Wall clock time and date at job start Tue Mar 31 2020 12:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47273 * 2 1 4 4 O 1.42900 * 109.47271 * 180.02562 * 3 2 1 5 5 C 1.35630 * 117.00324 * 179.97438 * 4 3 2 6 6 N 1.30903 * 125.98558 * 359.96276 * 5 4 3 7 7 N 1.40114 * 107.93803 * 179.80264 * 6 5 4 8 8 C 1.30910 * 107.93917 * 0.38720 * 7 6 5 9 9 O 1.35631 * 125.98752 * 179.89136 * 8 7 6 10 10 C 1.42903 * 117.00172 * 359.67682 * 9 8 7 11 11 H 1.09005 * 109.46877 * 30.00977 * 10 9 8 12 12 C 1.50693 * 109.47459 * 270.00906 * 10 9 8 13 13 H 1.07996 * 120.00503 * 125.45621 * 12 10 9 14 14 C 1.37878 * 119.99977 * 305.45132 * 12 10 9 15 15 N 1.31518 * 119.99939 * 8.46255 * 14 12 10 16 16 Si 1.86803 * 120.00399 * 188.45904 * 14 12 10 17 17 H 1.48498 * 109.46697 * 59.99934 * 16 14 12 18 18 H 1.48497 * 109.47157 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46912 * 300.00236 * 16 14 12 20 20 C 1.50701 * 109.46936 * 150.00536 * 10 9 8 21 21 C 1.38231 * 120.00059 * 29.28272 * 20 10 9 22 22 C 1.38234 * 120.00108 * 179.81021 * 21 20 10 23 23 C 1.38235 * 119.99756 * 0.40046 * 22 21 20 24 24 C 1.38234 * 120.00105 * 359.85486 * 23 22 21 25 25 C 1.38237 * 119.99596 * 209.56183 * 20 10 9 26 26 N 1.36367 * 108.02259 * 359.61872 * 8 7 6 27 27 C 1.46505 * 125.96445 * 180.24659 * 26 8 7 28 28 H 1.09000 * 109.47414 * 59.99392 * 1 2 3 29 29 H 1.08999 * 109.47561 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46216 * 299.99777 * 1 2 3 31 31 H 1.09003 * 109.46216 * 240.00223 * 2 1 3 32 32 H 1.09000 * 109.47414 * 120.00607 * 2 1 3 33 33 H 1.08999 * 109.47588 * 60.00481 * 3 2 1 34 34 H 1.09000 * 109.47397 * 300.00618 * 3 2 1 35 35 H 0.96997 * 119.99984 * 180.02562 * 15 14 12 36 36 H 1.08000 * 119.99991 * 0.02562 * 21 20 10 37 37 H 1.07997 * 120.00308 * 180.23556 * 22 21 20 38 38 H 1.07998 * 120.00152 * 179.83174 * 23 22 21 39 39 H 1.08000 * 120.00029 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00370 * 359.97438 * 25 20 10 41 41 H 1.08998 * 109.46804 * 89.99949 * 27 26 8 42 42 H 1.08997 * 109.46894 * 210.00249 * 27 26 8 43 43 H 1.09000 * 109.46781 * 329.99720 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0849 2.6508 -0.0012 6 7 3.4903 3.8171 -0.0020 7 7 4.4820 4.8070 0.0022 8 6 5.6472 4.2104 -0.0031 9 8 6.8568 4.8241 -0.0035 10 6 6.8593 6.2531 -0.0049 11 1 5.9699 6.6185 0.5087 12 6 6.8601 6.7541 -1.4261 13 1 6.0995 7.4467 -1.7550 14 6 7.8320 6.3285 -2.3065 15 7 8.6559 5.3635 -1.9603 16 14 7.9787 7.1222 -3.9912 17 1 8.2491 8.5737 -3.8325 18 1 9.0933 6.4894 -4.7411 19 1 6.7097 6.9339 -4.7392 20 6 8.0906 6.7539 0.7051 21 6 9.2478 5.9978 0.6986 22 6 10.3784 6.4590 1.3466 23 6 10.3493 7.6725 2.0080 24 6 9.1906 8.4262 2.0189 25 6 8.0610 7.9668 1.3677 26 7 5.4318 2.8638 -0.0019 27 6 6.4669 1.8270 -0.0013 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 9.3399 5.0643 -2.5796 36 1 9.2696 5.0484 0.1844 37 1 11.2836 5.8701 1.3383 38 1 11.2318 8.0317 2.5165 39 1 9.1678 9.3741 2.5360 40 1 7.1558 8.5556 1.3762 41 1 6.7238 1.5707 1.0265 42 1 6.0935 0.9407 -0.5143 43 1 7.3532 2.1982 -0.5158 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228453017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:41 Heat of formation + Delta-G solvation = 27.569400 kcal Electronic energy + Delta-G solvation = -26491.897899 eV Core-core repulsion = 22732.633334 eV Total energy + Delta-G solvation = -3759.264565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.98493 -40.30927 -39.69775 -38.45525 -35.29997 -34.99337 -34.64808 -32.47948 -31.46732 -30.30827 -28.84131 -28.08934 -27.45397 -25.35574 -23.50954 -23.15346 -22.43129 -22.18065 -21.64940 -19.35136 -18.72927 -18.20966 -17.95414 -17.64249 -17.06654 -16.88669 -16.56904 -16.02617 -15.59067 -15.35526 -15.11969 -14.77727 -14.61042 -14.08011 -13.92343 -13.91055 -13.52578 -13.51171 -13.40095 -13.26191 -13.05493 -12.86116 -12.58476 -12.35815 -12.26302 -12.20418 -12.05525 -11.81777 -11.67777 -11.58083 -11.22836 -11.12412 -10.81163 -10.68388 -9.55858 -9.41793 -9.29292 -8.18606 -6.42245 0.43012 0.73055 0.83884 1.14831 1.37431 1.37645 1.44808 1.60340 2.05213 2.34599 2.84616 3.11673 3.21217 3.48750 3.88273 3.93011 4.03134 4.23747 4.27942 4.30917 4.33890 4.35766 4.43217 4.54064 4.54307 4.58228 4.64301 4.78997 4.83864 4.90552 5.00989 5.05970 5.10741 5.18018 5.19662 5.33240 5.39931 5.51599 5.60837 5.79047 5.89714 5.92995 6.09786 6.21241 6.40245 6.49039 6.83396 7.18159 7.31994 8.77135 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.015138 B = 0.003681 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.173224 B = 7603.800915 C = 8458.229411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C 0.070 3.930 4 O -0.292 6.292 5 C 0.403 3.597 6 N -0.378 5.378 7 N -0.391 5.391 8 C 0.433 3.567 9 O -0.276 6.276 10 C 0.258 3.742 11 H 0.034 0.966 12 C -0.561 4.561 13 H 0.053 0.947 14 C 0.051 3.949 15 N -0.851 5.851 16 Si 0.945 3.055 17 H -0.270 1.270 18 H -0.273 1.273 19 H -0.281 1.281 20 C -0.065 4.065 21 C -0.089 4.089 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.131 4.131 25 C -0.137 4.137 26 N -0.499 5.499 27 C 0.080 3.920 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.267 0.733 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.116 0.884 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 -9.780 6.010 12.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.004 4.004 4 O -0.195 6.195 5 C 0.092 3.908 6 N -0.227 5.227 7 N -0.242 5.242 8 C 0.125 3.875 9 O -0.176 6.176 10 C 0.204 3.796 11 H 0.052 0.948 12 C -0.598 4.598 13 H 0.071 0.929 14 C -0.156 4.156 15 N -0.485 5.485 16 Si 0.770 3.230 17 H -0.195 1.195 18 H -0.198 1.198 19 H -0.207 1.207 20 C -0.066 4.066 21 C -0.107 4.107 22 C -0.161 4.161 23 C -0.154 4.154 24 C -0.148 4.148 25 C -0.155 4.155 26 N -0.214 5.214 27 C -0.062 4.062 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.134 0.866 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.084 -9.126 5.963 11.642 hybrid contribution 0.798 -0.249 -1.325 1.567 sum -3.285 -9.376 4.638 10.964 Atomic orbital electron populations 1.21687 0.92391 1.03575 1.02664 1.21541 0.97284 0.91994 1.04256 1.23208 0.73520 1.00900 1.02821 1.85898 1.24928 1.18837 1.89815 1.21217 0.81313 0.88549 0.99672 1.77874 1.21149 0.94925 1.28725 1.78166 0.95093 1.19132 1.31842 1.21902 0.89524 0.81029 0.95048 1.86287 1.18279 1.26424 1.86586 1.18921 0.92416 0.73118 0.95124 0.94778 1.21409 1.13417 1.29189 0.95752 0.92882 1.25545 0.94442 0.94340 1.01275 1.70033 1.17534 1.24549 1.36414 0.85836 0.77653 0.79414 0.80114 1.19508 1.19810 1.20694 1.19919 0.95992 0.95649 0.95035 1.21295 0.92224 1.01025 0.96201 1.21402 0.98179 0.97564 0.98968 1.21338 0.98676 0.94845 1.00524 1.21231 0.92580 1.00686 1.00332 1.20995 0.99778 0.95801 0.98929 1.45133 1.05915 1.06026 1.64375 1.22214 0.89690 0.89383 1.04916 0.92237 0.89957 0.92000 0.90340 0.90023 0.91364 0.91842 0.92378 0.85811 0.85132 0.83620 0.83694 0.86623 0.88975 0.87316 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.11 -1.80 6.30 30.59 0.19 -1.61 16 3 C 0.07 1.69 5.62 71.98 0.40 2.10 16 4 O -0.29 -8.90 10.13 -89.43 -0.91 -9.81 16 5 C 0.40 15.75 8.58 179.72 1.54 17.30 16 6 N -0.38 -17.14 12.10 -173.66 -2.10 -19.24 16 7 N -0.39 -20.06 11.62 -173.65 -2.02 -22.08 16 8 C 0.43 21.14 8.53 179.72 1.53 22.67 16 9 O -0.28 -14.09 7.61 -89.44 -0.68 -14.77 16 10 C 0.26 13.43 2.45 29.10 0.07 13.50 16 11 H 0.03 1.84 7.23 -2.38 -0.02 1.82 16 12 C -0.56 -31.27 8.86 25.60 0.23 -31.04 16 13 H 0.05 3.05 7.83 -2.91 -0.02 3.03 16 14 C 0.05 2.72 5.22 84.65 0.44 3.16 16 15 N -0.85 -44.65 9.55 21.45 0.20 -44.44 16 16 Si 0.94 42.99 29.55 68.60 2.03 45.02 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 20 C -0.07 -3.08 4.82 -19.87 -0.10 -3.17 16 21 C -0.09 -3.97 8.08 22.27 0.18 -3.79 16 22 C -0.14 -5.23 10.05 22.27 0.22 -5.01 16 23 C -0.14 -4.35 10.05 22.27 0.22 -4.13 16 24 C -0.13 -4.38 10.05 22.27 0.22 -4.15 16 25 C -0.14 -5.61 9.70 22.27 0.22 -5.39 16 26 N -0.50 -20.09 3.16 -778.69 -2.46 -22.55 16 27 C 0.08 2.36 11.04 127.77 1.41 3.77 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 35 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 36 H 0.12 6.03 5.99 -2.91 -0.02 6.01 16 37 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 39 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 40 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 41 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 43 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -67.72 367.31 2.58 -65.14 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 1.00 Total: 19.58 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 7.51 Total: 3.15 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -6.38 Total: -108.31 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -1.59 Total: -24.58 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -67.72 2.58 -65.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228453017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.709 kcal (2) G-P(sol) polarization free energy of solvation -67.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds