65.40 0.81 -64.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211455122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.552 kcal (2) G-P(sol) polarization free energy of solvation -65.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds