Wall clock time and date at job start Tue Mar 31 2020 12:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47273 * 2 1 4 4 O 1.42900 * 109.47271 * 180.02562 * 3 2 1 5 5 C 1.35630 * 117.00324 * 179.97438 * 4 3 2 6 6 N 1.30903 * 125.98558 * 359.96276 * 5 4 3 7 7 N 1.40114 * 107.93803 * 179.80264 * 6 5 4 8 8 C 1.30910 * 107.93917 * 0.38720 * 7 6 5 9 9 O 1.35631 * 125.98752 * 179.89136 * 8 7 6 10 10 C 1.42903 * 117.00172 * 359.67682 * 9 8 7 11 11 H 1.09005 * 109.46877 * 30.00977 * 10 9 8 12 12 C 1.50693 * 109.47459 * 270.00906 * 10 9 8 13 13 H 1.07996 * 120.00503 * 125.45621 * 12 10 9 14 14 C 1.37878 * 119.99977 * 305.45132 * 12 10 9 15 15 N 1.31518 * 119.99939 * 8.46255 * 14 12 10 16 16 Si 1.86803 * 120.00399 * 188.45904 * 14 12 10 17 17 H 1.48498 * 109.46697 * 59.99934 * 16 14 12 18 18 H 1.48497 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46912 * 300.00236 * 16 14 12 20 20 C 1.50701 * 109.46936 * 150.00536 * 10 9 8 21 21 C 1.38231 * 120.00059 * 29.28272 * 20 10 9 22 22 C 1.38234 * 120.00108 * 179.81021 * 21 20 10 23 23 C 1.38235 * 119.99756 * 0.40046 * 22 21 20 24 24 C 1.38234 * 120.00105 * 359.85486 * 23 22 21 25 25 C 1.38237 * 119.99596 * 209.56183 * 20 10 9 26 26 N 1.36367 * 108.02259 * 359.61872 * 8 7 6 27 27 C 1.46505 * 125.96445 * 180.24659 * 26 8 7 28 28 H 1.09000 * 109.47414 * 59.99392 * 1 2 3 29 29 H 1.08999 * 109.47561 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46216 * 299.99777 * 1 2 3 31 31 H 1.09003 * 109.46216 * 240.00223 * 2 1 3 32 32 H 1.09000 * 109.47414 * 120.00607 * 2 1 3 33 33 H 1.08999 * 109.47588 * 60.00481 * 3 2 1 34 34 H 1.09000 * 109.47397 * 300.00618 * 3 2 1 35 35 H 0.96997 * 119.99984 * 180.02562 * 15 14 12 36 36 H 1.08000 * 119.99991 * 0.02562 * 21 20 10 37 37 H 1.07997 * 120.00308 * 180.23556 * 22 21 20 38 38 H 1.07998 * 120.00152 * 179.83174 * 23 22 21 39 39 H 1.08000 * 120.00029 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00370 * 359.97438 * 25 20 10 41 41 H 1.08998 * 109.46804 * 89.99949 * 27 26 8 42 42 H 1.08997 * 109.46894 * 210.00249 * 27 26 8 43 43 H 1.09000 * 109.46781 * 329.99720 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0849 2.6508 -0.0012 6 7 3.4903 3.8171 -0.0020 7 7 4.4820 4.8070 0.0022 8 6 5.6472 4.2104 -0.0031 9 8 6.8568 4.8241 -0.0035 10 6 6.8593 6.2531 -0.0049 11 1 5.9699 6.6185 0.5087 12 6 6.8601 6.7541 -1.4261 13 1 6.0995 7.4467 -1.7550 14 6 7.8320 6.3285 -2.3065 15 7 8.6559 5.3635 -1.9603 16 14 7.9787 7.1222 -3.9912 17 1 8.2491 8.5737 -3.8325 18 1 9.0933 6.4894 -4.7411 19 1 6.7097 6.9339 -4.7392 20 6 8.0906 6.7539 0.7051 21 6 9.2478 5.9978 0.6986 22 6 10.3784 6.4590 1.3466 23 6 10.3493 7.6725 2.0080 24 6 9.1906 8.4262 2.0189 25 6 8.0610 7.9668 1.3677 26 7 5.4318 2.8638 -0.0019 27 6 6.4669 1.8270 -0.0013 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 9.3399 5.0643 -2.5796 36 1 9.2696 5.0484 0.1844 37 1 11.2836 5.8701 1.3383 38 1 11.2318 8.0317 2.5165 39 1 9.1678 9.3741 2.5360 40 1 7.1558 8.5556 1.3762 41 1 6.7238 1.5707 1.0265 42 1 6.0935 0.9407 -0.5143 43 1 7.3532 2.1982 -0.5158 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228453017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:42 Heat of formation + Delta-G solvation = 46.186502 kcal Electronic energy + Delta-G solvation = -26491.090600 eV Core-core repulsion = 22732.633334 eV Total energy + Delta-G solvation = -3758.457266 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.34359 -38.73058 -38.31241 -36.77007 -34.04762 -33.62833 -32.96583 -30.79336 -29.92976 -28.66877 -27.04152 -26.85370 -26.29114 -23.53117 -22.16826 -21.69344 -21.23392 -20.64860 -20.01183 -17.75411 -17.06407 -16.73154 -16.33289 -16.10255 -15.62612 -15.42811 -14.84963 -14.60721 -14.09110 -13.96541 -13.64839 -13.41143 -13.13543 -12.75844 -12.52112 -12.44826 -12.42350 -12.34747 -11.87899 -11.81415 -11.65945 -11.28335 -11.25529 -11.02176 -10.76481 -10.61996 -10.52645 -10.43745 -10.17970 -10.04589 -9.46792 -9.35171 -9.20255 -8.76556 -8.01500 -7.75404 -7.60187 -6.25190 -4.40807 1.95032 2.27471 2.37243 2.75200 3.22170 3.25386 3.30106 3.37723 3.53001 4.25061 4.40826 4.74342 4.74615 4.76725 4.97571 5.05561 5.08920 5.31066 5.32622 5.44140 5.53148 5.57667 5.66551 5.74393 5.76776 5.83874 5.87369 5.87757 5.96368 6.05641 6.17825 6.39647 6.51086 6.54095 6.73036 6.75992 6.88307 7.08145 7.31014 7.45110 7.59423 7.68418 7.77309 7.85582 7.98904 8.37604 8.72176 8.92433 9.30615 10.73094 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.003681 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.173224 B = 7603.800915 C = 8458.229411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.080 3.920 4 O -0.302 6.302 5 C 0.387 3.613 6 N -0.353 5.353 7 N -0.356 5.356 8 C 0.451 3.549 9 O -0.271 6.271 10 C 0.252 3.748 11 H 0.054 0.946 12 C -0.533 4.533 13 H 0.073 0.927 14 C 0.083 3.917 15 N -0.844 5.844 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.037 4.037 21 C -0.071 4.071 22 C -0.141 4.141 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.121 4.121 26 N -0.499 5.499 27 C 0.083 3.917 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.265 0.735 36 H 0.147 0.853 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.638 -8.949 5.250 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C 0.004 3.996 4 O -0.205 6.205 5 C 0.076 3.924 6 N -0.201 5.201 7 N -0.208 5.208 8 C 0.144 3.856 9 O -0.171 6.171 10 C 0.199 3.801 11 H 0.072 0.928 12 C -0.569 4.569 13 H 0.091 0.909 14 C -0.125 4.125 15 N -0.479 5.479 16 Si 0.722 3.278 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.037 4.037 21 C -0.089 4.089 22 C -0.159 4.159 23 C -0.164 4.164 24 C -0.155 4.155 25 C -0.139 4.139 26 N -0.215 5.215 27 C -0.060 4.060 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.164 0.836 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.197 -8.254 5.195 11.051 hybrid contribution 1.213 -0.416 -1.177 1.741 sum -3.983 -8.670 4.018 10.352 Atomic orbital electron populations 1.21669 0.93969 1.02338 1.02567 1.21516 0.96202 0.94759 1.03557 1.22807 0.75430 0.98199 1.03116 1.85795 1.23138 1.21194 1.90398 1.21031 0.81382 0.87860 1.02079 1.77973 1.21346 0.94284 1.26482 1.78284 0.94086 1.17212 1.31172 1.21827 0.89951 0.79552 0.94226 1.86344 1.17874 1.26620 1.86258 1.19063 0.92001 0.73162 0.95894 0.92800 1.21348 1.13041 1.28446 0.94064 0.90924 1.25040 0.94666 0.93907 0.98879 1.69940 1.17619 1.24478 1.35845 0.86595 0.77920 0.80041 0.83286 1.19714 1.21002 1.19908 1.19908 0.96438 0.94211 0.93180 1.21441 0.91150 1.01534 0.94783 1.21113 0.98440 0.96586 0.99749 1.20868 0.97514 0.96043 1.01975 1.20805 0.93598 0.99479 1.01626 1.20781 0.98289 0.96406 0.98467 1.44985 1.04868 1.06474 1.65141 1.21927 0.91117 0.89911 1.03072 0.92149 0.91804 0.92184 0.90877 0.90899 0.91262 0.91229 0.92494 0.83575 0.87592 0.87758 0.87377 0.86932 0.91324 0.90168 0.88415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -1.10 6.30 -26.73 -0.17 -1.27 16 3 C 0.08 1.00 5.62 37.15 0.21 1.20 16 4 O -0.30 -4.75 10.13 -18.59 -0.19 -4.94 16 5 C 0.39 7.52 8.58 -88.81 -0.76 6.76 16 6 N -0.35 -7.76 12.10 29.65 0.36 -7.40 16 7 N -0.36 -8.70 11.62 29.65 0.34 -8.36 16 8 C 0.45 10.56 8.53 -88.81 -0.76 9.80 16 9 O -0.27 -6.60 7.61 -18.59 -0.14 -6.75 16 10 C 0.25 6.23 2.45 -29.04 -0.07 6.16 16 11 H 0.05 1.34 7.23 -51.93 -0.38 0.97 16 12 C -0.53 -14.15 8.86 -34.44 -0.31 -14.45 16 13 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 14 C 0.08 2.16 5.22 -17.82 -0.09 2.07 16 15 N -0.84 -21.68 9.55 55.43 0.53 -21.15 16 16 Si 0.89 20.62 29.55 -169.99 -5.02 15.60 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 C -0.04 -0.84 4.82 -104.62 -0.50 -1.35 16 21 C -0.07 -1.56 8.08 -39.59 -0.32 -1.88 16 22 C -0.14 -2.71 10.05 -39.58 -0.40 -3.10 16 23 C -0.15 -2.59 10.05 -39.58 -0.40 -2.99 16 24 C -0.14 -2.48 10.05 -39.58 -0.40 -2.88 16 25 C -0.12 -2.48 9.70 -39.58 -0.38 -2.87 16 26 N -0.50 -9.93 3.16 -127.49 -0.40 -10.33 16 27 C 0.08 1.27 11.04 59.85 0.66 1.93 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 36 H 0.15 3.45 5.99 -52.49 -0.31 3.13 16 37 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 39 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 367.31 15.07 5.54 5.54 Total: -1.00 -30.02 367.31 -8.46 -38.48 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.15 Total: 2.87 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.32 Total: -3.56 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.83 Total: -47.24 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.33 Total: -11.69 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.02 -8.46 -38.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228453017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.671 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds